Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8139468.1

Orthogroup ID

OG0002352

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 639

Gene Structure 639 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8139468.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

atgggctgccttctctttctctctctcaagcccaccaccaccgccgccgccgccttcttcgttcttctaatcaccctcctctcttttctctctacaccctccaatgccgaccccgaccccgacccgaaaatcggcggcattgccacaacgtatgcttcaccgccgccacctgtacttaatgtggacaccgccgagaagcccaagtcgttccggcccagcatggccatcatggtcggagttctcacgactctgttctccttcacgtttcttctcctcctctacgccaagcactgcaagcgcggcagcttcgtcgtcatcggaggaaccgccgactccggacctcccggcggggcgggtctccgtaaaaactccggaatcgaccgggccgtcgtcgagtccctcccggttttccggttcaggtcgctccggggacacaaggacggcctcgaatgcgccgtctgcctcacccgattcgagcccaccgaggtcctccgcctcctcccgaaatgcaagcacgccttccacgtcgagtgcgtcgacacgtggctcgacgcccactccacctgcccgctctgccgctaccgggtcgacccggaagacatcctcctaatcgaagacgccagaatcctgcaccaccag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

213

Amino Acids

23.2

Weight (kDa)

8.13

Isoelectric Point (pI)

39.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002352)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G05810
fragaria_vesca	FvH4_4g06660
malus_domestica	MD13G1236900.v1.1 MD16G1242200.v1.1
prunus_persica	Prupe.1G069300_v2.0.a1
pyrus_communis	pycom13g20980 pycom16g20300
rosa_chinensis	RchiOBHm_Chr3g0495141 RchiOBHm_Chr4g0398561
rosa_laevigata	RLG00000009344 RLG00000026064 RLG00000029692 RLG00000030599 RLG00000032695 RLG00000032696
rosa_multiflora	Rmu_co8139468.1_g000001 Rmu_co8270033.1_g000001 Rmu_co8275827.1_g000001 Rmu_sc0000185.1_g000029 Rmu_sc0000990.1_g000016 Rmu_sc0005217.1_g000007 Rmu_sc0005996.1_g000027 Rmu_sc0009001.1_g000015 Rmu_sc0013727.1_g000001 Rmu_sc0016350.1_g000001
rosa_roxburghii	Rroxscaffold_5G00343530
rosa_rugosa	Rorug04G0009400
rosa_samantha	Rh1AG207300 Rh2AG231000 Rh2AG449700 Rh2CG436600 Rh2DG238800 Rh3DG271300 Rh4AG087300 Rh4BG083900 Rh4CG095500 Rh4DG078800 Rh4DG124400 Rh5DG085200 Rh6BG230400
rosa_wichuraiana	Rw1G018260 Rw1G018370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	572
AasI	GACNNNNNNGTC	1 cut(s)	386
Acc36I	ACCTGC	1 cut(s)	572
AccBSI	CCGCTC	1 cut(s)	571
AccI	GTMKAC	2 cut(s)	537, 588
AccII	CGCG	1 cut(s)	300
AccIII	TCCGGA	2 cut(s)	335, 371
AcoI	YGGCCR	1 cut(s)	222
AcvI	CACGTG	1 cut(s)	543
AcyI	GRCGYC	2 cut(s)	552, 618
AfaI	GTAC	1 cut(s)	174
AfiI	CCNNNNNNNGG	3 cut(s)	131, 347, 583
AflIII	ACRYGT	1 cut(s)	540
AjiI	CACGTC	1 cut(s)	526
AluBI	AGCT	1 cut(s)	306
AluI	AGCT	1 cut(s)	306
Alw26I	GTCTC	1 cut(s)	362
Aor13HI	TCCGGA	2 cut(s)	335, 371
AoxI	GGCC	4 cut(s)	212, 222, 384, 442
ApeKI	GCWGC	2 cut(s)	6, 303
ArsI	GACNNNNNNTTYG	2 cut(s)	441, 473
AspLEI	GCGC	2 cut(s)	300, 455
AspS9I	GGNCC	4 cut(s)	213, 338, 384, 487
AsuC2I	CCSGG	6 cut(s)	345, 383, 404, 428, 584, 593
AsuHPI	GGTGA	3 cut(s)	64, 150, 457
AvaII	GGWCC	2 cut(s)	338, 487
BalI	TGGCCA	1 cut(s)	224
BanII	GRGCYC	1 cut(s)	480
BbrPI	CACGTG	1 cut(s)	543
BbsI	GAAGAC	2 cut(s)	603, 621
BbvI	GCAGC	1 cut(s)	315
BccI	CCATC	1 cut(s)	233
BceAI	ACGGC	3 cut(s)	371, 440, 457
BcgI	CGANNNNNNTGC	2 cut(s)	292, 326
BcnI	CCSGG	6 cut(s)	345, 383, 404, 428, 584, 593
BcoDI	GTCTC	1 cut(s)	362
BfuAI	ACCTGC	1 cut(s)	572
BisI	GCNGC	9 cut(s)	7, 45, 48, 51, 136, 164, 301, 304, 577
BlsI	GCNGC	9 cut(s)	8, 46, 49, 52, 137, 165, 302, 305, 578
Bme1390I	CCNGG	6 cut(s)	345, 383, 404, 428, 584, 593
Bme18I	GGWCC	2 cut(s)	338, 487
BmgBI	CACGTC	1 cut(s)	526
BmgT120I	GGNCC	4 cut(s)	213, 338, 384, 487
BmiI	GGNNCC	1 cut(s)	325
BmrFI	CCNGG	6 cut(s)	345, 383, 404, 428, 584, 593
BpiI	GAAGAC	2 cut(s)	603, 621
BpuEI	CTTGAG	1 cut(s)	11
BpuMI	CCSGG	6 cut(s)	345, 383, 404, 428, 584, 593
BsaAI	YACGTR	1 cut(s)	543
BsaHI	GRCGYC	2 cut(s)	552, 618
BsaI	GGTCTC	1 cut(s)	362
BsaJI	CCNNGG	2 cut(s)	427, 483
BsaWI	WCCGGW	3 cut(s)	335, 371, 411
BsaXI	ACNNNNNCTCC	2 cut(s)	542, 572
Bsc4I	CCNNNNNNNGG	3 cut(s)	131, 347, 583
Bse3DI	GCAATG	1 cut(s)	138
BseAI	TCCGGA	2 cut(s)	335, 371
BseDI	CCNNGG	2 cut(s)	427, 483
BseGI	GGATG	1 cut(s)	600
BseLI	CCNNNNNNNGG	3 cut(s)	131, 347, 583
BseMI	GCAATG	1 cut(s)	138
BseRI	GAGGAG	4 cut(s)	68, 263, 266, 488
BseXI	GCAGC	1 cut(s)	315
BseYI	CCCAGC	1 cut(s)	215
BsgI	GTGCAG	1 cut(s)	614
Bsh1236I	CGCG	1 cut(s)	300
Bsh1285I	CGRYCG	1 cut(s)	382
BshFI	GGCC	4 cut(s)	214, 224, 386, 444
BsiEI	CGRYCG	1 cut(s)	382
BslFI	GGGAC	2 cut(s)	382, 444
BslI	CCNNNNNNNGG	3 cut(s)	131, 347, 583
BsmAI	GTCTC	1 cut(s)	362
BsmFI	GGGAC	2 cut(s)	382, 444
BsmI	GAATGC	1 cut(s)	455
BsnI	GGCC	4 cut(s)	214, 224, 386, 444
Bso31I	GGTCTC	1 cut(s)	362
Bsp1286I	GDGCHC	1 cut(s)	480
Bsp13I	TCCGGA	2 cut(s)	335, 371
BspANI	GGCC	4 cut(s)	214, 224, 386, 444
BspEI	TCCGGA	2 cut(s)	335, 371
BspFNI	CGCG	1 cut(s)	300
BspLI	GGNNCC	1 cut(s)	325
BspMI	ACCTGC	1 cut(s)	572
BspTNI	GGTCTC	1 cut(s)	362
BsrBI	CCGCTC	1 cut(s)	571
BsrDI	GCAATG	1 cut(s)	138
BssECI	CCNNGG	2 cut(s)	427, 483
BssNI	GRCGYC	2 cut(s)	552, 618
BstACI	GRCGYC	2 cut(s)	552, 618
BstBAI	YACGTR	1 cut(s)	543
BstC8I	GCNNGC	4 cut(s)	296, 512, 516, 569
BstF5I	GGATG	1 cut(s)	600
BstFNI	CGCG	1 cut(s)	300
BstHHI	GCGC	2 cut(s)	300, 455
BstMAI	GTCTC	1 cut(s)	362
BstMCI	CGRYCG	1 cut(s)	382
BstMWI	GCNNNNNNNGC	6 cut(s)	50, 295, 300, 450, 459, 573
BstSCI	CCNGG	6 cut(s)	343, 381, 402, 426, 582, 591
BstUI	CGCG	1 cut(s)	300
BstV1I	GCAGC	1 cut(s)	315
BstV2I	GAAGAC	2 cut(s)	603, 621
BsuRI	GGCC	4 cut(s)	214, 224, 386, 444
BtrI	CACGTC	1 cut(s)	526
BtsCI	GGATG	1 cut(s)	600
BtsI	GCAGTG	1 cut(s)	289
BtsIMutI	CAGTG	1 cut(s)	289
BveI	ACCTGC	1 cut(s)	572
Cac8I	GCNNGC	4 cut(s)	296, 512, 516, 569
CfoI	GCGC	2 cut(s)	300, 455
Cfr13I	GGNCC	4 cut(s)	213, 338, 384, 487
CseI	GACGC	3 cut(s)	523, 560, 626
Csp6I	GTAC	1 cut(s)	173
CviAII	CATG	2 cut(s)	220, 229
CviQI	GTAC	1 cut(s)	173
DrdI	GACNNNNNNGTC	1 cut(s)	386
DseDI	GACNNNNNNGTC	1 cut(s)	386
EaeI	YGGCCR	1 cut(s)	222
EciI	GGCGGA	1 cut(s)	482
Eco24I	GRGCYC	1 cut(s)	480
Eco31I	GGTCTC	1 cut(s)	362
Eco47I	GGWCC	2 cut(s)	338, 487
Eco72I	CACGTG	1 cut(s)	543
EcoO109I	RGGNCCY	1 cut(s)	487
EcoT38I	GRGCYC	1 cut(s)	480
FaeI	CATG	2 cut(s)	223, 232
FaiI	YATR	3 cut(s)	153, 221, 230
FalI	AAGNNNNNCTT	2 cut(s)	503, 535
FaqI	GGGAC	2 cut(s)	382, 444
FatI	CATG	2 cut(s)	219, 228
FauI	CCCGC	3 cut(s)	341, 346, 576
FblI	GTMKAC	2 cut(s)	537, 588
Fnu4HI	GCNGC	9 cut(s)	7, 45, 48, 51, 136, 164, 301, 304, 577
FokI	GGATG	1 cut(s)	587
FriOI	GRGCYC	1 cut(s)	480
Fsp4HI	GCNGC	9 cut(s)	7, 45, 48, 51, 136, 164, 301, 304, 577
GlaI	GCGC	2 cut(s)	299, 454
GluI	GCNGC	9 cut(s)	7, 45, 48, 51, 136, 164, 301, 304, 577
GsaI	CCCAGC	1 cut(s)	219
HaeIII	GGCC	4 cut(s)	214, 224, 386, 444
HgaI	GACGC	3 cut(s)	523, 560, 626
HhaI	GCGC	2 cut(s)	300, 455
Hin1I	GRCGYC	2 cut(s)	552, 618
Hin1II	CATG	2 cut(s)	223, 232
Hin6I	GCGC	2 cut(s)	298, 453
HinP1I	GCGC	2 cut(s)	298, 453
HincII	GTYRAC	2 cut(s)	538, 589
HindII	GTYRAC	2 cut(s)	538, 589
HinfI	GANTC	6 cut(s)	247, 332, 375, 395, 471, 624
HphI	GGTGA	3 cut(s)	64, 150, 457
Hpy166II	GTNNAC	3 cut(s)	184, 538, 589
Hpy188I	TCNGA	2 cut(s)	236, 320
Hpy188III	TCNNGA	4 cut(s)	244, 336, 372, 502
Hpy8I	GTNNAC	3 cut(s)	184, 538, 589
Hpy99I	CGWCG	6 cut(s)	314, 392, 395, 530, 539, 554
HpyAV	CCTTC	4 cut(s)	20, 64, 268, 529
HpyCH4IV	ACGT	4 cut(s)	149, 263, 525, 542
HpyCH4V	TGCA	3 cut(s)	294, 510, 631
HpyF10VI	GCNNNNNNNGC	6 cut(s)	50, 295, 300, 450, 459, 573
HpySE526I	ACGT	4 cut(s)	149, 263, 525, 542
Hsp92I	GRCGYC	2 cut(s)	552, 618
Hsp92II	CATG	2 cut(s)	223, 232
HspAI	GCGC	2 cut(s)	298, 453
Kpn2I	TCCGGA	2 cut(s)	335, 371
LmnI	GCTCC	1 cut(s)	429
Lsp1109I	GCAGC	1 cut(s)	315
MaeII	ACGT	4 cut(s)	149, 263, 525, 542
MbiI	CCGCTC	1 cut(s)	571
MboII	GAAGA	5 cut(s)	49, 56, 260, 608, 626
MhlI	GDGCHC	1 cut(s)	480
MlsI	TGGCCA	1 cut(s)	224
MluNI	TGGCCA	1 cut(s)	224
MlyI	GAGTC	3 cut(s)	241, 326, 404
MmeI	TCCRAC	1 cut(s)	214
Mox20I	TGGCCA	1 cut(s)	224
MroI	TCCGGA	2 cut(s)	335, 371
MscI	TGGCCA	1 cut(s)	224
MseI	TTAA	1 cut(s)	177
Msp20I	TGGCCA	1 cut(s)	224
MspR9I	CCNGG	6 cut(s)	345, 383, 404, 428, 584, 593
Mva1269I	GAATGC	1 cut(s)	455
MvnI	CGCG	1 cut(s)	300
MwoI	GCNNNNNNNGC	6 cut(s)	50, 295, 300, 450, 459, 573
NciI	CCSGG	6 cut(s)	345, 383, 404, 428, 584, 593
NlaIII	CATG	2 cut(s)	223, 232
NlaIV	GGNNCC	1 cut(s)	325
NmeAIII	GCCGAG	1 cut(s)	217
PaqCI	CACCTGC	1 cut(s)	572
PcsI	WCGNNNNNNNCGW	6 cut(s)	384, 453, 480, 522, 531, 534
PctI	GAATGC	1 cut(s)	455
PfeI	GAWTC	3 cut(s)	375, 471, 624
PkrI	GCNGC	9 cut(s)	8, 46, 49, 52, 137, 165, 302, 305, 578
PleI	GAGTC	3 cut(s)	241, 326, 403
PmaCI	CACGTG	1 cut(s)	543
PmlI	CACGTG	1 cut(s)	543
PpsI	GAGTC	3 cut(s)	241, 326, 403
Ppu21I	YACGTR	1 cut(s)	543
PpuMI	RGGWCCY	1 cut(s)	487
Psp5II	RGGWCCY	1 cut(s)	487
PspCI	CACGTG	1 cut(s)	543
PspFI	CCCAGC	1 cut(s)	215
PspN4I	GGNNCC	1 cut(s)	325
PspPI	GGNCC	4 cut(s)	213, 338, 384, 487
PspPPI	RGGWCCY	1 cut(s)	487
RsaI	GTAC	1 cut(s)	174
RsaNI	GTAC	1 cut(s)	173
SalI	GTCGAC	2 cut(s)	536, 587
SaqAI	TTAA	1 cut(s)	177
SatI	GCNGC	9 cut(s)	7, 45, 48, 51, 136, 164, 301, 304, 577
Sau96I	GGNCC	4 cut(s)	213, 338, 384, 487
SchI	GAGTC	3 cut(s)	241, 326, 404
ScrFI	CCNGG	6 cut(s)	345, 383, 404, 428, 584, 593
SduI	GDGCHC	1 cut(s)	480
SinI	GGWCC	2 cut(s)	338, 487
SmlI	CTYRAG	1 cut(s)	26
SmoI	CTYRAG	1 cut(s)	26
StyD4I	CCNGG	6 cut(s)	343, 381, 402, 426, 582, 591
TaiI	ACGT	4 cut(s)	152, 266, 528, 545
TaqI	TCGA	9 cut(s)	378, 393, 447, 474, 528, 537, 549, 588, 612
TatI	WGTACW	1 cut(s)	172
TauI	GCSGC	7 cut(s)	47, 50, 53, 138, 166, 303, 579
TfiI	GAWTC	3 cut(s)	375, 471, 624
Tru1I	TTAA	1 cut(s)	177
Tru9I	TTAA	1 cut(s)	177
TscAI	CASTG	1 cut(s)	296
TseI	GCWGC	2 cut(s)	6, 303
TspGWI	ACGGA	1 cut(s)	350
TspRI	CASTG	1 cut(s)	296
VpaK11BI	GGWCC	2 cut(s)	338, 487
XmiI	GTMKAC	2 cut(s)	537, 588

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.