Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0002352

Physical Location & Seq

Genomic Coordinates Reverse (-)

66316562 .. 66317203

Gene Structure 642 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG449700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

ATGGTAATTTTTCATTACCATCTAGGTACCAGAACCAGAGCAGACATTGCTACAACGTCTGCTTCACCGCCGCCACTTGTTAATGTGGACATCGCCGAGAAACCCAAGTCGTTCCGGCCCAGCATGGCCATAATGGTCGGAGTTCTGATGACTCTGTTCTCCTTCATGTTTCTTCTCCTCCTCTACTCCAAGCACTGCAAGCGCGGCAGCTTCGTCGTCATAGGAGGAACCACCGACTCCGGATCTCCCGGCGGGGTGGGTCTCCGTAAAAACTTAGGAATCGACCAGGCCGTCGTCGAGTCCCTCCCGGTTTTCCAGTTCAGGTCTCTCAGGGAACACAAGGACGGCCTCGAATGCACCATCTGCCTCACCCGAATCGAGCCCACCGAAGTCCTCCGCCTCCTCCCGAAATGCAAGCACCCCTTGCACGTGGAGTGCGTCGACACGTGGCTCGACGCCCACTCGACCTGCCCGCTCTGCCGCTACCGGGTCGACCCAGAAGACATCCTCCTAATCGAAGACGCCAGAATCCTGCACTACCAGAACAGCCAGCCCCAGACTCCCCACCAAAACGACGTCGTCATCAACATCGAACTGACCCAGGAATCCGCAGCGTCTCGGGGCGCCACTCCTCCGCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

213

Amino Acids

23.67

Weight (kDa)

6.74

Isoelectric Point (pI)

55.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	118 - 161	2.6e-12	Ring finger domain
zf-RING_11	PF17123	118 - 147	2.5e-07	RING-like zinc finger
zf-C3HC4_2	PF13923	118 - 160	2e-06	Zinc finger, C3HC4 type (RING finger)
zf-rbx1	PF12678	131 - 161	9.6e-06	RING-H2 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002352)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G05810
fragaria_vesca	FvH4_4g06660
malus_domestica	MD13G1236900.v1.1 MD16G1242200.v1.1
prunus_persica	Prupe.1G069300_v2.0.a1
pyrus_communis	pycom13g20980 pycom16g20300
rosa_chinensis	RchiOBHm_Chr3g0495141 RchiOBHm_Chr4g0398561
rosa_laevigata	RLG00000009344 RLG00000026064 RLG00000029692 RLG00000030599 RLG00000032695 RLG00000032696
rosa_multiflora	Rmu_co8139468.1_g000001 Rmu_co8270033.1_g000001 Rmu_co8275827.1_g000001 Rmu_sc0000185.1_g000029 Rmu_sc0000990.1_g000016 Rmu_sc0005217.1_g000007 Rmu_sc0005996.1_g000027 Rmu_sc0009001.1_g000015 Rmu_sc0013727.1_g000001 Rmu_sc0016350.1_g000001
rosa_roxburghii	Rroxscaffold_5G00343530
rosa_rugosa	Rorug04G0009400
rosa_samantha	Rh1AG207300 Rh2AG231000 Rh2AG449700 Rh2CG436600 Rh2DG238800 Rh3DG271300 Rh4AG087300 Rh4BG083900 Rh4CG095500 Rh4DG078800 Rh4DG124400 Rh5DG085200 Rh6BG230400
rosa_wichuraiana	Rw1G018260 Rw1G018370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	290
AatII	GACGTC	1 cut(s)	579
Acc36I	ACCTGC	1 cut(s)	476
Acc65I	GGTACC	1 cut(s)	26
AccB1I	GGYRCC	2 cut(s)	26, 623
AccBSI	CCGCTC	1 cut(s)	475
AccI	GTMKAC	2 cut(s)	441, 492
AccII	CGCG	1 cut(s)	204
AccIII	TCCGGA	1 cut(s)	239
AciI	CCGC	9 cut(s)	68, 71, 204, 252, 397, 473, 481, 609, 635
AclWI	GGATC	1 cut(s)	250
AcoI	YGGCCR	1 cut(s)	126
AcvI	CACGTG	2 cut(s)	430, 447
AcyI	GRCGYC	4 cut(s)	456, 522, 576, 624
AfaI	GTAC	1 cut(s)	28
AfiI	CCNNNNNNNGG	1 cut(s)	487
AflIII	ACRYGT	1 cut(s)	444
AjnI	CCWGG	2 cut(s)	285, 600
AluBI	AGCT	1 cut(s)	210
AluI	AGCT	1 cut(s)	210
Alw26I	GTCTC	3 cut(s)	266, 330, 621
AlwI	GGATC	1 cut(s)	250
Ama87I	CYCGRG	1 cut(s)	618
Aor13HI	TCCGGA	1 cut(s)	239
AoxI	GGCC	4 cut(s)	116, 126, 288, 346
ApeKI	GCWGC	2 cut(s)	207, 611
Asp718I	GGTACC	1 cut(s)	26
AspLEI	GCGC	2 cut(s)	204, 626
AspS9I	GGNCC	1 cut(s)	117
AsuC2I	CCSGG	3 cut(s)	249, 308, 488
AsuHPI	GGTGA	2 cut(s)	57, 361
AvaI	CYCGRG	1 cut(s)	618
BalI	TGGCCA	1 cut(s)	128
BanI	GGYRCC	2 cut(s)	26, 623
BanII	GRGCYC	1 cut(s)	384
BbrPI	CACGTG	2 cut(s)	430, 447
BbsI	GAAGAC	2 cut(s)	507, 525
BbvI	GCAGC	2 cut(s)	219, 623
BccI	CCATC	2 cut(s)	27, 368
BceAI	ACGGC	2 cut(s)	275, 361
BcgI	CGANNNNNNTGC	2 cut(s)	196, 230
BciT130I	CCWGG	2 cut(s)	287, 602
BcnI	CCSGG	3 cut(s)	249, 308, 488
BcoDI	GTCTC	3 cut(s)	266, 330, 621
BfaI	CTAG	1 cut(s)	23
BfoI	RGCGCY	1 cut(s)	627
BfuAI	ACCTGC	1 cut(s)	476
BisI	GCNGC	5 cut(s)	71, 205, 208, 481, 612
BlsI	GCNGC	5 cut(s)	72, 206, 209, 482, 613
Bme1390I	CCNGG	5 cut(s)	249, 287, 308, 488, 602
BmeT110I	CYCGRG	1 cut(s)	618
BmgT120I	GGNCC	1 cut(s)	117
BmiI	GGNNCC	3 cut(s)	28, 229, 625
BmrFI	CCNGG	5 cut(s)	249, 287, 308, 488, 602
BpiI	GAAGAC	2 cut(s)	507, 525
BpuMI	CCSGG	3 cut(s)	249, 308, 488
BsaAI	YACGTR	2 cut(s)	430, 447
BsaHI	GRCGYC	4 cut(s)	456, 522, 576, 624
BsaI	GGTCTC	2 cut(s)	266, 330
BsaJI	CCNNGG	1 cut(s)	600
BsaWI	WCCGGW	1 cut(s)	239
Bsc4I	CCNNNNNNNGG	1 cut(s)	487
Bse1I	ACTGG	1 cut(s)	316
Bse3DI	GCAATG	1 cut(s)	45
BseAI	TCCGGA	1 cut(s)	239
BseBI	CCWGG	2 cut(s)	287, 602
BseDI	CCNNGG	1 cut(s)	600
BseGI	GGATG	1 cut(s)	504
BseLI	CCNNNNNNNGG	1 cut(s)	487
BseMI	GCAATG	1 cut(s)	45
BseMII	CTCAG	1 cut(s)	343
BseNI	ACTGG	1 cut(s)	316
BseRI	GAGGAG	4 cut(s)	167, 170, 392, 621
BseXI	GCAGC	2 cut(s)	219, 623
BseYI	CCCAGC	1 cut(s)	119
BsgI	GTGCAG	1 cut(s)	518
Bsh1236I	CGCG	1 cut(s)	204
BshFI	GGCC	4 cut(s)	118, 128, 290, 348
BshNI	GGYRCC	2 cut(s)	26, 623
BsiHKCI	CYCGRG	1 cut(s)	618
BsiSI	CCGG	5 cut(s)	115, 240, 249, 308, 487
BslFI	GGGAC	1 cut(s)	286
BslI	CCNNNNNNNGG	1 cut(s)	487
BsmAI	GTCTC	3 cut(s)	266, 330, 621
BsmBI	CGTCTC	1 cut(s)	621
BsmFI	GGGAC	1 cut(s)	286
BsmI	GAATGC	1 cut(s)	359
BsnI	GGCC	4 cut(s)	118, 128, 290, 348
Bso31I	GGTCTC	2 cut(s)	266, 330
BsoBI	CYCGRG	1 cut(s)	618
Bsp1286I	GDGCHC	1 cut(s)	384
Bsp13I	TCCGGA	1 cut(s)	239
Bsp143I	GATC	1 cut(s)	242
BspACI	CCGC	9 cut(s)	68, 71, 204, 252, 397, 473, 481, 609, 635
BspANI	GGCC	4 cut(s)	118, 128, 290, 348
BspCNI	CTCAG	1 cut(s)	342
BspEI	TCCGGA	1 cut(s)	239
BspFNI	CGCG	1 cut(s)	204
BspLI	GGNNCC	3 cut(s)	28, 229, 625
BspMI	ACCTGC	1 cut(s)	476
BspPI	GGATC	1 cut(s)	250
BspT107I	GGYRCC	2 cut(s)	26, 623
BspTNI	GGTCTC	2 cut(s)	266, 330
BsrBI	CCGCTC	1 cut(s)	475
BsrDI	GCAATG	1 cut(s)	45
BsrI	ACTGG	1 cut(s)	316
BssECI	CCNNGG	1 cut(s)	600
BssMI	GATC	1 cut(s)	242
BssNI	GRCGYC	4 cut(s)	456, 522, 576, 624
Bst2UI	CCWGG	2 cut(s)	287, 602
BstACI	GRCGYC	4 cut(s)	456, 522, 576, 624
BstAPI	GCANNNNNTGC	3 cut(s)	47, 363, 424
BstBAI	YACGTR	2 cut(s)	430, 447
BstC8I	GCNNGC	4 cut(s)	200, 416, 473, 551
BstDEI	CTNAG	2 cut(s)	274, 329
BstF5I	GGATG	1 cut(s)	504
BstFNI	CGCG	1 cut(s)	204
BstH2I	RGCGCY	1 cut(s)	627
BstHHI	GCGC	2 cut(s)	204, 626
BstKTI	GATC	1 cut(s)	245
BstMAI	GTCTC	3 cut(s)	266, 330, 621
BstMBI	GATC	1 cut(s)	242
BstMWI	GCNNNNNNNGC	7 cut(s)	47, 199, 204, 354, 363, 424, 477
BstNI	CCWGG	2 cut(s)	287, 602
BstSCI	CCNGG	5 cut(s)	247, 285, 306, 486, 600
BstUI	CGCG	1 cut(s)	204
BstV1I	GCAGC	2 cut(s)	219, 623
BstV2I	GAAGAC	2 cut(s)	507, 525
BstX2I	RGATCY	1 cut(s)	242
BstYI	RGATCY	1 cut(s)	242
BsuRI	GGCC	4 cut(s)	118, 128, 290, 348
BtgZI	GCGATG	1 cut(s)	76
BtsCI	GGATG	1 cut(s)	504
BtsI	GCAGTG	1 cut(s)	193
BtsIMutI	CAGTG	1 cut(s)	193
BveI	ACCTGC	1 cut(s)	476
Cac8I	GCNNGC	4 cut(s)	200, 416, 473, 551
CfoI	GCGC	2 cut(s)	204, 626
Cfr13I	GGNCC	1 cut(s)	117
CseI	GACGC	4 cut(s)	427, 464, 530, 603
Csp6I	GTAC	1 cut(s)	27
CviAII	CATG	2 cut(s)	124, 166
CviJI	RGCY	9 cut(s)	118, 128, 210, 290, 348, 382, 451, 549, 553
CviKI_1	RGCY	9 cut(s)	118, 128, 210, 290, 348, 382, 451, 549, 553
CviQI	GTAC	1 cut(s)	27
DdeI	CTNAG	2 cut(s)	274, 329
DinI	GGCGCC	1 cut(s)	625
DpnI	GATC	1 cut(s)	244
DpnII	GATC	1 cut(s)	242
DrdI	GACNNNNNNGTC	1 cut(s)	290
DseDI	GACNNNNNNGTC	1 cut(s)	290
EaeI	YGGCCR	1 cut(s)	126
EciI	GGCGGA	2 cut(s)	386, 624
Eco24I	GRGCYC	1 cut(s)	384
Eco31I	GGTCTC	2 cut(s)	266, 330
Eco72I	CACGTG	2 cut(s)	430, 447
Eco88I	CYCGRG	1 cut(s)	618
EcoRII	CCWGG	2 cut(s)	285, 600
EcoT38I	GRGCYC	1 cut(s)	384
EgeI	GGCGCC	1 cut(s)	625
EheI	GGCGCC	1 cut(s)	625
Esp3I	CGTCTC	1 cut(s)	621
FaeI	CATG	2 cut(s)	127, 169
FaiI	YATR	4 cut(s)	125, 131, 167, 221
FalI	AAGNNNNNCTT	2 cut(s)	407, 439
FaqI	GGGAC	1 cut(s)	286
FatI	CATG	2 cut(s)	123, 165
FauI	CCCGC	2 cut(s)	245, 480
FblI	GTMKAC	2 cut(s)	441, 492
Fnu4HI	GCNGC	5 cut(s)	71, 205, 208, 481, 612
FokI	GGATG	1 cut(s)	491
FriOI	GRGCYC	1 cut(s)	384
Fsp4HI	GCNGC	5 cut(s)	71, 205, 208, 481, 612
FspBI	CTAG	1 cut(s)	23
GlaI	GCGC	2 cut(s)	203, 625
GluI	GCNGC	5 cut(s)	71, 205, 208, 481, 612
GsaI	CCCAGC	1 cut(s)	123
HaeII	RGCGCY	1 cut(s)	627
HaeIII	GGCC	4 cut(s)	118, 128, 290, 348
HapII	CCGG	5 cut(s)	115, 240, 249, 308, 487
HgaI	GACGC	4 cut(s)	427, 464, 530, 603
HhaI	GCGC	2 cut(s)	204, 626
Hin1I	GRCGYC	4 cut(s)	456, 522, 576, 624
Hin1II	CATG	2 cut(s)	127, 169
Hin6I	GCGC	2 cut(s)	202, 624
HinP1I	GCGC	2 cut(s)	202, 624
HincII	GTYRAC	2 cut(s)	442, 493
HindII	GTYRAC	2 cut(s)	442, 493
HinfI	GANTC	8 cut(s)	151, 236, 279, 299, 375, 528, 559, 605
HpaII	CCGG	5 cut(s)	115, 240, 249, 308, 487
HphI	GGTGA	2 cut(s)	57, 361
Hpy166II	GTNNAC	3 cut(s)	88, 442, 493
Hpy188I	TCNGA	2 cut(s)	140, 147
Hpy188III	TCNNGA	2 cut(s)	240, 406
Hpy8I	GTNNAC	3 cut(s)	88, 442, 493
Hpy99I	CGWCG	7 cut(s)	218, 296, 299, 443, 458, 578, 581
HpyAV	CCTTC	1 cut(s)	172
HpyCH4IV	ACGT	4 cut(s)	56, 429, 446, 576
HpyCH4V	TGCA	5 cut(s)	198, 357, 414, 427, 535
HpyF10VI	GCNNNNNNNGC	7 cut(s)	47, 199, 204, 354, 363, 424, 477
HpyF3I	CTNAG	2 cut(s)	274, 329
HpySE526I	ACGT	4 cut(s)	56, 429, 446, 576
Hsp92I	GRCGYC	4 cut(s)	456, 522, 576, 624
Hsp92II	CATG	2 cut(s)	127, 169
HspAI	GCGC	2 cut(s)	202, 624
KasI	GGCGCC	1 cut(s)	623
Kpn2I	TCCGGA	1 cut(s)	239
KpnI	GGTACC	1 cut(s)	30
Kzo9I	GATC	1 cut(s)	242
Lsp1109I	GCAGC	2 cut(s)	219, 623
MaeI	CTAG	1 cut(s)	23
MaeII	ACGT	4 cut(s)	56, 429, 446, 576
MalI	GATC	1 cut(s)	244
MbiI	CCGCTC	1 cut(s)	475
MboI	GATC	1 cut(s)	242
MboII	GAAGA	3 cut(s)	164, 512, 530
MflI	RGATCY	1 cut(s)	242
MhlI	GDGCHC	1 cut(s)	384
MlsI	TGGCCA	1 cut(s)	128
MluCI	AATT	1 cut(s)	6
MluNI	TGGCCA	1 cut(s)	128
Mly113I	GGCGCC	1 cut(s)	624
MlyI	GAGTC	4 cut(s)	145, 230, 308, 553
MmeI	TCCRAC	1 cut(s)	118
Mox20I	TGGCCA	1 cut(s)	128
MroI	TCCGGA	1 cut(s)	239
MscI	TGGCCA	1 cut(s)	128
MseI	TTAA	1 cut(s)	81
Msp20I	TGGCCA	1 cut(s)	128
MspI	CCGG	5 cut(s)	115, 240, 249, 308, 487
MspR9I	CCNGG	5 cut(s)	249, 287, 308, 488, 602
Mva1269I	GAATGC	1 cut(s)	359
MvaI	CCWGG	2 cut(s)	287, 602
MvnI	CGCG	1 cut(s)	204
MwoI	GCNNNNNNNGC	7 cut(s)	47, 199, 204, 354, 363, 424, 477
NarI	GGCGCC	1 cut(s)	624
NciI	CCSGG	3 cut(s)	249, 308, 488
NdeII	GATC	1 cut(s)	242
NlaIII	CATG	2 cut(s)	127, 169
NlaIV	GGNNCC	3 cut(s)	28, 229, 625
NmeAIII	GCCGAG	1 cut(s)	121
PcsI	WCGNNNNNNNCGW	3 cut(s)	288, 384, 435
PctI	GAATGC	1 cut(s)	359
PfeI	GAWTC	4 cut(s)	279, 375, 528, 605
PflFI	GACNNNGTC	1 cut(s)	578
PkrI	GCNGC	5 cut(s)	72, 206, 209, 482, 613
PleI	GAGTC	4 cut(s)	145, 230, 307, 553
PluTI	GGCGCC	1 cut(s)	627
PmaCI	CACGTG	2 cut(s)	430, 447
PmlI	CACGTG	2 cut(s)	430, 447
PpsI	GAGTC	4 cut(s)	145, 230, 307, 553
Ppu21I	YACGTR	2 cut(s)	430, 447
Psp6I	CCWGG	2 cut(s)	285, 600
PspCI	CACGTG	2 cut(s)	430, 447
PspFI	CCCAGC	1 cut(s)	119
PspGI	CCWGG	2 cut(s)	285, 600
PspN4I	GGNNCC	3 cut(s)	28, 229, 625
PspPI	GGNCC	1 cut(s)	117
PsuI	RGATCY	1 cut(s)	242
PsyI	GACNNNGTC	1 cut(s)	578
RsaI	GTAC	1 cut(s)	28
RsaNI	GTAC	1 cut(s)	27
SalI	GTCGAC	2 cut(s)	440, 491
SaqAI	TTAA	1 cut(s)	81
SatI	GCNGC	5 cut(s)	71, 205, 208, 481, 612
Sau3AI	GATC	1 cut(s)	242
Sau96I	GGNCC	1 cut(s)	117
SchI	GAGTC	4 cut(s)	145, 230, 308, 553
ScrFI	CCNGG	5 cut(s)	249, 287, 308, 488, 602
SduI	GDGCHC	1 cut(s)	384
SetI	ASST	8 cut(s)	28, 59, 212, 326, 432, 449, 470, 579
SfoI	GGCGCC	1 cut(s)	625
Sse9I	AATT	1 cut(s)	6
SsiI	CCGC	9 cut(s)	68, 71, 204, 252, 397, 473, 481, 609, 635
SspDI	GGCGCC	1 cut(s)	623
SspMI	CTAG	1 cut(s)	23
StyD4I	CCNGG	5 cut(s)	247, 285, 306, 486, 600
TaiI	ACGT	4 cut(s)	59, 432, 449, 579
TasI	AATT	1 cut(s)	6
TauI	GCSGC	3 cut(s)	73, 207, 483
TfiI	GAWTC	4 cut(s)	279, 375, 528, 605
Tru1I	TTAA	1 cut(s)	81
Tru9I	TTAA	1 cut(s)	81
TscAI	CASTG	1 cut(s)	200
TseI	GCWGC	2 cut(s)	207, 611
TspDTI	ATGAA	1 cut(s)	154
TspGWI	ACGGA	1 cut(s)	254
TspRI	CASTG	1 cut(s)	200
Tth111I	GACNNNGTC	1 cut(s)	578
XmiI	GTMKAC	2 cut(s)	441, 492
XspI	CTAG	1 cut(s)	23
ZraI	GACGTC	1 cut(s)	577

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.