Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8270033.1

Orthogroup ID

OG0002352

Physical Location & Seq

Genomic Coordinates Reverse (-)

17 .. 811

Gene Structure 795 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8270033.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 795 bp

ctgcaccaccagaacagccagccccagactccccaccaaaacgacgtcgtcatcaacgtcgaagccgacccgggaatccgccgcgtgtcggggcgccactcctccgccttggagcagcgacccggctcctcctctcacgacaatacgtcgtcgttccggaggtccctcgacagctggacctggttccggaaaaaaaccgaacccgccgccgccgccgccggaagccaagaacgtccgagaaaagacggccttcttttaagccacgacaaaacgaggctggagcaccgaatcatcgtctcctccccgagatcaagcaacaccggcggcggtggtgggttccaccaacgatggagcgacgtacagccgtccgatcttctctaccttcgctccgagatgatcataagcgataacggactgacacgtcaggggcaggaggaaccgttgcggtgtggcaatggggccgttccagctggggacattaatggaggcagagacagtggcagtggcagaggcgtaataaacgagcgaagcgtgtcggaaatcacggggttgagcaggttttcgaacagagggagcagtaatgagaggagcaatcagcaccaccaacaccaaaaccaaaaccatcagcagcgttaccaacagcgacagctcaggctcgtatccaggtgggtcgcttggatttcgtcccagtcacgcccagctgcacggtctgatcgtactactggtgctgcttcccccaccactccacagcctgcaccaccaccaccgcctttacccactgtggccactgcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

264

Amino Acids

29.02

Weight (kDa)

10.99

Isoelectric Point (pI)

66.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002352)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G05810
fragaria_vesca	FvH4_4g06660
malus_domestica	MD13G1236900.v1.1 MD16G1242200.v1.1
prunus_persica	Prupe.1G069300_v2.0.a1
pyrus_communis	pycom13g20980 pycom16g20300
rosa_chinensis	RchiOBHm_Chr3g0495141 RchiOBHm_Chr4g0398561
rosa_laevigata	RLG00000009344 RLG00000026064 RLG00000029692 RLG00000030599 RLG00000032695 RLG00000032696
rosa_multiflora	Rmu_co8139468.1_g000001 Rmu_co8270033.1_g000001 Rmu_co8275827.1_g000001 Rmu_sc0000185.1_g000029 Rmu_sc0000990.1_g000016 Rmu_sc0005217.1_g000007 Rmu_sc0005996.1_g000027 Rmu_sc0009001.1_g000015 Rmu_sc0013727.1_g000001 Rmu_sc0016350.1_g000001
rosa_roxburghii	Rroxscaffold_5G00343530
rosa_rugosa	Rorug04G0009400
rosa_samantha	Rh1AG207300 Rh2AG231000 Rh2AG449700 Rh2CG436600 Rh2DG238800 Rh3DG271300 Rh4AG087300 Rh4BG083900 Rh4CG095500 Rh4DG078800 Rh4DG124400 Rh5DG085200 Rh6BG230400
rosa_wichuraiana	Rw1G018260 Rw1G018370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	420
AatII	GACGTC	1 cut(s)	48
Acc36I	ACCTGC	1 cut(s)	546
AccB1I	GGYRCC	1 cut(s)	93
AccII	CGCG	1 cut(s)	84
AccIII	TCCGGA	2 cut(s)	156, 186
AcoI	YGGCCR	1 cut(s)	783
AcyI	GRCGYC	2 cut(s)	45, 94
AfaI	GTAC	2 cut(s)	360, 718
AfiI	CCNNNNNNNGG	2 cut(s)	88, 186
AflIII	ACRYGT	1 cut(s)	419
AhdI	GACNNNNNGTC	1 cut(s)	145
AjiI	CACGTC	1 cut(s)	422
AjnI	CCWGG	2 cut(s)	179, 662
AluBI	AGCT	4 cut(s)	174, 470, 649, 701
AluI	AGCT	4 cut(s)	174, 470, 649, 701
Alw21I	GWGCWC	1 cut(s)	285
Alw26I	GTCTC	2 cut(s)	301, 486
Ama87I	CYCGRG	2 cut(s)	70, 304
Aor13HI	TCCGGA	2 cut(s)	156, 186
AoxI	GGCC	3 cut(s)	247, 459, 783
ApeKI	GCWGC	4 cut(s)	115, 628, 701, 728
AseI	ATTAAT	1 cut(s)	480
AspLEI	GCGC	1 cut(s)	96
AspS9I	GGNCC	3 cut(s)	162, 177, 459
AsuC2I	CCSGG	3 cut(s)	71, 72, 123
AsuII	TTCGAA	1 cut(s)	563
AvaI	CYCGRG	2 cut(s)	70, 304
AvaII	GGWCC	2 cut(s)	162, 177
BalI	TGGCCA	1 cut(s)	785
BanI	GGYRCC	1 cut(s)	93
Bbv12I	GWGCWC	1 cut(s)	285
BbvI	GCAGC	4 cut(s)	127, 640, 688, 715
BccI	CCATC	2 cut(s)	342, 630
BceAI	ACGGC	3 cut(s)	262, 349, 446
BciT130I	CCWGG	2 cut(s)	181, 664
BciVI	GTATCC	1 cut(s)	670
BclI	TGATCA	1 cut(s)	396
BcnI	CCSGG	3 cut(s)	71, 72, 123
BcoDI	GTCTC	2 cut(s)	301, 486
BfoI	RGCGCY	1 cut(s)	97
BfuAI	ACCTGC	1 cut(s)	546
BfuI	GTATCC	1 cut(s)	670
Bme1390I	CCNGG	5 cut(s)	71, 72, 123, 181, 664
Bme18I	GGWCC	2 cut(s)	162, 177
BmeRI	GACNNNNNGTC	1 cut(s)	145
BmeT110I	CYCGRG	2 cut(s)	70, 304
BmgBI	CACGTC	1 cut(s)	422
BmgT120I	GGNCC	3 cut(s)	162, 177, 459
BmiI	GGNNCC	7 cut(s)	95, 127, 164, 185, 338, 438, 460
BmrFI	CCNGG	5 cut(s)	71, 72, 123, 181, 664
BmrI	ACTGGG	1 cut(s)	682
BmuI	ACTGGG	1 cut(s)	682
BpmI	CTGGAG	1 cut(s)	299
Bpu10I	CCTNAGC	1 cut(s)	650
Bpu14I	TTCGAA	1 cut(s)	563
BpuMI	CCSGG	3 cut(s)	71, 72, 123
BsaHI	GRCGYC	2 cut(s)	45, 94
BsaJI	CCNNGG	2 cut(s)	70, 108
BsaWI	WCCGGW	2 cut(s)	156, 186
BsaXI	ACNNNNNCTCC	4 cut(s)	371, 401, 425, 455
Bsc4I	CCNNNNNNNGG	2 cut(s)	88, 186
Bse118I	RCCGGY	1 cut(s)	320
Bse1I	ACTGG	2 cut(s)	688, 727
Bse3DI	GCAATG	1 cut(s)	460
BseAI	TCCGGA	2 cut(s)	156, 186
BseBI	CCWGG	2 cut(s)	181, 664
BseDI	CCNNGG	2 cut(s)	70, 108
BseLI	CCNNNNNNNGG	2 cut(s)	88, 186
BseMI	GCAATG	1 cut(s)	460
BseMII	CTCAG	1 cut(s)	664
BseNI	ACTGG	2 cut(s)	688, 727
BseRI	GAGGAG	5 cut(s)	91, 118, 121, 289, 601
BseXI	GCAGC	4 cut(s)	127, 640, 688, 715
BseYI	CCCAGC	2 cut(s)	470, 697
BsgI	GTGCAG	2 cut(s)	687, 738
Bsh1236I	CGCG	1 cut(s)	84
BshFI	GGCC	3 cut(s)	249, 461, 785
BshNI	GGYRCC	1 cut(s)	93
BsiHKAI	GWGCWC	1 cut(s)	285
BsiHKCI	CYCGRG	2 cut(s)	70, 304
BsiSI	CCGG	6 cut(s)	71, 123, 157, 187, 219, 321
BslFI	GGGAC	3 cut(s)	148, 488, 670
BslI	CCNNNNNNNGG	2 cut(s)	88, 186
BsmAI	GTCTC	2 cut(s)	301, 486
BsmBI	CGTCTC	1 cut(s)	301
BsmFI	GGGAC	3 cut(s)	148, 488, 670
BsnI	GGCC	3 cut(s)	249, 461, 785
BsoBI	CYCGRG	2 cut(s)	70, 304
Bsp119I	TTCGAA	1 cut(s)	563
Bsp1286I	GDGCHC	1 cut(s)	285
Bsp13I	TCCGGA	2 cut(s)	156, 186
Bsp143I	GATC	4 cut(s)	308, 370, 396, 712
BspANI	GGCC	3 cut(s)	249, 461, 785
BspCNI	CTCAG	1 cut(s)	663
BspEI	TCCGGA	2 cut(s)	156, 186
BspFNI	CGCG	1 cut(s)	84
BspLI	GGNNCC	7 cut(s)	95, 127, 164, 185, 338, 438, 460
BspMI	ACCTGC	1 cut(s)	546
BspT104I	TTCGAA	1 cut(s)	563
BspT107I	GGYRCC	1 cut(s)	93
BsrDI	GCAATG	1 cut(s)	460
BsrFI	RCCGGY	1 cut(s)	320
BsrI	ACTGG	2 cut(s)	688, 727
BssAI	RCCGGY	1 cut(s)	320
BssECI	CCNNGG	2 cut(s)	70, 108
BssMI	GATC	4 cut(s)	308, 370, 396, 712
BssNI	GRCGYC	2 cut(s)	45, 94
BssT1I	CCWWGG	1 cut(s)	108
Bst2UI	CCWGG	2 cut(s)	181, 664
Bst4CI	ACNGT	4 cut(s)	441, 497, 708, 781
BstACI	GRCGYC	2 cut(s)	45, 94
BstBI	TTCGAA	1 cut(s)	563
BstC8I	GCNNGC	2 cut(s)	20, 753
BstDEI	CTNAG	1 cut(s)	650
BstFNI	CGCG	1 cut(s)	84
BstH2I	RGCGCY	1 cut(s)	97
BstHHI	GCGC	1 cut(s)	96
BstKTI	GATC	4 cut(s)	311, 373, 399, 715
BstMAI	GTCTC	2 cut(s)	301, 486
BstMBI	GATC	4 cut(s)	308, 370, 396, 712
BstMWI	GCNNNNNNNGC	4 cut(s)	212, 215, 321, 467
BstNI	CCWGG	2 cut(s)	181, 664
BstSCI	CCNGG	5 cut(s)	69, 70, 121, 179, 662
BstUI	CGCG	1 cut(s)	84
BstV1I	GCAGC	4 cut(s)	127, 640, 688, 715
BsuI	GTATCC	1 cut(s)	670
BsuRI	GGCC	3 cut(s)	249, 461, 785
BtrI	CACGTC	1 cut(s)	422
BtsI	GCAGTG	2 cut(s)	508, 786
BtsIMutI	CAGTG	4 cut(s)	502, 508, 777, 786
BveI	ACCTGC	1 cut(s)	546
Cac8I	GCNNGC	2 cut(s)	20, 753
CfoI	GCGC	1 cut(s)	96
Cfr10I	RCCGGY	1 cut(s)	320
Cfr13I	GGNCC	3 cut(s)	162, 177, 459
Cfr9I	CCCGGG	1 cut(s)	70
CsiI	ACCWGGT	1 cut(s)	179
Csp6I	GTAC	2 cut(s)	359, 717
CviQI	GTAC	2 cut(s)	359, 717
DdeI	CTNAG	1 cut(s)	650
DinI	GGCGCC	1 cut(s)	95
DpnI	GATC	4 cut(s)	310, 372, 398, 714
DpnII	GATC	4 cut(s)	308, 370, 396, 712
DrdI	GACNNNNNNGTC	1 cut(s)	420
DriI	GACNNNNNGTC	1 cut(s)	145
DseDI	GACNNNNNNGTC	1 cut(s)	420
EaeI	YGGCCR	1 cut(s)	783
Eam1105I	GACNNNNNGTC	1 cut(s)	145
EciI	GGCGGA	2 cut(s)	68, 94
Eco130I	CCWWGG	1 cut(s)	108
Eco47I	GGWCC	2 cut(s)	162, 177
Eco88I	CYCGRG	2 cut(s)	70, 304
EcoO109I	RGGNCCY	1 cut(s)	162
EcoRII	CCWGG	2 cut(s)	179, 662
EcoT14I	CCWWGG	1 cut(s)	108
EgeI	GGCGCC	1 cut(s)	95
EheI	GGCGCC	1 cut(s)	95
ErhI	CCWWGG	1 cut(s)	108
Esp3I	CGTCTC	1 cut(s)	301
FaiI	YATR	1 cut(s)	401
FalI	AAGNNNNNCTT	2 cut(s)	234, 266
FaqI	GGGAC	3 cut(s)	148, 488, 670
FauI	CCCGC	1 cut(s)	211
FbaI	TGATCA	1 cut(s)	396
GlaI	GCGC	1 cut(s)	95
GsaI	CCCAGC	2 cut(s)	474, 701
GsuI	CTGGAG	1 cut(s)	299
HaeII	RGCGCY	1 cut(s)	97
HaeIII	GGCC	3 cut(s)	249, 461, 785
HapII	CCGG	6 cut(s)	71, 123, 157, 187, 219, 321
HhaI	GCGC	1 cut(s)	96
Hin1I	GRCGYC	2 cut(s)	45, 94
Hin6I	GCGC	1 cut(s)	94
HinP1I	GCGC	1 cut(s)	94
HinfI	GANTC	3 cut(s)	28, 75, 288
HpaII	CCGG	6 cut(s)	71, 123, 157, 187, 219, 321
Hpy188I	TCNGA	5 cut(s)	237, 370, 391, 538, 712
Hpy188III	TCNNGA	3 cut(s)	137, 157, 187
Hpy99I	CGWCG	6 cut(s)	47, 50, 62, 151, 154, 359
HpyAV	CCTTC	2 cut(s)	260, 392
HpyCH4III	ACNGT	4 cut(s)	441, 497, 708, 781
HpyCH4IV	ACGT	6 cut(s)	45, 57, 146, 232, 357, 421
HpyCH4V	TGCA	3 cut(s)	4, 704, 755
HpyF10VI	GCNNNNNNNGC	4 cut(s)	212, 215, 321, 467
HpyF3I	CTNAG	1 cut(s)	650
HpySE526I	ACGT	6 cut(s)	45, 57, 146, 232, 357, 421
Hsp92I	GRCGYC	2 cut(s)	45, 94
HspAI	GCGC	1 cut(s)	94
KasI	GGCGCC	1 cut(s)	93
Kpn2I	TCCGGA	2 cut(s)	156, 186
Ksp22I	TGATCA	1 cut(s)	396
Kzo9I	GATC	4 cut(s)	308, 370, 396, 712
LmnI	GCTCC	7 cut(s)	112, 131, 280, 351, 392, 573, 588
Lsp1109I	GCAGC	4 cut(s)	127, 640, 688, 715
MabI	ACCWGGT	1 cut(s)	179
MaeII	ACGT	6 cut(s)	45, 57, 146, 232, 357, 421
MaeIII	GTNAC	2 cut(s)	632, 690
MalI	GATC	4 cut(s)	310, 372, 398, 714
MboI	GATC	4 cut(s)	308, 370, 396, 712
MboII	GAAGA	1 cut(s)	365
MhlI	GDGCHC	1 cut(s)	285
MlsI	TGGCCA	1 cut(s)	785
MluNI	TGGCCA	1 cut(s)	785
Mly113I	GGCGCC	1 cut(s)	94
MlyI	GAGTC	1 cut(s)	22
MmeI	TCCRAC	1 cut(s)	516
Mox20I	TGGCCA	1 cut(s)	785
MroI	TCCGGA	2 cut(s)	156, 186
MscI	TGGCCA	1 cut(s)	785
MseI	TTAA	2 cut(s)	257, 480
Msp20I	TGGCCA	1 cut(s)	785
MspA1I	CMGCKG	3 cut(s)	174, 470, 701
MspI	CCGG	6 cut(s)	71, 123, 157, 187, 219, 321
MspR9I	CCNGG	5 cut(s)	71, 72, 123, 181, 664
MvaI	CCWGG	2 cut(s)	181, 664
MvnI	CGCG	1 cut(s)	84
MwoI	GCNNNNNNNGC	4 cut(s)	212, 215, 321, 467
NarI	GGCGCC	1 cut(s)	94
NciI	CCSGG	3 cut(s)	71, 72, 123
NdeII	GATC	4 cut(s)	308, 370, 396, 712
NlaIV	GGNNCC	7 cut(s)	95, 127, 164, 185, 338, 438, 460
NmuCI	GTSAC	1 cut(s)	690
NspV	TTCGAA	1 cut(s)	563
PcsI	WCGNNNNNNNCGW	4 cut(s)	54, 63, 528, 712
PfeI	GAWTC	2 cut(s)	75, 288
PflFI	GACNNNGTC	1 cut(s)	47
PleI	GAGTC	1 cut(s)	22
PluTI	GGCGCC	1 cut(s)	97
PpsI	GAGTC	1 cut(s)	22
PpuMI	RGGWCCY	1 cut(s)	162
PshBI	ATTAAT	1 cut(s)	480
Psp5II	RGGWCCY	1 cut(s)	162
Psp6I	CCWGG	2 cut(s)	179, 662
PspFI	CCCAGC	2 cut(s)	470, 697
PspGI	CCWGG	2 cut(s)	179, 662
PspN4I	GGNNCC	7 cut(s)	95, 127, 164, 185, 338, 438, 460
PspPI	GGNCC	3 cut(s)	162, 177, 459
PspPPI	RGGWCCY	1 cut(s)	162
PsyI	GACNNNGTC	1 cut(s)	47
PvuII	CAGCTG	3 cut(s)	174, 470, 701
RsaI	GTAC	2 cut(s)	360, 718
RsaNI	GTAC	2 cut(s)	359, 717
SaqAI	TTAA	2 cut(s)	257, 480
Sau3AI	GATC	4 cut(s)	308, 370, 396, 712
Sau96I	GGNCC	3 cut(s)	162, 177, 459
SchI	GAGTC	1 cut(s)	22
ScrFI	CCNGG	5 cut(s)	71, 72, 123, 181, 664
SduI	GDGCHC	1 cut(s)	285
SexAI	ACCWGGT	1 cut(s)	179
SfoI	GGCGCC	1 cut(s)	95
SfuI	TTCGAA	1 cut(s)	563
SgrAI	CRCCGGYG	1 cut(s)	320
SinI	GGWCC	2 cut(s)	162, 177
SmaI	CCCGGG	1 cut(s)	72
SspDI	GGCGCC	1 cut(s)	93
StyD4I	CCNGG	5 cut(s)	69, 70, 121, 179, 662
StyI	CCWWGG	1 cut(s)	108
TaaI	ACNGT	4 cut(s)	441, 497, 708, 781
TaiI	ACGT	6 cut(s)	48, 60, 149, 235, 360, 424
TaqI	TCGA	3 cut(s)	60, 168, 563
TauI	GCSGC	6 cut(s)	84, 209, 212, 215, 218, 327
TfiI	GAWTC	2 cut(s)	75, 288
Tru1I	TTAA	2 cut(s)	257, 480
Tru9I	TTAA	2 cut(s)	257, 480
TscAI	CASTG	4 cut(s)	502, 508, 784, 793
TseFI	GTSAC	1 cut(s)	690
TseI	GCWGC	4 cut(s)	115, 628, 701, 728
Tsp45I	GTSAC	1 cut(s)	690
TspGWI	ACGGA	1 cut(s)	426
TspMI	CCCGGG	1 cut(s)	70
TspRI	CASTG	4 cut(s)	502, 508, 784, 793
Tth111I	GACNNNGTC	1 cut(s)	47
VpaK11BI	GGWCC	2 cut(s)	162, 177
VspI	ATTAAT	1 cut(s)	480
XmaI	CCCGGG	1 cut(s)	70
ZraI	GACGTC	1 cut(s)	46

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.