Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0002352

Physical Location & Seq

Genomic Coordinates Forward (+)

17917647 .. 17919663

Gene Structure 2017 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000032695

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

ATGTATTGGAAGGCTGTACCACCTATTGACAATTCTCGATGTCGGCGAAGCCCATCACTACAAGCATTCGCTCAAGCTTTCACCAAATCAGAGCGCAACTCCGCAGTCCCCCATTTGCATTGGATATCACCTGTTTCTGGACACAAAGCAGCAGCTTCCTTTGGAGATCAGCGCACGAATTTCCCTTGTGAAGGCCAGTCCTCGTTGCCATTAGGGCACACCTTCTTTCCCTCTCTAGGCAAAGAAGCAAAGCCGTTTAGTTGTACCAGAACCAGAGCAGACATTGCTACAACGACTGCTTCACCGCCGCCACCTGTTAATGTGGACACCGCCGAGAAACCCAAGTCGTTCCGGCCCAGCATGGCCATAATGGTCGGAGTTCTGACGACTCTGTTCTTCTTCAAGTTTCTTCTCTTCCTCTACGCCAAGCACTTCAAGTGCGGCAGCTTCGTCGTCATCGAAGGAACCGCCGACTCCGGACCTCCCGGTGGGGCGAGTCTCCGTAAAAACTCCGGAATCGACTGGGCCGTTGTCAAGTCCCTCTCGGTTTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

185

Amino Acids

20.0

Weight (kDa)

9.81

Isoelectric Point (pI)

50.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002352)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G05810
fragaria_vesca	FvH4_4g06660
malus_domestica	MD13G1236900.v1.1 MD16G1242200.v1.1
prunus_persica	Prupe.1G069300_v2.0.a1
pyrus_communis	pycom13g20980 pycom16g20300
rosa_chinensis	RchiOBHm_Chr3g0495141 RchiOBHm_Chr4g0398561
rosa_laevigata	RLG00000009344 RLG00000026064 RLG00000029692 RLG00000030599 RLG00000032695 RLG00000032696
rosa_multiflora	Rmu_co8139468.1_g000001 Rmu_co8270033.1_g000001 Rmu_co8275827.1_g000001 Rmu_sc0000185.1_g000029 Rmu_sc0000990.1_g000016 Rmu_sc0005217.1_g000007 Rmu_sc0005996.1_g000027 Rmu_sc0009001.1_g000015 Rmu_sc0013727.1_g000001 Rmu_sc0016350.1_g000001
rosa_roxburghii	Rroxscaffold_5G00343530
rosa_rugosa	Rorug04G0009400
rosa_samantha	Rh1AG207300 Rh2AG231000 Rh2AG449700 Rh2CG436600 Rh2DG238800 Rh3DG271300 Rh4AG087300 Rh4BG083900 Rh4CG095500 Rh4DG078800 Rh4DG124400 Rh5DG085200 Rh6BG230400
rosa_wichuraiana	Rw1G018260 Rw1G018370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	2 cut(s)	476, 512
AciI	CCGC	6 cut(s)	102, 305, 308, 330, 441, 468
AcoI	YGGCCR	1 cut(s)	363
AcsI	RAATTY	1 cut(s)	178
AfaI	GTAC	2 cut(s)	18, 265
AfiI	CCNNNNNNNGG	4 cut(s)	137, 191, 236, 488
AgsI	TTSAA	2 cut(s)	403, 436
AluBI	AGCT	3 cut(s)	77, 155, 447
AluI	AGCT	3 cut(s)	77, 155, 447
Alw26I	GTCTC	1 cut(s)	503
Aor13HI	TCCGGA	2 cut(s)	476, 512
AoxI	GGCC	4 cut(s)	193, 353, 363, 525
ApeKI	GCWGC	3 cut(s)	149, 152, 444
ApoI	RAATTY	1 cut(s)	178
AspLEI	GCGC	2 cut(s)	96, 174
AspS9I	GGNCC	3 cut(s)	354, 479, 525
AsuC2I	CCSGG	1 cut(s)	486
AsuHPI	GGTGA	3 cut(s)	73, 120, 294
AvaII	GGWCC	1 cut(s)	479
BaeGI	GKGCMC	1 cut(s)	219
BalI	TGGCCA	1 cut(s)	365
BbvI	GCAGC	3 cut(s)	161, 164, 456
BccI	CCATC	1 cut(s)	61
BceAI	ACGGC	2 cut(s)	238, 512
BcgI	CGANNNNNNTGC	2 cut(s)	433, 467
BcnI	CCSGG	1 cut(s)	486
BcoDI	GTCTC	1 cut(s)	503
BfaI	CTAG	1 cut(s)	236
BglI	GCCNNNNNGGC	1 cut(s)	214
BisI	GCNGC	5 cut(s)	150, 153, 308, 442, 445
BlsI	GCNGC	5 cut(s)	151, 154, 309, 443, 446
Bme1390I	CCNGG	1 cut(s)	486
Bme18I	GGWCC	1 cut(s)	479
BmgT120I	GGNCC	3 cut(s)	354, 479, 525
BmiI	GGNNCC	1 cut(s)	466
BmrFI	CCNGG	1 cut(s)	486
BmrI	ACTGGG	1 cut(s)	532
BmuI	ACTGGG	1 cut(s)	532
BplI	GAGNNNNNCTC	2 cut(s)	83, 115
BpuEI	CTTGAG	1 cut(s)	57
BpuMI	CCSGG	1 cut(s)	486
BsaWI	WCCGGW	2 cut(s)	476, 512
Bsc4I	CCNNNNNNNGG	4 cut(s)	137, 191, 236, 488
Bse1I	ACTGG	2 cut(s)	196, 527
Bse3DI	GCAATG	1 cut(s)	282
BseAI	TCCGGA	2 cut(s)	476, 512
BseLI	CCNNNNNNNGG	4 cut(s)	137, 191, 236, 488
BseMI	GCAATG	1 cut(s)	282
BseNI	ACTGG	2 cut(s)	196, 527
BseSI	GKGCMC	1 cut(s)	219
BseXI	GCAGC	3 cut(s)	161, 164, 456
BseYI	CCCAGC	1 cut(s)	356
BshFI	GGCC	4 cut(s)	195, 355, 365, 527
BsiSI	CCGG	4 cut(s)	352, 477, 486, 513
BslFI	GGGAC	2 cut(s)	92, 523
BslI	CCNNNNNNNGG	4 cut(s)	137, 191, 236, 488
BsmAI	GTCTC	1 cut(s)	503
BsmFI	GGGAC	2 cut(s)	92, 523
BsmI	GAATGC	1 cut(s)	65
BsnI	GGCC	4 cut(s)	195, 355, 365, 527
Bsp1286I	GDGCHC	1 cut(s)	219
Bsp13I	TCCGGA	2 cut(s)	476, 512
Bsp143I	GATC	1 cut(s)	166
BspACI	CCGC	6 cut(s)	102, 305, 308, 330, 441, 468
BspANI	GGCC	4 cut(s)	195, 355, 365, 527
BspEI	TCCGGA	2 cut(s)	476, 512
BspLI	GGNNCC	1 cut(s)	466
BsrDI	GCAATG	1 cut(s)	282
BsrI	ACTGG	2 cut(s)	196, 527
BssMI	GATC	1 cut(s)	166
Bst6I	CTCTTC	1 cut(s)	419
BstAPI	GCANNNNNTGC	1 cut(s)	284
BstENI	CCTNNNNNAGG	1 cut(s)	189
BstHHI	GCGC	2 cut(s)	96, 174
BstKTI	GATC	1 cut(s)	169
BstMAI	GTCTC	1 cut(s)	503
BstMBI	GATC	1 cut(s)	166
BstMWI	GCNNNNNNNGC	2 cut(s)	214, 284
BstSCI	CCNGG	1 cut(s)	484
BstSLI	GKGCMC	1 cut(s)	219
BstV1I	GCAGC	3 cut(s)	161, 164, 456
BsuRI	GGCC	4 cut(s)	195, 355, 365, 527
CfoI	GCGC	2 cut(s)	96, 174
Cfr13I	GGNCC	3 cut(s)	354, 479, 525
Csp6I	GTAC	2 cut(s)	17, 264
CviAII	CATG	1 cut(s)	361
CviQI	GTAC	2 cut(s)	17, 264
DpnI	GATC	1 cut(s)	168
DpnII	GATC	1 cut(s)	166
EaeI	YGGCCR	1 cut(s)	363
Eam1104I	CTCTTC	1 cut(s)	419
EarI	CTCTTC	1 cut(s)	419
Eco32I	GATATC	1 cut(s)	126
Eco47I	GGWCC	1 cut(s)	479
EcoNI	CCTNNNNNAGG	1 cut(s)	189
EcoRV	GATATC	1 cut(s)	126
FaeI	CATG	1 cut(s)	364
FaiI	YATR	2 cut(s)	362, 368
FaqI	GGGAC	2 cut(s)	92, 523
FatI	CATG	1 cut(s)	360
Fnu4HI	GCNGC	5 cut(s)	150, 153, 308, 442, 445
Fsp4HI	GCNGC	5 cut(s)	150, 153, 308, 442, 445
FspBI	CTAG	1 cut(s)	236
GlaI	GCGC	2 cut(s)	95, 173
GluI	GCNGC	5 cut(s)	150, 153, 308, 442, 445
GsaI	CCCAGC	1 cut(s)	360
HaeIII	GGCC	4 cut(s)	195, 355, 365, 527
HapII	CCGG	4 cut(s)	352, 477, 486, 513
HhaI	GCGC	2 cut(s)	96, 174
Hin1II	CATG	1 cut(s)	364
Hin6I	GCGC	2 cut(s)	94, 172
HinP1I	GCGC	2 cut(s)	94, 172
HindIII	AAGCTT	1 cut(s)	75
HinfI	GANTC	4 cut(s)	388, 473, 496, 516
HpaII	CCGG	4 cut(s)	352, 477, 486, 513
HphI	GGTGA	3 cut(s)	73, 120, 294
Hpy166II	GTNNAC	1 cut(s)	325
Hpy188I	TCNGA	4 cut(s)	91, 377, 384, 554
Hpy188III	TCNNGA	4 cut(s)	36, 138, 477, 513
Hpy8I	GTNNAC	1 cut(s)	325
Hpy99I	CGWCG	1 cut(s)	455
HpyAV	CCTTC	4 cut(s)	4, 185, 232, 455
HpyCH4V	TGCA	1 cut(s)	118
HpyF10VI	GCNNNNNNNGC	2 cut(s)	214, 284
Hsp92II	CATG	1 cut(s)	364
HspAI	GCGC	2 cut(s)	94, 172
Kpn2I	TCCGGA	2 cut(s)	476, 512
Kzo9I	GATC	1 cut(s)	166
Lsp1109I	GCAGC	3 cut(s)	161, 164, 456
MaeI	CTAG	1 cut(s)	236
MalI	GATC	1 cut(s)	168
MboI	GATC	1 cut(s)	166
MboII	GAAGA	4 cut(s)	388, 391, 401, 406
MhlI	GDGCHC	1 cut(s)	219
MlsI	TGGCCA	1 cut(s)	365
MluCI	AATT	2 cut(s)	31, 178
MluNI	TGGCCA	1 cut(s)	365
MlyI	GAGTC	3 cut(s)	382, 467, 505
MmeI	TCCRAC	1 cut(s)	355
MnlI	CCTC	5 cut(s)	211, 241, 428, 492, 551
Mox20I	TGGCCA	1 cut(s)	365
MroI	TCCGGA	2 cut(s)	476, 512
MscI	TGGCCA	1 cut(s)	365
MseI	TTAA	1 cut(s)	318
Msp20I	TGGCCA	1 cut(s)	365
MspI	CCGG	4 cut(s)	352, 477, 486, 513
MspR9I	CCNGG	1 cut(s)	486
Mva1269I	GAATGC	1 cut(s)	65
MwoI	GCNNNNNNNGC	2 cut(s)	214, 284
NciI	CCSGG	1 cut(s)	486
NdeII	GATC	1 cut(s)	166
NlaIII	CATG	1 cut(s)	364
NlaIV	GGNNCC	1 cut(s)	466
NmeAIII	GCCGAG	1 cut(s)	358
PcsI	WCGNNNNNNNCGW	3 cut(s)	43, 456, 525
PctI	GAATGC	1 cut(s)	65
PfeI	GAWTC	1 cut(s)	516
PkrI	GCNGC	5 cut(s)	151, 154, 309, 443, 446
PleI	GAGTC	3 cut(s)	382, 467, 504
PpsI	GAGTC	3 cut(s)	382, 467, 504
PspFI	CCCAGC	1 cut(s)	356
PspN4I	GGNNCC	1 cut(s)	466
PspPI	GGNCC	3 cut(s)	354, 479, 525
RsaI	GTAC	2 cut(s)	18, 265
RsaNI	GTAC	2 cut(s)	17, 264
SaqAI	TTAA	1 cut(s)	318
SatI	GCNGC	5 cut(s)	150, 153, 308, 442, 445
Sau3AI	GATC	1 cut(s)	166
Sau96I	GGNCC	3 cut(s)	354, 479, 525
SchI	GAGTC	3 cut(s)	382, 467, 505
ScrFI	CCNGG	1 cut(s)	486
SduI	GDGCHC	1 cut(s)	219
SetI	ASST	8 cut(s)	25, 79, 133, 157, 224, 316, 449, 484
SinI	GGWCC	1 cut(s)	479
SmlI	CTYRAG	1 cut(s)	72
SmoI	CTYRAG	1 cut(s)	72
Sse9I	AATT	2 cut(s)	31, 178
SsiI	CCGC	6 cut(s)	102, 305, 308, 330, 441, 468
SspMI	CTAG	1 cut(s)	236
StyD4I	CCNGG	1 cut(s)	484
TaqI	TCGA	3 cut(s)	37, 459, 519
TasI	AATT	2 cut(s)	31, 178
TauI	GCSGC	2 cut(s)	310, 444
TfiI	GAWTC	1 cut(s)	516
Tru1I	TTAA	1 cut(s)	318
Tru9I	TTAA	1 cut(s)	318
TseI	GCWGC	3 cut(s)	149, 152, 444
TspGWI	ACGGA	1 cut(s)	491
VpaK11BI	GGWCC	1 cut(s)	479
XagI	CCTNNNNNAGG	1 cut(s)	189
XapI	RAATTY	1 cut(s)	178
XspI	CTAG	1 cut(s)	236

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.