Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009001.1

Orthogroup ID

OG0002352

Physical Location & Seq

Genomic Coordinates Forward (+)

87939 .. 88460

Gene Structure 522 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009001.1_g000015.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

atgtttcttctcctcctctacgccaagcactacaagcgcggcagcttcgtcgtcatcagaggaaccaccgactccggacctcccagcggggcgggtctctataaaaactccagaatcgacccggccgtcgtcgaggagtgcgtcgacacgtggctcgacgcccactccacctgcccgctctcctgctaccgggtcgacccggaagacatcctcctaattgaagacgccagaatcctgcactaccagaacagccagccccagactccccaccaaaacgacgttgtcatcaacatcgaaaccgacacaggaatccgccgcgtctcggggcgccactccttcgccttggaccagagacccgactcctcctctcactacaatacgtcgtcattccggaggtcccttgacagctggacctggttccagaaaaaaaaaaaccgaactcgcggctgccgtcggaagccaagaacgtccgagaaaagacggcctccttttaagccacgacaaaacaggtggcgacggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

173

Amino Acids

20.23

Weight (kDa)

10.07

Isoelectric Point (pI)

73.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002352)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G05810
fragaria_vesca	FvH4_4g06660
malus_domestica	MD13G1236900.v1.1 MD16G1242200.v1.1
prunus_persica	Prupe.1G069300_v2.0.a1
pyrus_communis	pycom13g20980 pycom16g20300
rosa_chinensis	RchiOBHm_Chr3g0495141 RchiOBHm_Chr4g0398561
rosa_laevigata	RLG00000009344 RLG00000026064 RLG00000029692 RLG00000030599 RLG00000032695 RLG00000032696
rosa_multiflora	Rmu_co8139468.1_g000001 Rmu_co8270033.1_g000001 Rmu_co8275827.1_g000001 Rmu_sc0000185.1_g000029 Rmu_sc0000990.1_g000016 Rmu_sc0005217.1_g000007 Rmu_sc0005996.1_g000027 Rmu_sc0009001.1_g000015 Rmu_sc0013727.1_g000001 Rmu_sc0016350.1_g000001
rosa_roxburghii	Rroxscaffold_5G00343530
rosa_rugosa	Rorug04G0009400
rosa_samantha	Rh1AG207300 Rh2AG231000 Rh2AG449700 Rh2CG436600 Rh2DG238800 Rh3DG271300 Rh4AG087300 Rh4BG083900 Rh4CG095500 Rh4DG078800 Rh4DG124400 Rh5DG085200 Rh6BG230400
rosa_wichuraiana	Rw1G018260 Rw1G018370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	179
AasI	GACNNNNNNGTC	1 cut(s)	125
Acc36I	ACCTGC	1 cut(s)	179
AccB1I	GGYRCC	1 cut(s)	327
AccBSI	CCGCTC	1 cut(s)	178
AccI	GTMKAC	2 cut(s)	144, 195
AccII	CGCG	3 cut(s)	39, 318, 444
AccIII	TCCGGA	2 cut(s)	74, 390
AciI	CCGC	7 cut(s)	39, 87, 92, 176, 313, 316, 444
AcoI	YGGCCR	1 cut(s)	123
AcvI	CACGTG	1 cut(s)	150
AcyI	GRCGYC	3 cut(s)	159, 225, 328
AfiI	CCNNNNNNNGG	3 cut(s)	86, 189, 322
AflIII	ACRYGT	1 cut(s)	147
AgsI	TTSAA	1 cut(s)	221
AjnI	CCWGG	1 cut(s)	413
AluBI	AGCT	2 cut(s)	45, 408
AluI	AGCT	2 cut(s)	45, 408
Alw26I	GTCTC	3 cut(s)	101, 325, 346
Ama87I	CYCGRG	1 cut(s)	322
Aor13HI	TCCGGA	2 cut(s)	74, 390
AoxI	GGCC	2 cut(s)	123, 482
ApeKI	GCWGC	2 cut(s)	42, 447
AspLEI	GCGC	2 cut(s)	39, 330
AspS9I	GGNCC	4 cut(s)	77, 346, 396, 411
AsuC2I	CCSGG	3 cut(s)	122, 191, 200
AvaI	CYCGRG	1 cut(s)	322
AvaII	GGWCC	4 cut(s)	77, 346, 396, 411
BanI	GGYRCC	1 cut(s)	327
BbrPI	CACGTG	1 cut(s)	150
BbsI	GAAGAC	2 cut(s)	210, 228
BbvI	GCAGC	2 cut(s)	54, 434
BceAI	ACGGC	3 cut(s)	110, 435, 497
BcgI	CGANNNNNNTGC	2 cut(s)	31, 65
BciT130I	CCWGG	1 cut(s)	415
BcnI	CCSGG	3 cut(s)	122, 191, 200
BcoDI	GTCTC	3 cut(s)	101, 325, 346
BfoI	RGCGCY	1 cut(s)	331
BfuAI	ACCTGC	1 cut(s)	179
BisI	GCNGC	5 cut(s)	40, 43, 316, 445, 448
BlsI	GCNGC	5 cut(s)	41, 44, 317, 446, 449
Bme1390I	CCNGG	4 cut(s)	122, 191, 200, 415
Bme18I	GGWCC	4 cut(s)	77, 346, 396, 411
BmeT110I	CYCGRG	1 cut(s)	322
BmgT120I	GGNCC	4 cut(s)	77, 346, 396, 411
BmiI	GGNNCC	4 cut(s)	64, 329, 398, 419
BmrFI	CCNGG	4 cut(s)	122, 191, 200, 415
BpiI	GAAGAC	2 cut(s)	210, 228
BpmI	CTGGAG	1 cut(s)	94
BpuMI	CCSGG	3 cut(s)	122, 191, 200
BsaAI	YACGTR	1 cut(s)	150
BsaHI	GRCGYC	3 cut(s)	159, 225, 328
BsaI	GGTCTC	2 cut(s)	101, 346
BsaJI	CCNNGG	1 cut(s)	342
BsaWI	WCCGGW	2 cut(s)	74, 390
BsaXI	ACNNNNNCTCC	2 cut(s)	149, 179
Bsc4I	CCNNNNNNNGG	3 cut(s)	86, 189, 322
BseAI	TCCGGA	2 cut(s)	74, 390
BseBI	CCWGG	1 cut(s)	415
BseDI	CCNNGG	1 cut(s)	342
BseGI	GGATG	1 cut(s)	207
BseLI	CCNNNNNNNGG	3 cut(s)	86, 189, 322
BseRI	GAGGAG	4 cut(s)	5, 149, 352, 355
BseX3I	CGGCCG	1 cut(s)	123
BseXI	GCAGC	2 cut(s)	54, 434
BseYI	CCCAGC	1 cut(s)	83
BsgI	GTGCAG	1 cut(s)	221
Bsh1236I	CGCG	3 cut(s)	39, 318, 444
Bsh1285I	CGRYCG	1 cut(s)	126
BshFI	GGCC	2 cut(s)	125, 484
BshNI	GGYRCC	1 cut(s)	327
BsiEI	CGRYCG	1 cut(s)	126
BsiHKCI	CYCGRG	1 cut(s)	322
BsiSI	CCGG	5 cut(s)	75, 122, 190, 200, 391
BslFI	GGGAC	1 cut(s)	382
BslI	CCNNNNNNNGG	3 cut(s)	86, 189, 322
BsmAI	GTCTC	3 cut(s)	101, 325, 346
BsmBI	CGTCTC	1 cut(s)	325
BsmFI	GGGAC	1 cut(s)	382
BsnI	GGCC	2 cut(s)	125, 484
Bso31I	GGTCTC	2 cut(s)	101, 346
BsoBI	CYCGRG	1 cut(s)	322
Bsp13I	TCCGGA	2 cut(s)	74, 390
BspACI	CCGC	7 cut(s)	39, 87, 92, 176, 313, 316, 444
BspANI	GGCC	2 cut(s)	125, 484
BspEI	TCCGGA	2 cut(s)	74, 390
BspFNI	CGCG	3 cut(s)	39, 318, 444
BspLI	GGNNCC	4 cut(s)	64, 329, 398, 419
BspMI	ACCTGC	1 cut(s)	179
BspT107I	GGYRCC	1 cut(s)	327
BspTNI	GGTCTC	2 cut(s)	101, 346
BsrBI	CCGCTC	1 cut(s)	178
BssECI	CCNNGG	1 cut(s)	342
BssNI	GRCGYC	3 cut(s)	159, 225, 328
BssT1I	CCWWGG	1 cut(s)	342
Bst2UI	CCWGG	1 cut(s)	415
Bst4CI	ACNGT	1 cut(s)	519
BstACI	GRCGYC	3 cut(s)	159, 225, 328
BstBAI	YACGTR	1 cut(s)	150
BstC8I	GCNNGC	2 cut(s)	176, 254
BstF5I	GGATG	1 cut(s)	207
BstFNI	CGCG	3 cut(s)	39, 318, 444
BstH2I	RGCGCY	1 cut(s)	331
BstHHI	GCGC	2 cut(s)	39, 330
BstMAI	GTCTC	3 cut(s)	101, 325, 346
BstMCI	CGRYCG	1 cut(s)	126
BstMWI	GCNNNNNNNGC	1 cut(s)	34
BstNI	CCWGG	1 cut(s)	415
BstSCI	CCNGG	4 cut(s)	120, 189, 198, 413
BstUI	CGCG	3 cut(s)	39, 318, 444
BstV1I	GCAGC	2 cut(s)	54, 434
BstV2I	GAAGAC	2 cut(s)	210, 228
BstZI	CGGCCG	1 cut(s)	123
BsuRI	GGCC	2 cut(s)	125, 484
BtsCI	GGATG	1 cut(s)	207
BveI	ACCTGC	1 cut(s)	179
Cac8I	GCNNGC	2 cut(s)	176, 254
CfoI	GCGC	2 cut(s)	39, 330
Cfr13I	GGNCC	4 cut(s)	77, 346, 396, 411
CseI	GACGC	4 cut(s)	130, 167, 233, 307
CsiI	ACCWGGT	1 cut(s)	413
CspCI	CAANNNNNGTGG	1 cut(s)	491
DinI	GGCGCC	1 cut(s)	329
DrdI	GACNNNNNNGTC	1 cut(s)	125
DseDI	GACNNNNNNGTC	1 cut(s)	125
EaeI	YGGCCR	1 cut(s)	123
EagI	CGGCCG	1 cut(s)	123
EciI	GGCGGA	1 cut(s)	302
EclXI	CGGCCG	1 cut(s)	123
Eco130I	CCWWGG	1 cut(s)	342
Eco31I	GGTCTC	2 cut(s)	101, 346
Eco47I	GGWCC	4 cut(s)	77, 346, 396, 411
Eco52I	CGGCCG	1 cut(s)	123
Eco72I	CACGTG	1 cut(s)	150
Eco88I	CYCGRG	1 cut(s)	322
EcoO109I	RGGNCCY	1 cut(s)	396
EcoRII	CCWGG	1 cut(s)	413
EcoT14I	CCWWGG	1 cut(s)	342
EgeI	GGCGCC	1 cut(s)	329
EheI	GGCGCC	1 cut(s)	329
ErhI	CCWWGG	1 cut(s)	342
Esp3I	CGTCTC	1 cut(s)	325
FaiI	YATR	1 cut(s)	102
FaqI	GGGAC	1 cut(s)	382
FauI	CCCGC	3 cut(s)	80, 85, 183
FblI	GTMKAC	2 cut(s)	144, 195
Fnu4HI	GCNGC	5 cut(s)	40, 43, 316, 445, 448
FokI	GGATG	1 cut(s)	194
Fsp4HI	GCNGC	5 cut(s)	40, 43, 316, 445, 448
GlaI	GCGC	2 cut(s)	38, 329
GluI	GCNGC	5 cut(s)	40, 43, 316, 445, 448
GsaI	CCCAGC	1 cut(s)	87
GsuI	CTGGAG	1 cut(s)	94
HaeII	RGCGCY	1 cut(s)	331
HaeIII	GGCC	2 cut(s)	125, 484
HapII	CCGG	5 cut(s)	75, 122, 190, 200, 391
HgaI	GACGC	4 cut(s)	130, 167, 233, 307
HhaI	GCGC	2 cut(s)	39, 330
Hin1I	GRCGYC	3 cut(s)	159, 225, 328
Hin6I	GCGC	2 cut(s)	37, 328
HinP1I	GCGC	2 cut(s)	37, 328
HincII	GTYRAC	2 cut(s)	145, 196
HindII	GTYRAC	2 cut(s)	145, 196
HinfI	GANTC	6 cut(s)	71, 114, 231, 262, 309, 359
HpaII	CCGG	5 cut(s)	75, 122, 190, 200, 391
Hpy166II	GTNNAC	2 cut(s)	145, 196
Hpy188I	TCNGA	3 cut(s)	59, 456, 472
Hpy188III	TCNNGA	4 cut(s)	75, 111, 391, 421
Hpy8I	GTNNAC	2 cut(s)	145, 196
Hpy99I	CGWCG	9 cut(s)	53, 131, 134, 146, 161, 281, 385, 456, 519
HpyAV	CCTTC	1 cut(s)	346
HpyCH4III	ACNGT	1 cut(s)	519
HpyCH4IV	ACGT	4 cut(s)	149, 279, 380, 467
HpyCH4V	TGCA	1 cut(s)	238
HpyF10VI	GCNNNNNNNGC	1 cut(s)	34
HpySE526I	ACGT	4 cut(s)	149, 279, 380, 467
Hsp92I	GRCGYC	3 cut(s)	159, 225, 328
HspAI	GCGC	2 cut(s)	37, 328
KasI	GGCGCC	1 cut(s)	327
Kpn2I	TCCGGA	2 cut(s)	74, 390
Lsp1109I	GCAGC	2 cut(s)	54, 434
MabI	ACCWGGT	1 cut(s)	413
MaeII	ACGT	4 cut(s)	149, 279, 380, 467
MbiI	CCGCTC	1 cut(s)	178
MboII	GAAGA	2 cut(s)	215, 233
MluCI	AATT	1 cut(s)	216
Mly113I	GGCGCC	1 cut(s)	328
MlyI	GAGTC	3 cut(s)	65, 256, 353
MmeI	TCCRAC	1 cut(s)	434
MroI	TCCGGA	2 cut(s)	74, 390
MseI	TTAA	1 cut(s)	492
MspA1I	CMGCKG	2 cut(s)	87, 408
MspI	CCGG	5 cut(s)	75, 122, 190, 200, 391
MspR9I	CCNGG	4 cut(s)	122, 191, 200, 415
MvaI	CCWGG	1 cut(s)	415
MvnI	CGCG	3 cut(s)	39, 318, 444
MwoI	GCNNNNNNNGC	1 cut(s)	34
NarI	GGCGCC	1 cut(s)	328
NciI	CCSGG	3 cut(s)	122, 191, 200
NlaIV	GGNNCC	4 cut(s)	64, 329, 398, 419
PaqCI	CACCTGC	1 cut(s)	179
PcsI	WCGNNNNNNNCGW	3 cut(s)	123, 138, 448
PfeI	GAWTC	3 cut(s)	114, 231, 309
PflFI	GACNNNGTC	1 cut(s)	281
PkrI	GCNGC	5 cut(s)	41, 44, 317, 446, 449
PleI	GAGTC	3 cut(s)	65, 256, 353
PluTI	GGCGCC	1 cut(s)	331
PmaCI	CACGTG	1 cut(s)	150
PmlI	CACGTG	1 cut(s)	150
PpsI	GAGTC	3 cut(s)	65, 256, 353
Ppu21I	YACGTR	1 cut(s)	150
PpuMI	RGGWCCY	1 cut(s)	396
Psp5II	RGGWCCY	1 cut(s)	396
Psp6I	CCWGG	1 cut(s)	413
PspCI	CACGTG	1 cut(s)	150
PspFI	CCCAGC	1 cut(s)	83
PspGI	CCWGG	1 cut(s)	413
PspN4I	GGNNCC	4 cut(s)	64, 329, 398, 419
PspPI	GGNCC	4 cut(s)	77, 346, 396, 411
PspPPI	RGGWCCY	1 cut(s)	396
PsyI	GACNNNGTC	1 cut(s)	281
PvuII	CAGCTG	1 cut(s)	408
SalI	GTCGAC	2 cut(s)	143, 194
SaqAI	TTAA	1 cut(s)	492
SatI	GCNGC	5 cut(s)	40, 43, 316, 445, 448
Sau96I	GGNCC	4 cut(s)	77, 346, 396, 411
SchI	GAGTC	3 cut(s)	65, 256, 353
ScrFI	CCNGG	4 cut(s)	122, 191, 200, 415
SexAI	ACCWGGT	1 cut(s)	413
SfoI	GGCGCC	1 cut(s)	329
SinI	GGWCC	4 cut(s)	77, 346, 396, 411
Sse9I	AATT	1 cut(s)	216
SsiI	CCGC	7 cut(s)	39, 87, 92, 176, 313, 316, 444
SspDI	GGCGCC	1 cut(s)	327
StyD4I	CCNGG	4 cut(s)	120, 189, 198, 413
StyI	CCWWGG	1 cut(s)	342
TaaI	ACNGT	1 cut(s)	519
TaiI	ACGT	4 cut(s)	152, 282, 383, 470
TaqI	TCGA	6 cut(s)	117, 132, 144, 156, 195, 294
TasI	AATT	1 cut(s)	216
TauI	GCSGC	3 cut(s)	42, 318, 447
TfiI	GAWTC	3 cut(s)	114, 231, 309
Tru1I	TTAA	1 cut(s)	492
Tru9I	TTAA	1 cut(s)	492
TseI	GCWGC	2 cut(s)	42, 447
Tth111I	GACNNNGTC	1 cut(s)	281
VpaK11BI	GGWCC	4 cut(s)	77, 346, 396, 411
XmiI	GTMKAC	2 cut(s)	144, 195

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.