Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0002352

Physical Location & Seq

Genomic Coordinates Forward (+)

17919699 .. 17922377

Gene Structure 2679 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000032696

Sequence Viewer

CDS Protein Promoter (2k)

Length: 693 bp

ATGAGCCGTCTGCCTCCCCGATTCGAGCCCACTGAGGTCATCCGCCTCCTCCCGAAATACAAGCACGCCTTCCACGTGGAGTGCGTCGATAGGTGGCTCAACGCCCACTCCACCTCCCTGCTCTGCCGCTACCGGGTCGACCGGGAAGACATCCTCCTAATCGAATACGCCAGAATCCTGCACCACCAGAACAGCCAGCCCCAGACTCCCCACCAAAACGATGTTGTCATCAACATCGAAACCAACCAGGGAATCTGCCGCGTCGCAGAGCGCCGCTCCTCCGCCTTGGAGCAGCAACCCGGCTCCTCCTCTCACAACAATATGTCATCGTTCCGGAGGTCCCTCGACAGCTGGACCTGGTTCCGGAAAAAAACCGAACCCGCGGACGTTGCTGGAAGCCAAGAACGTCCGAGAAAAGACGACCTCCTTTTAAGCCACGACAAAACGAGGCTAGAGCACAAAATCATTCCAGCTTCCCGCCTTAAAATTTTCGCTTGTTTGACAATGGGCGGCATCAACGCTATTCTTGGTCAGGATTTTGTTGTTGTTGCTGCCGGATGGGTGGTTTCTATGGTATGGTCCTCGGGTTGGTTTAATTTGAAGGAACATGGTGGTGCTTGGGTTGTTCTGGTCAATGCATTACTATTGTGGGGTGTTTGTGAACTTAGACATCGAGACGGCGCAAGGCTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

231

Amino Acids

26.4

Weight (kDa)

9.24

Isoelectric Point (pI)

56.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002352)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G05810
fragaria_vesca	FvH4_4g06660
malus_domestica	MD13G1236900.v1.1 MD16G1242200.v1.1
prunus_persica	Prupe.1G069300_v2.0.a1
pyrus_communis	pycom13g20980 pycom16g20300
rosa_chinensis	RchiOBHm_Chr3g0495141 RchiOBHm_Chr4g0398561
rosa_laevigata	RLG00000009344 RLG00000026064 RLG00000029692 RLG00000030599 RLG00000032695 RLG00000032696
rosa_multiflora	Rmu_co8139468.1_g000001 Rmu_co8270033.1_g000001 Rmu_co8275827.1_g000001 Rmu_sc0000185.1_g000029 Rmu_sc0000990.1_g000016 Rmu_sc0005217.1_g000007 Rmu_sc0005996.1_g000027 Rmu_sc0009001.1_g000015 Rmu_sc0013727.1_g000001 Rmu_sc0016350.1_g000001
rosa_roxburghii	Rroxscaffold_5G00343530
rosa_rugosa	Rorug04G0009400
rosa_samantha	Rh1AG207300 Rh2AG231000 Rh2AG449700 Rh2CG436600 Rh2DG238800 Rh3DG271300 Rh4AG087300 Rh4BG083900 Rh4CG095500 Rh4DG078800 Rh4DG124400 Rh5DG085200 Rh6BG230400
rosa_wichuraiana	Rw1G018260 Rw1G018370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	276
AccI	GTMKAC	1 cut(s)	138
AccII	CGCG	2 cut(s)	261, 383
AccIII	TCCGGA	2 cut(s)	333, 363
AciI	CCGC	9 cut(s)	43, 127, 259, 274, 282, 381, 383, 478, 510
AcsI	RAATTY	1 cut(s)	486
AcvI	CACGTG	1 cut(s)	76
AfiI	CCNNNNNNNGG	3 cut(s)	133, 363, 588
AgsI	TTSAA	1 cut(s)	601
AjnI	CCWGG	2 cut(s)	246, 356
AluBI	AGCT	2 cut(s)	351, 473
AluI	AGCT	2 cut(s)	351, 473
Alw21I	GWGCWC	1 cut(s)	459
Alw26I	GTCTC	1 cut(s)	669
Ama87I	CYCGRG	1 cut(s)	583
Aor13HI	TCCGGA	2 cut(s)	333, 363
ApeKI	GCWGC	2 cut(s)	292, 551
ApoI	RAATTY	1 cut(s)	486
AspLEI	GCGC	2 cut(s)	273, 683
AspS9I	GGNCC	3 cut(s)	339, 354, 579
AsuC2I	CCSGG	3 cut(s)	134, 143, 300
AvaI	CYCGRG	1 cut(s)	583
AvaII	GGWCC	3 cut(s)	339, 354, 579
BanII	GRGCYC	1 cut(s)	30
BbrPI	CACGTG	1 cut(s)	76
BbsI	GAAGAC	1 cut(s)	153
Bbv12I	GWGCWC	1 cut(s)	459
BbvI	GCAGC	2 cut(s)	304, 538
BccI	CCATC	1 cut(s)	552
BciT130I	CCWGG	2 cut(s)	248, 358
BcnI	CCSGG	3 cut(s)	134, 143, 300
BcoDI	GTCTC	1 cut(s)	669
BfaI	CTAG	1 cut(s)	452
BfmI	CTRYAG	1 cut(s)	689
BfoI	RGCGCY	1 cut(s)	274
BisI	GCNGC	6 cut(s)	127, 259, 274, 293, 511, 552
BlsI	GCNGC	6 cut(s)	128, 260, 275, 294, 512, 553
Bme1390I	CCNGG	5 cut(s)	134, 143, 248, 300, 358
Bme18I	GGWCC	3 cut(s)	339, 354, 579
BmeT110I	CYCGRG	1 cut(s)	583
BmgT120I	GGNCC	3 cut(s)	339, 354, 579
BmiI	GGNNCC	3 cut(s)	304, 341, 362
BmrFI	CCNGG	5 cut(s)	134, 143, 248, 300, 358
BmsI	GCATC	1 cut(s)	522
BpiI	GAAGAC	1 cut(s)	153
BplI	GAGNNNNNCTC	2 cut(s)	260, 292
BpuMI	CCSGG	3 cut(s)	134, 143, 300
BsaAI	YACGTR	1 cut(s)	76
BsaJI	CCNNGG	4 cut(s)	247, 285, 381, 582
BsaWI	WCCGGW	2 cut(s)	333, 363
BsaXI	ACNNNNNCTCC	4 cut(s)	92, 98, 122, 128
Bsc4I	CCNNNNNNNGG	3 cut(s)	133, 363, 588
BseAI	TCCGGA	2 cut(s)	333, 363
BseBI	CCWGG	2 cut(s)	248, 358
BseDI	CCNNGG	4 cut(s)	247, 285, 381, 582
BseGI	GGATG	3 cut(s)	39, 150, 563
BseLI	CCNNNNNNNGG	3 cut(s)	133, 363, 588
BseMII	CTCAG	1 cut(s)	24
BseRI	GAGGAG	4 cut(s)	38, 268, 295, 298
BseXI	GCAGC	2 cut(s)	304, 538
BsgI	GTGCAG	1 cut(s)	164
Bsh1236I	CGCG	2 cut(s)	261, 383
Bsh1285I	CGRYCG	1 cut(s)	142
BsiEI	CGRYCG	1 cut(s)	142
BsiHKAI	GWGCWC	1 cut(s)	459
BsiHKCI	CYCGRG	1 cut(s)	583
BsiSI	CCGG	6 cut(s)	133, 142, 300, 334, 364, 555
BslFI	GGGAC	1 cut(s)	325
BslI	CCNNNNNNNGG	3 cut(s)	133, 363, 588
BsmAI	GTCTC	1 cut(s)	669
BsmBI	CGTCTC	1 cut(s)	669
BsmFI	GGGAC	1 cut(s)	325
BsoBI	CYCGRG	1 cut(s)	583
Bsp1286I	GDGCHC	2 cut(s)	30, 459
Bsp13I	TCCGGA	2 cut(s)	333, 363
BspACI	CCGC	9 cut(s)	43, 127, 259, 274, 282, 381, 383, 478, 510
BspCNI	CTCAG	1 cut(s)	25
BspEI	TCCGGA	2 cut(s)	333, 363
BspFNI	CGCG	2 cut(s)	261, 383
BspLI	GGNNCC	3 cut(s)	304, 341, 362
BsrBI	CCGCTC	1 cut(s)	276
BssECI	CCNNGG	4 cut(s)	247, 285, 381, 582
BssT1I	CCWWGG	1 cut(s)	285
Bst2UI	CCWGG	2 cut(s)	248, 358
BstBAI	YACGTR	1 cut(s)	76
BstC8I	GCNNGC	2 cut(s)	66, 197
BstDEI	CTNAG	2 cut(s)	33, 665
BstDSI	CCRYGG	1 cut(s)	381
BstF5I	GGATG	3 cut(s)	39, 150, 563
BstFNI	CGCG	2 cut(s)	261, 383
BstH2I	RGCGCY	1 cut(s)	274
BstHHI	GCGC	2 cut(s)	273, 683
BstMAI	GTCTC	1 cut(s)	669
BstMCI	CGRYCG	1 cut(s)	142
BstMWI	GCNNNNNNNGC	1 cut(s)	389
BstNI	CCWGG	2 cut(s)	248, 358
BstSCI	CCNGG	5 cut(s)	132, 141, 246, 298, 356
BstSFI	CTRYAG	1 cut(s)	689
BstUI	CGCG	2 cut(s)	261, 383
BstV1I	GCAGC	2 cut(s)	304, 538
BstV2I	GAAGAC	1 cut(s)	153
BtgI	CCRYGG	1 cut(s)	381
BtsCI	GGATG	3 cut(s)	39, 150, 563
BtsIMutI	CAGTG	1 cut(s)	30
Cac8I	GCNNGC	2 cut(s)	66, 197
CfoI	GCGC	2 cut(s)	273, 683
Cfr13I	GGNCC	3 cut(s)	339, 354, 579
Cfr42I	CCGCGG	1 cut(s)	384
CseI	GACGC	2 cut(s)	73, 250
CsiI	ACCWGGT	1 cut(s)	356
CviAII	CATG	1 cut(s)	608
DdeI	CTNAG	2 cut(s)	33, 665
EciI	GGCGGA	2 cut(s)	32, 271
Eco130I	CCWWGG	1 cut(s)	285
Eco24I	GRGCYC	1 cut(s)	30
Eco47I	GGWCC	3 cut(s)	339, 354, 579
Eco72I	CACGTG	1 cut(s)	76
Eco88I	CYCGRG	1 cut(s)	583
EcoO109I	RGGNCCY	1 cut(s)	339
EcoRII	CCWGG	2 cut(s)	246, 356
EcoT14I	CCWWGG	1 cut(s)	285
EcoT22I	ATGCAT	1 cut(s)	640
EcoT38I	GRGCYC	1 cut(s)	30
ErhI	CCWWGG	1 cut(s)	285
Esp3I	CGTCTC	1 cut(s)	669
FaeI	CATG	1 cut(s)	611
FaiI	YATR	4 cut(s)	323, 572, 577, 609
FalI	AAGNNNNNCTT	2 cut(s)	53, 85
FaqI	GGGAC	1 cut(s)	325
FatI	CATG	1 cut(s)	607
FauI	CCCGC	2 cut(s)	388, 485
FblI	GTMKAC	1 cut(s)	138
Fnu4HI	GCNGC	6 cut(s)	127, 259, 274, 293, 511, 552
FokI	GGATG	3 cut(s)	26, 137, 570
FriOI	GRGCYC	1 cut(s)	30
Fsp4HI	GCNGC	6 cut(s)	127, 259, 274, 293, 511, 552
FspBI	CTAG	1 cut(s)	452
GlaI	GCGC	2 cut(s)	272, 682
GluI	GCNGC	6 cut(s)	127, 259, 274, 293, 511, 552
HaeII	RGCGCY	1 cut(s)	274
HapII	CCGG	6 cut(s)	133, 142, 300, 334, 364, 555
HgaI	GACGC	2 cut(s)	73, 250
HhaI	GCGC	2 cut(s)	273, 683
Hin1II	CATG	1 cut(s)	611
Hin6I	GCGC	2 cut(s)	271, 681
HinP1I	GCGC	2 cut(s)	271, 681
HincII	GTYRAC	1 cut(s)	139
HindII	GTYRAC	1 cut(s)	139
HinfI	GANTC	4 cut(s)	21, 174, 205, 252
HpaII	CCGG	6 cut(s)	133, 142, 300, 334, 364, 555
Hpy166II	GTNNAC	2 cut(s)	139, 662
Hpy188I	TCNGA	1 cut(s)	411
Hpy188III	TCNNGA	5 cut(s)	52, 334, 364, 533, 674
Hpy8I	GTNNAC	2 cut(s)	139, 662
Hpy99I	CGWCG	2 cut(s)	89, 266
HpyAV	CCTTC	2 cut(s)	79, 595
HpyCH4IV	ACGT	3 cut(s)	75, 387, 406
HpyCH4V	TGCA	2 cut(s)	181, 638
HpyF10VI	GCNNNNNNNGC	1 cut(s)	389
HpyF3I	CTNAG	2 cut(s)	33, 665
HpySE526I	ACGT	3 cut(s)	75, 387, 406
Hsp92II	CATG	1 cut(s)	611
HspAI	GCGC	2 cut(s)	271, 681
Kpn2I	TCCGGA	2 cut(s)	333, 363
KspI	CCGCGG	1 cut(s)	384
LmnI	GCTCC	3 cut(s)	281, 289, 308
Lsp1109I	GCAGC	2 cut(s)	304, 538
LweI	GCATC	1 cut(s)	522
MabI	ACCWGGT	1 cut(s)	356
MaeI	CTAG	1 cut(s)	452
MaeII	ACGT	3 cut(s)	75, 387, 406
MbiI	CCGCTC	1 cut(s)	276
MboII	GAAGA	1 cut(s)	158
MhlI	GDGCHC	2 cut(s)	30, 459
MluCI	AATT	2 cut(s)	486, 595
MlyI	GAGTC	1 cut(s)	199
Mph1103I	ATGCAT	1 cut(s)	640
MroI	TCCGGA	2 cut(s)	333, 363
MseI	TTAA	3 cut(s)	431, 483, 594
MslI	CAYNNNNRTG	1 cut(s)	612
MspA1I	CMGCKG	2 cut(s)	351, 383
MspI	CCGG	6 cut(s)	133, 142, 300, 334, 364, 555
MspR9I	CCNGG	5 cut(s)	134, 143, 248, 300, 358
MvaI	CCWGG	2 cut(s)	248, 358
MvnI	CGCG	2 cut(s)	261, 383
MwoI	GCNNNNNNNGC	1 cut(s)	389
NciI	CCSGG	3 cut(s)	134, 143, 300
NlaIII	CATG	1 cut(s)	611
NlaIV	GGNNCC	3 cut(s)	304, 341, 362
NsiI	ATGCAT	1 cut(s)	640
PcsI	WCGNNNNNNNCGW	2 cut(s)	72, 81
PfeI	GAWTC	3 cut(s)	21, 174, 252
PkrI	GCNGC	6 cut(s)	128, 260, 275, 294, 512, 553
PleI	GAGTC	1 cut(s)	199
PmaCI	CACGTG	1 cut(s)	76
PmlI	CACGTG	1 cut(s)	76
PpsI	GAGTC	1 cut(s)	199
Ppu21I	YACGTR	1 cut(s)	76
PpuMI	RGGWCCY	1 cut(s)	339
Psp5II	RGGWCCY	1 cut(s)	339
Psp6I	CCWGG	2 cut(s)	246, 356
PspCI	CACGTG	1 cut(s)	76
PspGI	CCWGG	2 cut(s)	246, 356
PspN4I	GGNNCC	3 cut(s)	304, 341, 362
PspPI	GGNCC	3 cut(s)	339, 354, 579
PspPPI	RGGWCCY	1 cut(s)	339
PvuII	CAGCTG	1 cut(s)	351
RseI	CAYNNNNRTG	1 cut(s)	612
SacII	CCGCGG	1 cut(s)	384
SalI	GTCGAC	1 cut(s)	137
SaqAI	TTAA	3 cut(s)	431, 483, 594
SatI	GCNGC	6 cut(s)	127, 259, 274, 293, 511, 552
Sau96I	GGNCC	3 cut(s)	339, 354, 579
SchI	GAGTC	1 cut(s)	199
ScrFI	CCNGG	5 cut(s)	134, 143, 248, 300, 358
SduI	GDGCHC	2 cut(s)	30, 459
SexAI	ACCWGGT	1 cut(s)	356
SfaNI	GCATC	1 cut(s)	522
SfcI	CTRYAG	1 cut(s)	689
Sfr303I	CCGCGG	1 cut(s)	384
SgrBI	CCGCGG	1 cut(s)	384
SinI	GGWCC	3 cut(s)	339, 354, 579
SmiMI	CAYNNNNRTG	1 cut(s)	612
Sse9I	AATT	2 cut(s)	486, 595
SsiI	CCGC	9 cut(s)	43, 127, 259, 274, 282, 381, 383, 478, 510
SspMI	CTAG	1 cut(s)	452
StyD4I	CCNGG	5 cut(s)	132, 141, 246, 298, 356
StyI	CCWWGG	1 cut(s)	285
TaiI	ACGT	3 cut(s)	78, 390, 409
TaqI	TCGA	7 cut(s)	24, 87, 138, 162, 237, 345, 673
TasI	AATT	2 cut(s)	486, 595
TauI	GCSGC	4 cut(s)	129, 261, 276, 513
TfiI	GAWTC	3 cut(s)	21, 174, 252
Tru1I	TTAA	3 cut(s)	431, 483, 594
Tru9I	TTAA	3 cut(s)	431, 483, 594
TscAI	CASTG	1 cut(s)	37
TseI	GCWGC	2 cut(s)	292, 551
TspRI	CASTG	1 cut(s)	37
VpaK11BI	GGWCC	3 cut(s)	339, 354, 579
XapI	RAATTY	1 cut(s)	486
XmiI	GTMKAC	1 cut(s)	138
XspI	CTAG	1 cut(s)	452
Zsp2I	ATGCAT	1 cut(s)	640

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.