Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0002352

Physical Location & Seq

Genomic Coordinates Reverse (-)

27189904 .. 27190433

Gene Structure 530 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG271300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

ATGTTTCTTCTCCTCCTCTACGCCAAGCACTGCAAGCGCGGCAGCTTCGTCGTCATCGGAGGAACCACCGACTCCGGACCTCCCAGCTGGGCGGGTCTCCGTAAAAACTCCGGAATCGACCGGGCCGTCGTCGAGGAGTGCGTCAACACGTGGCTCGACCCCCACTCCACCTGCCCGCTCTGCCGCTACCGGGTCAACCCGAAAGACATCCTCCTAATCGAAGACGCCAGAATCCTGCACTACCAGAACAGCCAGCCCCAGACTCCCCACCAAAACGACGTCGTCATCAACATCGAAACTGACCTGGGAATCTGCCGCGTCTTAGGGCGCCACTCCTCCGCCTTGGAGCAGCGACCCGGCTCCTCCTCTCACGACAATACGTCGTCATTCCGGAGGTCCCTCTACAGCTGGACCTGGTTCCAGAAAAAAAAACCGAACCTGCGGTCGCCGCCGGAAGCCAAGAACGTCCTAGAAAAGACGACCTCCTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

163

Amino Acids

18.48

Weight (kDa)

9.22

Isoelectric Point (pI)

56.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002352)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G05810
fragaria_vesca	FvH4_4g06660
malus_domestica	MD13G1236900.v1.1 MD16G1242200.v1.1
prunus_persica	Prupe.1G069300_v2.0.a1
pyrus_communis	pycom13g20980 pycom16g20300
rosa_chinensis	RchiOBHm_Chr3g0495141 RchiOBHm_Chr4g0398561
rosa_laevigata	RLG00000009344 RLG00000026064 RLG00000029692 RLG00000030599 RLG00000032695 RLG00000032696
rosa_multiflora	Rmu_co8139468.1_g000001 Rmu_co8270033.1_g000001 Rmu_co8275827.1_g000001 Rmu_sc0000185.1_g000029 Rmu_sc0000990.1_g000016 Rmu_sc0005217.1_g000007 Rmu_sc0005996.1_g000027 Rmu_sc0009001.1_g000015 Rmu_sc0013727.1_g000001 Rmu_sc0016350.1_g000001
rosa_roxburghii	Rroxscaffold_5G00343530
rosa_rugosa	Rorug04G0009400
rosa_samantha	Rh1AG207300 Rh2AG231000 Rh2AG449700 Rh2CG436600 Rh2DG238800 Rh3DG271300 Rh4AG087300 Rh4BG083900 Rh4CG095500 Rh4DG078800 Rh4DG124400 Rh5DG085200 Rh6BG230400
rosa_wichuraiana	Rw1G018260 Rw1G018370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	179
AasI	GACNNNNNNGTC	1 cut(s)	125
AatII	GACGTC	1 cut(s)	282
Acc36I	ACCTGC	2 cut(s)	179, 447
AccB1I	GGYRCC	1 cut(s)	327
AccBSI	CCGCTC	1 cut(s)	178
AccII	CGCG	2 cut(s)	39, 318
AccIII	TCCGGA	3 cut(s)	74, 110, 390
AciI	CCGC	8 cut(s)	39, 92, 176, 184, 316, 339, 442, 449
AcvI	CACGTG	1 cut(s)	150
AcyI	GRCGYC	3 cut(s)	225, 279, 328
AfiI	CCNNNNNNNGG	1 cut(s)	190
AflIII	ACRYGT	1 cut(s)	147
AhdI	GACNNNNNGTC	1 cut(s)	379
AjnI	CCWGG	2 cut(s)	303, 413
AluBI	AGCT	3 cut(s)	45, 87, 408
AluI	AGCT	3 cut(s)	45, 87, 408
Alw26I	GTCTC	1 cut(s)	101
Aor13HI	TCCGGA	3 cut(s)	74, 110, 390
AoxI	GGCC	1 cut(s)	123
ApeKI	GCWGC	2 cut(s)	42, 349
ArsI	GACNNNNNNTTYG	2 cut(s)	428, 460
AspLEI	GCGC	2 cut(s)	39, 330
AspS9I	GGNCC	4 cut(s)	77, 123, 396, 411
AsuC2I	CCSGG	3 cut(s)	122, 191, 357
AvaII	GGWCC	3 cut(s)	77, 396, 411
BanI	GGYRCC	1 cut(s)	327
BbrPI	CACGTG	1 cut(s)	150
BbsI	GAAGAC	1 cut(s)	228
BbvI	GCAGC	2 cut(s)	54, 361
BceAI	ACGGC	1 cut(s)	110
BcgI	CGANNNNNNTGC	2 cut(s)	31, 65
BciT130I	CCWGG	2 cut(s)	305, 415
BcnI	CCSGG	3 cut(s)	122, 191, 357
BcoDI	GTCTC	1 cut(s)	101
BfaI	CTAG	1 cut(s)	470
BfmI	CTRYAG	1 cut(s)	403
BfoI	RGCGCY	1 cut(s)	331
BfuAI	ACCTGC	2 cut(s)	179, 447
BisI	GCNGC	6 cut(s)	40, 43, 184, 316, 350, 449
BlsI	GCNGC	6 cut(s)	41, 44, 185, 317, 351, 450
Bme1390I	CCNGG	5 cut(s)	122, 191, 305, 357, 415
Bme18I	GGWCC	3 cut(s)	77, 396, 411
BmeRI	GACNNNNNGTC	1 cut(s)	379
BmgT120I	GGNCC	4 cut(s)	77, 123, 396, 411
BmiI	GGNNCC	5 cut(s)	64, 329, 361, 398, 419
BmrFI	CCNGG	5 cut(s)	122, 191, 305, 357, 415
BpiI	GAAGAC	1 cut(s)	228
BpuMI	CCSGG	3 cut(s)	122, 191, 357
BsaAI	YACGTR	1 cut(s)	150
BsaHI	GRCGYC	3 cut(s)	225, 279, 328
BsaI	GGTCTC	1 cut(s)	101
BsaJI	CCNNGG	2 cut(s)	304, 342
BsaWI	WCCGGW	3 cut(s)	74, 110, 390
BsaXI	ACNNNNNCTCC	2 cut(s)	149, 179
Bsc4I	CCNNNNNNNGG	1 cut(s)	190
BseAI	TCCGGA	3 cut(s)	74, 110, 390
BseBI	CCWGG	2 cut(s)	305, 415
BseDI	CCNNGG	2 cut(s)	304, 342
BseGI	GGATG	1 cut(s)	207
BseLI	CCNNNNNNNGG	1 cut(s)	190
BseRI	GAGGAG	5 cut(s)	5, 149, 325, 352, 355
BseXI	GCAGC	2 cut(s)	54, 361
BseYI	CCCAGC	2 cut(s)	83, 87
BsgI	GTGCAG	1 cut(s)	221
Bsh1236I	CGCG	2 cut(s)	39, 318
Bsh1285I	CGRYCG	2 cut(s)	121, 446
BshFI	GGCC	1 cut(s)	125
BshNI	GGYRCC	1 cut(s)	327
BsiEI	CGRYCG	2 cut(s)	121, 446
BsiSI	CCGG	7 cut(s)	75, 111, 121, 190, 357, 391, 452
BslFI	GGGAC	1 cut(s)	382
BslI	CCNNNNNNNGG	1 cut(s)	190
BsmAI	GTCTC	1 cut(s)	101
BsmFI	GGGAC	1 cut(s)	382
BsnI	GGCC	1 cut(s)	125
Bso31I	GGTCTC	1 cut(s)	101
Bsp13I	TCCGGA	3 cut(s)	74, 110, 390
BspACI	CCGC	8 cut(s)	39, 92, 176, 184, 316, 339, 442, 449
BspANI	GGCC	1 cut(s)	125
BspEI	TCCGGA	3 cut(s)	74, 110, 390
BspFNI	CGCG	2 cut(s)	39, 318
BspLI	GGNNCC	5 cut(s)	64, 329, 361, 398, 419
BspMI	ACCTGC	2 cut(s)	179, 447
BspT107I	GGYRCC	1 cut(s)	327
BspTNI	GGTCTC	1 cut(s)	101
BsrBI	CCGCTC	1 cut(s)	178
BssECI	CCNNGG	2 cut(s)	304, 342
BssNI	GRCGYC	3 cut(s)	225, 279, 328
BssT1I	CCWWGG	1 cut(s)	342
Bst2UI	CCWGG	2 cut(s)	305, 415
BstACI	GRCGYC	3 cut(s)	225, 279, 328
BstBAI	YACGTR	1 cut(s)	150
BstC8I	GCNNGC	3 cut(s)	35, 176, 254
BstDEI	CTNAG	1 cut(s)	322
BstF5I	GGATG	1 cut(s)	207
BstFNI	CGCG	2 cut(s)	39, 318
BstH2I	RGCGCY	1 cut(s)	331
BstHHI	GCGC	2 cut(s)	39, 330
BstMAI	GTCTC	1 cut(s)	101
BstMCI	CGRYCG	2 cut(s)	121, 446
BstMWI	GCNNNNNNNGC	4 cut(s)	34, 39, 180, 448
BstNI	CCWGG	2 cut(s)	305, 415
BstSCI	CCNGG	5 cut(s)	120, 189, 303, 355, 413
BstSFI	CTRYAG	1 cut(s)	403
BstUI	CGCG	2 cut(s)	39, 318
BstV1I	GCAGC	2 cut(s)	54, 361
BstV2I	GAAGAC	1 cut(s)	228
BsuRI	GGCC	1 cut(s)	125
BtsCI	GGATG	1 cut(s)	207
BtsI	GCAGTG	1 cut(s)	28
BtsIMutI	CAGTG	1 cut(s)	28
BveI	ACCTGC	2 cut(s)	179, 447
Cac8I	GCNNGC	3 cut(s)	35, 176, 254
CfoI	GCGC	2 cut(s)	39, 330
Cfr13I	GGNCC	4 cut(s)	77, 123, 396, 411
CseI	GACGC	3 cut(s)	130, 233, 307
CsiI	ACCWGGT	1 cut(s)	413
CviJI	RGCY	9 cut(s)	45, 87, 125, 154, 252, 256, 360, 408, 458
CviKI_1	RGCY	9 cut(s)	45, 87, 125, 154, 252, 256, 360, 408, 458
DdeI	CTNAG	1 cut(s)	322
DinI	GGCGCC	1 cut(s)	329
DrdI	GACNNNNNNGTC	1 cut(s)	125
DriI	GACNNNNNGTC	1 cut(s)	379
DseDI	GACNNNNNNGTC	1 cut(s)	125
Eam1105I	GACNNNNNGTC	1 cut(s)	379
EciI	GGCGGA	1 cut(s)	328
Eco130I	CCWWGG	1 cut(s)	342
Eco31I	GGTCTC	1 cut(s)	101
Eco47I	GGWCC	3 cut(s)	77, 396, 411
Eco72I	CACGTG	1 cut(s)	150
EcoO109I	RGGNCCY	1 cut(s)	396
EcoRII	CCWGG	2 cut(s)	303, 413
EcoT14I	CCWWGG	1 cut(s)	342
EgeI	GGCGCC	1 cut(s)	329
EheI	GGCGCC	1 cut(s)	329
ErhI	CCWWGG	1 cut(s)	342
FaqI	GGGAC	1 cut(s)	382
FauI	CCCGC	2 cut(s)	85, 183
Fnu4HI	GCNGC	6 cut(s)	40, 43, 184, 316, 350, 449
FokI	GGATG	1 cut(s)	194
Fsp4HI	GCNGC	6 cut(s)	40, 43, 184, 316, 350, 449
FspBI	CTAG	1 cut(s)	470
GlaI	GCGC	2 cut(s)	38, 329
GluI	GCNGC	6 cut(s)	40, 43, 184, 316, 350, 449
GsaI	CCCAGC	2 cut(s)	87, 91
HaeII	RGCGCY	1 cut(s)	331
HaeIII	GGCC	1 cut(s)	125
HapII	CCGG	7 cut(s)	75, 111, 121, 190, 357, 391, 452
HgaI	GACGC	3 cut(s)	130, 233, 307
HhaI	GCGC	2 cut(s)	39, 330
Hin1I	GRCGYC	3 cut(s)	225, 279, 328
Hin6I	GCGC	2 cut(s)	37, 328
HinP1I	GCGC	2 cut(s)	37, 328
HincII	GTYRAC	2 cut(s)	145, 196
HindII	GTYRAC	2 cut(s)	145, 196
HinfI	GANTC	5 cut(s)	71, 114, 231, 262, 309
HpaII	CCGG	7 cut(s)	75, 111, 121, 190, 357, 391, 452
Hpy166II	GTNNAC	2 cut(s)	145, 196
Hpy188I	TCNGA	1 cut(s)	59
Hpy188III	TCNNGA	5 cut(s)	75, 111, 371, 391, 421
Hpy8I	GTNNAC	2 cut(s)	145, 196
Hpy99I	CGWCG	6 cut(s)	53, 131, 134, 281, 284, 385
HpyCH4IV	ACGT	4 cut(s)	149, 279, 380, 465
HpyCH4V	TGCA	2 cut(s)	33, 238
HpyF10VI	GCNNNNNNNGC	4 cut(s)	34, 39, 180, 448
HpyF3I	CTNAG	1 cut(s)	322
HpySE526I	ACGT	4 cut(s)	149, 279, 380, 465
Hsp92I	GRCGYC	3 cut(s)	225, 279, 328
HspAI	GCGC	2 cut(s)	37, 328
KasI	GGCGCC	1 cut(s)	327
Kpn2I	TCCGGA	3 cut(s)	74, 110, 390
LmnI	GCTCC	2 cut(s)	346, 365
Lsp1109I	GCAGC	2 cut(s)	54, 361
MabI	ACCWGGT	1 cut(s)	413
MaeI	CTAG	1 cut(s)	470
MaeII	ACGT	4 cut(s)	149, 279, 380, 465
MbiI	CCGCTC	1 cut(s)	178
MboII	GAAGA	1 cut(s)	233
Mly113I	GGCGCC	1 cut(s)	328
MlyI	GAGTC	2 cut(s)	65, 256
MroI	TCCGGA	3 cut(s)	74, 110, 390
MseI	TTAA	1 cut(s)	490
MspA1I	CMGCKG	2 cut(s)	87, 408
MspI	CCGG	7 cut(s)	75, 111, 121, 190, 357, 391, 452
MspR9I	CCNGG	5 cut(s)	122, 191, 305, 357, 415
MvaI	CCWGG	2 cut(s)	305, 415
MvnI	CGCG	2 cut(s)	39, 318
MwoI	GCNNNNNNNGC	4 cut(s)	34, 39, 180, 448
NarI	GGCGCC	1 cut(s)	328
NciI	CCSGG	3 cut(s)	122, 191, 357
NlaIV	GGNNCC	5 cut(s)	64, 329, 361, 398, 419
PaqCI	CACCTGC	1 cut(s)	179
PcsI	WCGNNNNNNNCGW	2 cut(s)	123, 138
PfeI	GAWTC	3 cut(s)	114, 231, 309
PflFI	GACNNNGTC	1 cut(s)	281
PkrI	GCNGC	6 cut(s)	41, 44, 185, 317, 351, 450
PleI	GAGTC	2 cut(s)	65, 256
PluTI	GGCGCC	1 cut(s)	331
PmaCI	CACGTG	1 cut(s)	150
PmlI	CACGTG	1 cut(s)	150
PpsI	GAGTC	2 cut(s)	65, 256
Ppu21I	YACGTR	1 cut(s)	150
PpuMI	RGGWCCY	1 cut(s)	396
Psp5II	RGGWCCY	1 cut(s)	396
Psp6I	CCWGG	2 cut(s)	303, 413
PspCI	CACGTG	1 cut(s)	150
PspFI	CCCAGC	2 cut(s)	83, 87
PspGI	CCWGG	2 cut(s)	303, 413
PspN4I	GGNNCC	5 cut(s)	64, 329, 361, 398, 419
PspPI	GGNCC	4 cut(s)	77, 123, 396, 411
PspPPI	RGGWCCY	1 cut(s)	396
PsyI	GACNNNGTC	1 cut(s)	281
PvuII	CAGCTG	2 cut(s)	87, 408
SaqAI	TTAA	1 cut(s)	490
SatI	GCNGC	6 cut(s)	40, 43, 184, 316, 350, 449
Sau96I	GGNCC	4 cut(s)	77, 123, 396, 411
SchI	GAGTC	2 cut(s)	65, 256
ScrFI	CCNGG	5 cut(s)	122, 191, 305, 357, 415
SexAI	ACCWGGT	1 cut(s)	413
SfcI	CTRYAG	1 cut(s)	403
SfoI	GGCGCC	1 cut(s)	329
SinI	GGWCC	3 cut(s)	77, 396, 411
SsiI	CCGC	8 cut(s)	39, 92, 176, 184, 316, 339, 442, 449
SspDI	GGCGCC	1 cut(s)	327
SspMI	CTAG	1 cut(s)	470
StyD4I	CCNGG	5 cut(s)	120, 189, 303, 355, 413
StyI	CCWWGG	1 cut(s)	342
TaiI	ACGT	4 cut(s)	152, 282, 383, 468
TaqI	TCGA	5 cut(s)	117, 132, 156, 219, 294
TauI	GCSGC	4 cut(s)	42, 186, 318, 451
TfiI	GAWTC	3 cut(s)	114, 231, 309
Tru1I	TTAA	1 cut(s)	490
Tru9I	TTAA	1 cut(s)	490
TscAI	CASTG	1 cut(s)	35
TseI	GCWGC	2 cut(s)	42, 349
TspGWI	ACGGA	1 cut(s)	89
TspRI	CASTG	1 cut(s)	35
Tth111I	GACNNNGTC	1 cut(s)	281
VpaK11BI	GGWCC	3 cut(s)	77, 396, 411
XspI	CTAG	1 cut(s)	470
ZraI	GACGTC	1 cut(s)	280

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.