Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0002352

Physical Location & Seq

Genomic Coordinates Reverse (-)

43489544 .. 43489954

Gene Structure 411 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG230400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

ATGTTTCTTCTCCTCCTCTACGCTAAGCACTGCAAGGGCGGTAGCTTCGTCGTCATCGGAGGAACCACCGACACCGGACCTCCCAGCGGGGCGGGTCTCCGTAAAAACAACGAAATCGACCGGGCCGTCGTCGAGGAGTGCGTCCACACGTGGCTCGACGCCCACTTCACCTGCCCGCTCTGCCGCTACCGGGTCGACCCGGAAGACATCCTCCTAATCGAAGACGCCAGAATCCCGCACTACCAGAACAGCCAGCCCCAGACTCCCCACCAAAACGACGTCGTCATAAACATCGAAACCGACCTGGGAATCGGCCGCGTCTCGGGGCGCCACTCCTCCGCCTTGGAGCAGCGACCCGGCTCCTCCTCTCACGACAATACATCGTCATTCCGGAGGTCCCTCGACAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

136

Amino Acids

15.04

Weight (kDa)

5.93

Isoelectric Point (pI)

56.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002352)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G05810
fragaria_vesca	FvH4_4g06660
malus_domestica	MD13G1236900.v1.1 MD16G1242200.v1.1
prunus_persica	Prupe.1G069300_v2.0.a1
pyrus_communis	pycom13g20980 pycom16g20300
rosa_chinensis	RchiOBHm_Chr3g0495141 RchiOBHm_Chr4g0398561
rosa_laevigata	RLG00000009344 RLG00000026064 RLG00000029692 RLG00000030599 RLG00000032695 RLG00000032696
rosa_multiflora	Rmu_co8139468.1_g000001 Rmu_co8270033.1_g000001 Rmu_co8275827.1_g000001 Rmu_sc0000185.1_g000029 Rmu_sc0000990.1_g000016 Rmu_sc0005217.1_g000007 Rmu_sc0005996.1_g000027 Rmu_sc0009001.1_g000015 Rmu_sc0013727.1_g000001 Rmu_sc0016350.1_g000001
rosa_roxburghii	Rroxscaffold_5G00343530
rosa_rugosa	Rorug04G0009400
rosa_samantha	Rh1AG207300 Rh2AG231000 Rh2AG449700 Rh2CG436600 Rh2DG238800 Rh3DG271300 Rh4AG087300 Rh4BG083900 Rh4CG095500 Rh4DG078800 Rh4DG124400 Rh5DG085200 Rh6BG230400
rosa_wichuraiana	Rw1G018260 Rw1G018370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	179
AasI	GACNNNNNNGTC	1 cut(s)	125
AatII	GACGTC	1 cut(s)	282
Acc36I	ACCTGC	1 cut(s)	179
AccB1I	GGYRCC	1 cut(s)	327
AccBSI	CCGCTC	1 cut(s)	178
AccI	GTMKAC	1 cut(s)	195
AccII	CGCG	1 cut(s)	318
AccIII	TCCGGA	1 cut(s)	390
AciI	CCGC	8 cut(s)	39, 87, 92, 176, 184, 236, 316, 339
AcoI	YGGCCR	1 cut(s)	313
AcvI	CACGTG	1 cut(s)	150
AcyI	GRCGYC	4 cut(s)	159, 225, 279, 328
AfiI	CCNNNNNNNGG	3 cut(s)	86, 190, 322
AflIII	ACRYGT	1 cut(s)	147
AjnI	CCWGG	1 cut(s)	303
AluBI	AGCT	2 cut(s)	45, 408
AluI	AGCT	2 cut(s)	45, 408
Alw26I	GTCTC	2 cut(s)	101, 325
Ama87I	CYCGRG	1 cut(s)	322
Aor13HI	TCCGGA	1 cut(s)	390
AoxI	GGCC	2 cut(s)	123, 313
ApeKI	GCWGC	1 cut(s)	349
AspLEI	GCGC	1 cut(s)	330
AspS9I	GGNCC	3 cut(s)	77, 123, 396
AsuC2I	CCSGG	4 cut(s)	122, 191, 200, 357
AsuHPI	GGTGA	1 cut(s)	160
AvaI	CYCGRG	1 cut(s)	322
AvaII	GGWCC	2 cut(s)	77, 396
BanI	GGYRCC	1 cut(s)	327
BbrPI	CACGTG	1 cut(s)	150
BbsI	GAAGAC	2 cut(s)	210, 228
BbvI	GCAGC	1 cut(s)	361
BceAI	ACGGC	1 cut(s)	110
BciT130I	CCWGG	1 cut(s)	305
BcnI	CCSGG	4 cut(s)	122, 191, 200, 357
BcoDI	GTCTC	2 cut(s)	101, 325
BfaI	CTAG	1 cut(s)	409
BfoI	RGCGCY	1 cut(s)	331
BfuAI	ACCTGC	1 cut(s)	179
BisI	GCNGC	3 cut(s)	184, 316, 350
BlpI	GCTNAGC	1 cut(s)	24
BlsI	GCNGC	3 cut(s)	185, 317, 351
Bme1390I	CCNGG	5 cut(s)	122, 191, 200, 305, 357
Bme18I	GGWCC	2 cut(s)	77, 396
BmeT110I	CYCGRG	1 cut(s)	322
BmgT120I	GGNCC	3 cut(s)	77, 123, 396
BmiI	GGNNCC	4 cut(s)	64, 329, 361, 398
BmrFI	CCNGG	5 cut(s)	122, 191, 200, 305, 357
BpiI	GAAGAC	2 cut(s)	210, 228
Bpu1102I	GCTNAGC	1 cut(s)	24
BpuMI	CCSGG	4 cut(s)	122, 191, 200, 357
BsaAI	YACGTR	1 cut(s)	150
BsaHI	GRCGYC	4 cut(s)	159, 225, 279, 328
BsaI	GGTCTC	1 cut(s)	101
BsaJI	CCNNGG	2 cut(s)	304, 342
BsaWI	WCCGGW	2 cut(s)	74, 390
BsaXI	ACNNNNNCTCC	2 cut(s)	64, 94
Bsc4I	CCNNNNNNNGG	3 cut(s)	86, 190, 322
BseAI	TCCGGA	1 cut(s)	390
BseBI	CCWGG	1 cut(s)	305
BseDI	CCNNGG	2 cut(s)	304, 342
BseGI	GGATG	1 cut(s)	207
BseLI	CCNNNNNNNGG	3 cut(s)	86, 190, 322
BseRI	GAGGAG	5 cut(s)	5, 149, 325, 352, 355
BseX3I	CGGCCG	1 cut(s)	313
BseXI	GCAGC	1 cut(s)	361
BseYI	CCCAGC	1 cut(s)	83
Bsh1236I	CGCG	1 cut(s)	318
Bsh1285I	CGRYCG	2 cut(s)	121, 316
BshFI	GGCC	2 cut(s)	125, 315
BshNI	GGYRCC	1 cut(s)	327
BsiEI	CGRYCG	2 cut(s)	121, 316
BsiHKCI	CYCGRG	1 cut(s)	322
BsiSI	CCGG	6 cut(s)	75, 121, 190, 200, 357, 391
BslFI	GGGAC	1 cut(s)	382
BslI	CCNNNNNNNGG	3 cut(s)	86, 190, 322
BsmAI	GTCTC	2 cut(s)	101, 325
BsmBI	CGTCTC	1 cut(s)	325
BsmFI	GGGAC	1 cut(s)	382
BsnI	GGCC	2 cut(s)	125, 315
Bso31I	GGTCTC	1 cut(s)	101
BsoBI	CYCGRG	1 cut(s)	322
Bsp13I	TCCGGA	1 cut(s)	390
Bsp1720I	GCTNAGC	1 cut(s)	24
BspACI	CCGC	8 cut(s)	39, 87, 92, 176, 184, 236, 316, 339
BspANI	GGCC	2 cut(s)	125, 315
BspEI	TCCGGA	1 cut(s)	390
BspFNI	CGCG	1 cut(s)	318
BspLI	GGNNCC	4 cut(s)	64, 329, 361, 398
BspMI	ACCTGC	1 cut(s)	179
BspT107I	GGYRCC	1 cut(s)	327
BspTNI	GGTCTC	1 cut(s)	101
BsrBI	CCGCTC	1 cut(s)	178
BssECI	CCNNGG	2 cut(s)	304, 342
BssNI	GRCGYC	4 cut(s)	159, 225, 279, 328
BssT1I	CCWWGG	1 cut(s)	342
Bst2UI	CCWGG	1 cut(s)	305
BstACI	GRCGYC	4 cut(s)	159, 225, 279, 328
BstBAI	YACGTR	1 cut(s)	150
BstC8I	GCNNGC	2 cut(s)	176, 254
BstDEI	CTNAG	1 cut(s)	24
BstF5I	GGATG	1 cut(s)	207
BstFNI	CGCG	1 cut(s)	318
BstH2I	RGCGCY	1 cut(s)	331
BstHHI	GCGC	1 cut(s)	330
BstMAI	GTCTC	2 cut(s)	101, 325
BstMCI	CGRYCG	2 cut(s)	121, 316
BstMWI	GCNNNNNNNGC	1 cut(s)	180
BstNI	CCWGG	1 cut(s)	305
BstSCI	CCNGG	5 cut(s)	120, 189, 198, 303, 355
BstUI	CGCG	1 cut(s)	318
BstV1I	GCAGC	1 cut(s)	361
BstV2I	GAAGAC	2 cut(s)	210, 228
BstZI	CGGCCG	1 cut(s)	313
BsuRI	GGCC	2 cut(s)	125, 315
BtsCI	GGATG	1 cut(s)	207
BtsI	GCAGTG	1 cut(s)	28
BtsIMutI	CAGTG	1 cut(s)	28
BveI	ACCTGC	1 cut(s)	179
Cac8I	GCNNGC	2 cut(s)	176, 254
CfoI	GCGC	1 cut(s)	330
Cfr13I	GGNCC	3 cut(s)	77, 123, 396
CseI	GACGC	4 cut(s)	130, 167, 233, 307
CviJI	RGCY	8 cut(s)	45, 125, 154, 252, 256, 315, 360, 408
CviKI_1	RGCY	8 cut(s)	45, 125, 154, 252, 256, 315, 360, 408
DdeI	CTNAG	1 cut(s)	24
DinI	GGCGCC	1 cut(s)	329
DrdI	GACNNNNNNGTC	1 cut(s)	125
DseDI	GACNNNNNNGTC	1 cut(s)	125
EaeI	YGGCCR	1 cut(s)	313
EagI	CGGCCG	1 cut(s)	313
EciI	GGCGGA	1 cut(s)	328
EclXI	CGGCCG	1 cut(s)	313
Eco130I	CCWWGG	1 cut(s)	342
Eco31I	GGTCTC	1 cut(s)	101
Eco47I	GGWCC	2 cut(s)	77, 396
Eco52I	CGGCCG	1 cut(s)	313
Eco72I	CACGTG	1 cut(s)	150
Eco88I	CYCGRG	1 cut(s)	322
EcoO109I	RGGNCCY	1 cut(s)	396
EcoRII	CCWGG	1 cut(s)	303
EcoT14I	CCWWGG	1 cut(s)	342
EgeI	GGCGCC	1 cut(s)	329
EheI	GGCGCC	1 cut(s)	329
ErhI	CCWWGG	1 cut(s)	342
Esp3I	CGTCTC	1 cut(s)	325
FaiI	YATR	1 cut(s)	287
FaqI	GGGAC	1 cut(s)	382
FauI	CCCGC	4 cut(s)	80, 85, 183, 243
FblI	GTMKAC	1 cut(s)	195
Fnu4HI	GCNGC	3 cut(s)	184, 316, 350
FokI	GGATG	1 cut(s)	194
Fsp4HI	GCNGC	3 cut(s)	184, 316, 350
FspBI	CTAG	1 cut(s)	409
GlaI	GCGC	1 cut(s)	329
GluI	GCNGC	3 cut(s)	184, 316, 350
GsaI	CCCAGC	1 cut(s)	87
HaeII	RGCGCY	1 cut(s)	331
HaeIII	GGCC	2 cut(s)	125, 315
HapII	CCGG	6 cut(s)	75, 121, 190, 200, 357, 391
HgaI	GACGC	4 cut(s)	130, 167, 233, 307
HhaI	GCGC	1 cut(s)	330
Hin1I	GRCGYC	4 cut(s)	159, 225, 279, 328
Hin6I	GCGC	1 cut(s)	328
HinP1I	GCGC	1 cut(s)	328
HincII	GTYRAC	1 cut(s)	196
HindII	GTYRAC	1 cut(s)	196
HinfI	GANTC	3 cut(s)	231, 262, 309
HpaII	CCGG	6 cut(s)	75, 121, 190, 200, 357, 391
HphI	GGTGA	1 cut(s)	160
Hpy166II	GTNNAC	2 cut(s)	145, 196
Hpy188I	TCNGA	1 cut(s)	59
Hpy188III	TCNNGA	2 cut(s)	371, 391
Hpy8I	GTNNAC	2 cut(s)	145, 196
Hpy99I	CGWCG	6 cut(s)	53, 131, 134, 161, 281, 284
HpyCH4IV	ACGT	2 cut(s)	149, 279
HpyCH4V	TGCA	1 cut(s)	33
HpyF10VI	GCNNNNNNNGC	1 cut(s)	180
HpyF3I	CTNAG	1 cut(s)	24
HpySE526I	ACGT	2 cut(s)	149, 279
Hsp92I	GRCGYC	4 cut(s)	159, 225, 279, 328
HspAI	GCGC	1 cut(s)	328
KasI	GGCGCC	1 cut(s)	327
Kpn2I	TCCGGA	1 cut(s)	390
LmnI	GCTCC	2 cut(s)	346, 365
Lsp1109I	GCAGC	1 cut(s)	361
MaeI	CTAG	1 cut(s)	409
MaeII	ACGT	2 cut(s)	149, 279
MbiI	CCGCTC	1 cut(s)	178
MboII	GAAGA	2 cut(s)	215, 233
Mly113I	GGCGCC	1 cut(s)	328
MlyI	GAGTC	1 cut(s)	256
MroI	TCCGGA	1 cut(s)	390
MspA1I	CMGCKG	1 cut(s)	87
MspI	CCGG	6 cut(s)	75, 121, 190, 200, 357, 391
MspR9I	CCNGG	5 cut(s)	122, 191, 200, 305, 357
MvaI	CCWGG	1 cut(s)	305
MvnI	CGCG	1 cut(s)	318
MwoI	GCNNNNNNNGC	1 cut(s)	180
NarI	GGCGCC	1 cut(s)	328
NciI	CCSGG	4 cut(s)	122, 191, 200, 357
NlaIV	GGNNCC	4 cut(s)	64, 329, 361, 398
PaqCI	CACCTGC	1 cut(s)	179
PcsI	WCGNNNNNNNCGW	2 cut(s)	123, 138
PfeI	GAWTC	2 cut(s)	231, 309
PflFI	GACNNNGTC	1 cut(s)	281
PkrI	GCNGC	3 cut(s)	185, 317, 351
PleI	GAGTC	1 cut(s)	256
PluTI	GGCGCC	1 cut(s)	331
PmaCI	CACGTG	1 cut(s)	150
PmlI	CACGTG	1 cut(s)	150
PpsI	GAGTC	1 cut(s)	256
Ppu21I	YACGTR	1 cut(s)	150
PpuMI	RGGWCCY	1 cut(s)	396
Psp5II	RGGWCCY	1 cut(s)	396
Psp6I	CCWGG	1 cut(s)	303
PspCI	CACGTG	1 cut(s)	150
PspFI	CCCAGC	1 cut(s)	83
PspGI	CCWGG	1 cut(s)	303
PspN4I	GGNNCC	4 cut(s)	64, 329, 361, 398
PspPI	GGNCC	3 cut(s)	77, 123, 396
PspPPI	RGGWCCY	1 cut(s)	396
PsyI	GACNNNGTC	1 cut(s)	281
SalI	GTCGAC	1 cut(s)	194
SatI	GCNGC	3 cut(s)	184, 316, 350
Sau96I	GGNCC	3 cut(s)	77, 123, 396
SchI	GAGTC	1 cut(s)	256
ScrFI	CCNGG	5 cut(s)	122, 191, 200, 305, 357
SetI	ASST	8 cut(s)	47, 82, 152, 173, 282, 306, 398, 410
SfoI	GGCGCC	1 cut(s)	329
SinI	GGWCC	2 cut(s)	77, 396
SsiI	CCGC	8 cut(s)	39, 87, 92, 176, 184, 236, 316, 339
SspDI	GGCGCC	1 cut(s)	327
SspMI	CTAG	1 cut(s)	409
StyD4I	CCNGG	5 cut(s)	120, 189, 198, 303, 355
StyI	CCWWGG	1 cut(s)	342
TaiI	ACGT	2 cut(s)	152, 282
TaqI	TCGA	7 cut(s)	117, 132, 156, 195, 219, 294, 402
TauI	GCSGC	2 cut(s)	186, 318
TfiI	GAWTC	2 cut(s)	231, 309
TscAI	CASTG	1 cut(s)	35
TseI	GCWGC	1 cut(s)	349
TspGWI	ACGGA	1 cut(s)	89
TspRI	CASTG	1 cut(s)	35
Tth111I	GACNNNGTC	1 cut(s)	281
VpaK11BI	GGWCC	2 cut(s)	77, 396
XmiI	GTMKAC	1 cut(s)	195
XspI	CTAG	1 cut(s)	409
ZraI	GACGTC	1 cut(s)	280

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.