Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0002352

Physical Location & Seq

Genomic Coordinates Reverse (-)

64283437 .. 64284470

Gene Structure 1034 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000030599

Sequence Viewer

CDS Protein Promoter (2k)

Length: 696 bp

ATGGTAATTTTTCATTACCATCTAGGTACTAGAACCAGAGCAGACATTGCTACAACGTCTGCTTCACTGCCACCACCTGTTAATGTGGACACTGCCGAGAAACCCAAGTCCTTCCGGCCCAGCATGGCCATAATGGTCGGAGTTCTGACAACTCTGTTCTCCTTTACGTTTCTTCTCCTCCTTTACGCCAAGCACTGCAAGCGTGGCAACTTCATCTTCATCGGAGGAACCGCCGACTCCAGACCTCCCGGCGGGGCGGGTCTTCCCGTCGTCGAGTCCTTCCCGGTTTTCCGGTTTAGGTCACGCTGGGGACACAAGGATGGCCTCGAATGCGTCGTCTGCCTCACCCGATTCGAGCCCACCGAGGTCCTCTGCCTCCTCCCGAAATGCAAGCACGCCTTCCACGTGGAGTGCGTCGACAAGTGGCTCAACGCCCACTCCACCTGCCCGCTCTGCCGCTACTGGGTCGACCCGGAAGACATCCTCCTAATCGAAGACGCTAGAATCCTGCACCACAAGAACAGCCAGCCCCAGACTCCTCACCAACGTTGTGGAGGAGTGGCGCCCCGAGACGCGGCGGATTCCCGGGTTGGTTTTGATATTGATGACGACGTCGTTTTGGTGGCTCAACGAGCGACGTTGGTGCTAGAATCCTACACCACCAGCGGGATGTGGATGAAGATGAACCTAGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

232

Amino Acids

25.84

Weight (kDa)

8.09

Isoelectric Point (pI)

50.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	110 - 153	1.5e-13	Ring finger domain
zf-RING_11	PF17123	110 - 139	4.8e-08	RING-like zinc finger
zf-C3HC4_2	PF13923	110 - 152	6.1e-07	Zinc finger, C3HC4 type (RING finger)
zf-rbx1	PF12678	121 - 153	6.4e-09	RING-H2 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002352)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G05810
fragaria_vesca	FvH4_4g06660
malus_domestica	MD13G1236900.v1.1 MD16G1242200.v1.1
prunus_persica	Prupe.1G069300_v2.0.a1
pyrus_communis	pycom13g20980 pycom16g20300
rosa_chinensis	RchiOBHm_Chr3g0495141 RchiOBHm_Chr4g0398561
rosa_laevigata	RLG00000009344 RLG00000026064 RLG00000029692 RLG00000030599 RLG00000032695 RLG00000032696
rosa_multiflora	Rmu_co8139468.1_g000001 Rmu_co8270033.1_g000001 Rmu_co8275827.1_g000001 Rmu_sc0000185.1_g000029 Rmu_sc0000990.1_g000016 Rmu_sc0005217.1_g000007 Rmu_sc0005996.1_g000027 Rmu_sc0009001.1_g000015 Rmu_sc0013727.1_g000001 Rmu_sc0016350.1_g000001
rosa_roxburghii	Rroxscaffold_5G00343530
rosa_rugosa	Rorug04G0009400
rosa_samantha	Rh1AG207300 Rh2AG231000 Rh2AG449700 Rh2CG436600 Rh2DG238800 Rh3DG271300 Rh4AG087300 Rh4BG083900 Rh4CG095500 Rh4DG078800 Rh4DG124400 Rh5DG085200 Rh6BG230400
rosa_wichuraiana	Rw1G018260 Rw1G018370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	452
AatII	GACGTC	1 cut(s)	615
Acc36I	ACCTGC	1 cut(s)	452
AccB1I	GGYRCC	1 cut(s)	562
AccBSI	CCGCTC	1 cut(s)	451
AccI	GTMKAC	2 cut(s)	417, 468
AccII	CGCG	1 cut(s)	575
AciI	CCGC	8 cut(s)	231, 252, 257, 449, 457, 575, 578, 666
AclI	AACGTT	1 cut(s)	547
AcoI	YGGCCR	1 cut(s)	126
AcvI	CACGTG	1 cut(s)	406
AcyI	GRCGYC	2 cut(s)	563, 612
AfaI	GTAC	1 cut(s)	28
AfiI	CCNNNNNNNGG	4 cut(s)	251, 463, 574, 666
Alw26I	GTCTC	1 cut(s)	564
Ama87I	CYCGRG	2 cut(s)	567, 585
AoxI	GGCC	3 cut(s)	116, 126, 322
ArsI	GACNNNNNNTTYG	2 cut(s)	321, 353
AspLEI	GCGC	1 cut(s)	565
AspS9I	GGNCC	2 cut(s)	117, 367
AsuC2I	CCSGG	5 cut(s)	249, 284, 473, 586, 587
AsuHPI	GGTGA	2 cut(s)	337, 533
AvaI	CYCGRG	2 cut(s)	567, 585
AvaII	GGWCC	1 cut(s)	367
BalI	TGGCCA	1 cut(s)	128
BanI	GGYRCC	1 cut(s)	562
BanII	GRGCYC	1 cut(s)	360
BbrPI	CACGTG	1 cut(s)	406
BbsI	GAAGAC	3 cut(s)	254, 483, 501
BccI	CCATC	2 cut(s)	27, 314
BcgI	CGANNNNNNTGC	2 cut(s)	625, 659
BcnI	CCSGG	5 cut(s)	249, 284, 473, 586, 587
BcoDI	GTCTC	1 cut(s)	564
BfaI	CTAG	5 cut(s)	23, 30, 501, 647, 689
BfoI	RGCGCY	1 cut(s)	566
BfuAI	ACCTGC	1 cut(s)	452
BisI	GCNGC	2 cut(s)	457, 576
BlsI	GCNGC	2 cut(s)	458, 577
Bme1390I	CCNGG	5 cut(s)	249, 284, 473, 586, 587
Bme18I	GGWCC	1 cut(s)	367
BmeT110I	CYCGRG	2 cut(s)	567, 585
BmgT120I	GGNCC	2 cut(s)	117, 367
BmiI	GGNNCC	2 cut(s)	229, 564
BmrFI	CCNGG	5 cut(s)	249, 284, 473, 586, 587
BmrI	ACTGGG	1 cut(s)	472
BmuI	ACTGGG	1 cut(s)	472
BpiI	GAAGAC	3 cut(s)	254, 483, 501
BpmI	CTGGAG	1 cut(s)	223
BpuMI	CCSGG	5 cut(s)	249, 284, 473, 586, 587
BsaAI	YACGTR	1 cut(s)	406
BsaHI	GRCGYC	2 cut(s)	563, 612
BsaJI	CCNNGG	2 cut(s)	363, 585
BsaWI	WCCGGW	1 cut(s)	291
BsaXI	ACNNNNNCTCC	2 cut(s)	422, 452
Bsc4I	CCNNNNNNNGG	4 cut(s)	251, 463, 574, 666
Bse1I	ACTGG	1 cut(s)	467
Bse3DI	GCAATG	1 cut(s)	45
BseDI	CCNNGG	2 cut(s)	363, 585
BseGI	GGATG	4 cut(s)	325, 480, 675, 681
BseLI	CCNNNNNNNGG	4 cut(s)	251, 463, 574, 666
BseMI	GCAATG	1 cut(s)	45
BseNI	ACTGG	1 cut(s)	467
BseRI	GAGGAG	4 cut(s)	167, 368, 528, 570
BseYI	CCCAGC	2 cut(s)	119, 306
BsgI	GTGCAG	1 cut(s)	494
Bsh1236I	CGCG	1 cut(s)	575
BshFI	GGCC	3 cut(s)	118, 128, 324
BshNI	GGYRCC	1 cut(s)	562
BsiHKCI	CYCGRG	2 cut(s)	567, 585
BsiSI	CCGG	6 cut(s)	115, 249, 284, 292, 473, 586
BslFI	GGGAC	1 cut(s)	324
BslI	CCNNNNNNNGG	4 cut(s)	251, 463, 574, 666
BsmAI	GTCTC	1 cut(s)	564
BsmBI	CGTCTC	1 cut(s)	564
BsmFI	GGGAC	1 cut(s)	324
BsmI	GAATGC	1 cut(s)	335
BsnI	GGCC	3 cut(s)	118, 128, 324
BsoBI	CYCGRG	2 cut(s)	567, 585
Bsp1286I	GDGCHC	1 cut(s)	360
BspACI	CCGC	8 cut(s)	231, 252, 257, 449, 457, 575, 578, 666
BspANI	GGCC	3 cut(s)	118, 128, 324
BspFNI	CGCG	1 cut(s)	575
BspLI	GGNNCC	2 cut(s)	229, 564
BspMI	ACCTGC	1 cut(s)	452
BspT107I	GGYRCC	1 cut(s)	562
BsrBI	CCGCTC	1 cut(s)	451
BsrDI	GCAATG	1 cut(s)	45
BsrI	ACTGG	1 cut(s)	467
BssECI	CCNNGG	2 cut(s)	363, 585
BssNI	GRCGYC	2 cut(s)	563, 612
BstACI	GRCGYC	2 cut(s)	563, 612
BstAPI	GCANNNNNTGC	1 cut(s)	47
BstBAI	YACGTR	1 cut(s)	406
BstC8I	GCNNGC	5 cut(s)	200, 392, 396, 449, 527
BstF5I	GGATG	4 cut(s)	325, 480, 675, 681
BstFNI	CGCG	1 cut(s)	575
BstH2I	RGCGCY	1 cut(s)	566
BstHHI	GCGC	1 cut(s)	565
BstMAI	GTCTC	1 cut(s)	564
BstMWI	GCNNNNNNNGC	7 cut(s)	47, 199, 204, 330, 339, 453, 632
BstSCI	CCNGG	5 cut(s)	247, 282, 471, 584, 585
BstUI	CGCG	1 cut(s)	575
BstV2I	GAAGAC	3 cut(s)	254, 483, 501
BstXI	CCANNNNNNTGG	1 cut(s)	551
BsuRI	GGCC	3 cut(s)	118, 128, 324
BtsCI	GGATG	4 cut(s)	325, 480, 675, 681
BtsI	GCAGTG	3 cut(s)	65, 90, 193
BtsIMutI	CAGTG	3 cut(s)	65, 90, 193
BveI	ACCTGC	1 cut(s)	452
Cac8I	GCNNGC	5 cut(s)	200, 392, 396, 449, 527
CfoI	GCGC	1 cut(s)	565
Cfr13I	GGNCC	2 cut(s)	117, 367
Cfr9I	CCCGGG	1 cut(s)	585
CseI	GACGC	4 cut(s)	322, 403, 506, 581
Csp6I	GTAC	1 cut(s)	27
CviAII	CATG	1 cut(s)	124
CviJI	RGCY	8 cut(s)	118, 128, 324, 358, 427, 525, 529, 626
CviKI_1	RGCY	8 cut(s)	118, 128, 324, 358, 427, 525, 529, 626
CviQI	GTAC	1 cut(s)	27
DinI	GGCGCC	1 cut(s)	564
EaeI	YGGCCR	1 cut(s)	126
EciI	GGCGGA	1 cut(s)	593
Eco24I	GRGCYC	1 cut(s)	360
Eco47I	GGWCC	1 cut(s)	367
Eco72I	CACGTG	1 cut(s)	406
Eco88I	CYCGRG	2 cut(s)	567, 585
EcoO109I	RGGNCCY	1 cut(s)	367
EcoT38I	GRGCYC	1 cut(s)	360
EgeI	GGCGCC	1 cut(s)	564
EheI	GGCGCC	1 cut(s)	564
Esp3I	CGTCTC	1 cut(s)	564
FaeI	CATG	1 cut(s)	127
FaiI	YATR	2 cut(s)	125, 131
FalI	AAGNNNNNCTT	2 cut(s)	383, 415
FaqI	GGGAC	1 cut(s)	324
FatI	CATG	1 cut(s)	123
FauI	CCCGC	4 cut(s)	245, 250, 456, 659
FblI	GTMKAC	2 cut(s)	417, 468
Fnu4HI	GCNGC	2 cut(s)	457, 576
FokI	GGATG	4 cut(s)	332, 467, 682, 688
FriOI	GRGCYC	1 cut(s)	360
Fsp4HI	GCNGC	2 cut(s)	457, 576
FspBI	CTAG	5 cut(s)	23, 30, 501, 647, 689
GlaI	GCGC	1 cut(s)	564
GluI	GCNGC	2 cut(s)	457, 576
GsaI	CCCAGC	2 cut(s)	123, 310
GsuI	CTGGAG	1 cut(s)	223
HaeII	RGCGCY	1 cut(s)	566
HaeIII	GGCC	3 cut(s)	118, 128, 324
HapII	CCGG	6 cut(s)	115, 249, 284, 292, 473, 586
HgaI	GACGC	4 cut(s)	322, 403, 506, 581
HhaI	GCGC	1 cut(s)	565
Hin1I	GRCGYC	2 cut(s)	563, 612
Hin1II	CATG	1 cut(s)	127
Hin6I	GCGC	1 cut(s)	563
HinP1I	GCGC	1 cut(s)	563
HincII	GTYRAC	2 cut(s)	418, 469
HindII	GTYRAC	2 cut(s)	418, 469
HinfI	GANTC	7 cut(s)	236, 275, 351, 504, 535, 581, 650
HpaII	CCGG	6 cut(s)	115, 249, 284, 292, 473, 586
HphI	GGTGA	2 cut(s)	337, 533
Hpy166II	GTNNAC	3 cut(s)	88, 418, 469
Hpy188I	TCNGA	3 cut(s)	140, 147, 224
Hpy188III	TCNNGA	2 cut(s)	240, 382
Hpy8I	GTNNAC	3 cut(s)	88, 418, 469
Hpy99I	CGWCG	7 cut(s)	272, 275, 338, 419, 614, 617, 640
HpyAV	CCTTC	3 cut(s)	121, 289, 409
HpyCH4IV	ACGT	6 cut(s)	56, 167, 405, 547, 612, 638
HpyCH4V	TGCA	3 cut(s)	198, 390, 511
HpyF10VI	GCNNNNNNNGC	7 cut(s)	47, 199, 204, 330, 339, 453, 632
HpySE526I	ACGT	6 cut(s)	56, 167, 405, 547, 612, 638
Hsp92I	GRCGYC	2 cut(s)	563, 612
Hsp92II	CATG	1 cut(s)	127
HspAI	GCGC	1 cut(s)	563
KasI	GGCGCC	1 cut(s)	562
MaeI	CTAG	5 cut(s)	23, 30, 501, 647, 689
MaeII	ACGT	6 cut(s)	56, 167, 405, 547, 612, 638
MaeIII	GTNAC	1 cut(s)	300
MbiI	CCGCTC	1 cut(s)	451
MboII	GAAGA	6 cut(s)	164, 208, 254, 488, 506, 691
MhlI	GDGCHC	1 cut(s)	360
MlsI	TGGCCA	1 cut(s)	128
MluCI	AATT	1 cut(s)	6
MluNI	TGGCCA	1 cut(s)	128
Mly113I	GGCGCC	1 cut(s)	563
MlyI	GAGTC	3 cut(s)	230, 284, 529
MmeI	TCCRAC	1 cut(s)	118
Mox20I	TGGCCA	1 cut(s)	128
MscI	TGGCCA	1 cut(s)	128
MseI	TTAA	1 cut(s)	81
MslI	CAYNNNNRTG	1 cut(s)	318
Msp20I	TGGCCA	1 cut(s)	128
MspA1I	CMGCKG	1 cut(s)	666
MspI	CCGG	6 cut(s)	115, 249, 284, 292, 473, 586
MspR9I	CCNGG	5 cut(s)	249, 284, 473, 586, 587
Mva1269I	GAATGC	1 cut(s)	335
MvnI	CGCG	1 cut(s)	575
MwoI	GCNNNNNNNGC	7 cut(s)	47, 199, 204, 330, 339, 453, 632
NarI	GGCGCC	1 cut(s)	563
NciI	CCSGG	5 cut(s)	249, 284, 473, 586, 587
NlaIII	CATG	1 cut(s)	127
NlaIV	GGNNCC	2 cut(s)	229, 564
NmeAIII	GCCGAG	1 cut(s)	121
NmuCI	GTSAC	1 cut(s)	300
PaqCI	CACCTGC	1 cut(s)	452
PcsI	WCGNNNNNNNCGW	4 cut(s)	333, 360, 402, 411
PctI	GAATGC	1 cut(s)	335
PfeI	GAWTC	4 cut(s)	351, 504, 581, 650
PflFI	GACNNNGTC	1 cut(s)	611
PkrI	GCNGC	2 cut(s)	458, 577
PleI	GAGTC	3 cut(s)	230, 283, 529
PluTI	GGCGCC	1 cut(s)	566
PmaCI	CACGTG	1 cut(s)	406
PmlI	CACGTG	1 cut(s)	406
PpsI	GAGTC	3 cut(s)	230, 283, 529
Ppu21I	YACGTR	1 cut(s)	406
PpuMI	RGGWCCY	1 cut(s)	367
Psp1406I	AACGTT	1 cut(s)	547
Psp5II	RGGWCCY	1 cut(s)	367
PspCI	CACGTG	1 cut(s)	406
PspFI	CCCAGC	2 cut(s)	119, 306
PspN4I	GGNNCC	2 cut(s)	229, 564
PspPI	GGNCC	2 cut(s)	117, 367
PspPPI	RGGWCCY	1 cut(s)	367
PsyI	GACNNNGTC	1 cut(s)	611
RsaI	GTAC	1 cut(s)	28
RsaNI	GTAC	1 cut(s)	27
RseI	CAYNNNNRTG	1 cut(s)	318
SalI	GTCGAC	2 cut(s)	416, 467
SaqAI	TTAA	1 cut(s)	81
SatI	GCNGC	2 cut(s)	457, 576
Sau96I	GGNCC	2 cut(s)	117, 367
SchI	GAGTC	3 cut(s)	230, 284, 529
ScrFI	CCNGG	5 cut(s)	249, 284, 473, 586, 587
SduI	GDGCHC	1 cut(s)	360
SfoI	GGCGCC	1 cut(s)	564
SinI	GGWCC	1 cut(s)	367
SmaI	CCCGGG	1 cut(s)	587
SmiMI	CAYNNNNRTG	1 cut(s)	318
Sse9I	AATT	1 cut(s)	6
SsiI	CCGC	8 cut(s)	231, 252, 257, 449, 457, 575, 578, 666
SspDI	GGCGCC	1 cut(s)	562
SspMI	CTAG	5 cut(s)	23, 30, 501, 647, 689
StyD4I	CCNGG	5 cut(s)	247, 282, 471, 584, 585
TaiI	ACGT	6 cut(s)	59, 170, 408, 550, 615, 641
TaqI	TCGA	6 cut(s)	273, 327, 354, 417, 468, 492
TasI	AATT	1 cut(s)	6
TauI	GCSGC	2 cut(s)	459, 578
TfiI	GAWTC	4 cut(s)	351, 504, 581, 650
Tru1I	TTAA	1 cut(s)	81
Tru9I	TTAA	1 cut(s)	81
TscAI	CASTG	3 cut(s)	72, 97, 200
TseFI	GTSAC	1 cut(s)	300
Tsp45I	GTSAC	1 cut(s)	300
TspDTI	ATGAA	3 cut(s)	202, 208, 692
TspMI	CCCGGG	1 cut(s)	585
TspRI	CASTG	3 cut(s)	72, 97, 200
Tth111I	GACNNNGTC	1 cut(s)	611
VpaK11BI	GGWCC	1 cut(s)	367
XmaI	CCCGGG	1 cut(s)	585
XmiI	GTMKAC	2 cut(s)	417, 468
XspI	CTAG	5 cut(s)	23, 30, 501, 647, 689
ZraI	GACGTC	1 cut(s)	613

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.