AT5G06810
ERF Family

mitochondrial transcription termination

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0001228
Physical Location & Seq
Forward (+)
2108493 .. 2110259
1767 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G06810.1

Sequence Viewer

Length: 1767 bp
ATGAAACTTCGGCAAAACCCTAGTAGATTCACGTCTGTTCTCAAATGGGTATCACAACTTTCTCTAGAAACCCAATTAAAACCCTCAATTTCTGGAACTGGGTTTCTCCTCCGATGTGCCCAAACCCCTAGATCTTTCGCCACCGTCACCGGTAACGAAGTTTGCAGTGAGAAATCGAAAGTGAAGAGAACCCGAAATGGGTTTAAAATCACTCCCAATGTTAGGAAATTAGCTGAGGAAGCAATGTTGGATTATTTCTATTCCACTAGGGGTTTACAGTATATGGTTGCAGAGAGTATGAGCAAGAACAGTCCAATTTTTATTGATAATCTTTTGAAGAAAGTTGATTGTGTTACTGCTTCTGATATCAACCAATCTATTACTCGATATCTACGGTTTCACCCTGTCAATGAATTCGAGCCTTTCCTTGAGAGTTCAGGTTTGAATCCCAGTGAGTATAATCATTTGGTTCCCTGTGATAAGGTCTTCTTGGATGAAGAAGGCTTTTTGCTGGAGAACCATCATGTTTTGTGTTATAGTGGTGTTGACCCTAAGAGGATTGGGAAGATCTTCAAGGAAGCTAGGGAAGTTTTTAGTTATGAAACCGGGGTTTTAGCTTCTAAGATTAAGGCGTATGAGGATTTGGGGTTTAGCAGATTGTTTCTATCTAAGCTTATCGTTTGTAGTCCGAGAGTCTTGATGGGTCATACGAATATTGAACTGGTTCAGGTTGTAAAGACGTTGCAATCTTTAGGGTTTGAGTTCGAGTGGGTAATGGAAAACTTGTCAGATGAGGGACCTGATTGGAGCTCTGTGCATCGTGTTTTAAGCTTGCTTAGAGAAATCTGTTTTGATGAGGAAAAACTATATGGGTTAATCAGGAACTGTCCAAGTTTGCTTTTTGAGAATTCAGGGAAATGGACAGGGATTCTAGTTGGGTTTGAAACAAAGCTTGGGGCATCTAGAAGTGAACTATGTTCGTTGTTTCAGAAATTCCCGCTGATTCAAGTAGAGAAATGTGTTTCGAATCTAAGGCAGTGCTTCTTGTTCTTGAAAGAGATCGAGATGGAAGATGATGAGATTCATAAGGTTTTCCGTTCTCATTCCTGGTGGCTTGGTTCATGTAAGTTAAAGAAAACCAGTAGCTTGCTTGTGTTTTTGAAGGCTGGTAAAACTCGGGTTTGTCAGGTCATTCAAGAAAACCCTGAAGAGATGAAAAAATGGACAATGGGTTCAAAAATCCAGCCGTTACCAGCTACCAACGTAGACATTGAGTCGAAATCAATGAAGACTCAGTTCTTATTAGACCTCGGATACAAAGAAAACTCAGAGGAAATGGAGACAGCAATGAAGAATTTCCGTGGTAAAGGATCAGAACTCCGAGAGAGATTTAATGTCCTCGTAAGTTTGGGTTTTACCAAGAAAGATGTCAAAGATATGGTGAAAGCATGTCCTACTATGCTCTCCCAGACCTGTGATATCCTAGAATCAAAGGTGAACTACCTTATAAAGGAATTAGGTTATCCGCTTTCGACTTTGGTGGATTTCCCTTCATGTTTAAAGTTCACTCTTCAGCGGATGAAGCTCAGATTTGCAATGTTCTCTTGGCTTCAAGCCCGAGGAAAAGTAGACCGCAAGATCAAAGTTAGCACAATGCTCGCTTGCTCGGACAAAATATTCGTGAGTTTTTTTGTAAACCGTCATCCTGATGGGTCTAAGCATTTAGAGGATCTGAAGAAGCTGCATCTTTCAGTTGAAACAAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
mTERF

Protein Analysis

588

Amino Acids

67.45

Weight (kDa)

8.88

Isoelectric Point (pI)

33.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
mTERF PF02536 276 - 440 2.2e-10 mTERF
mTERF PF02536 459 - 560 2.3e-18 mTERF
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1508
AccI GTMKAC 2 cut(s) 1266, 1629
AciI CCGC 4 cut(s) 998, 1526, 1576, 1633
AclWI GGATC 2 cut(s) 1378, 1737
AcsI RAATTY 4 cut(s) 413, 907, 992, 1354
AcuI CTGAAG 3 cut(s) 1227, 1556, 1754
AfiI CCNNNNNNNGG 3 cut(s) 198, 222, 1510
AgeI ACCGGT 1 cut(s) 149
AhdI GACNNNNNGTC 1 cut(s) 1273
AjiI CACGTC 1 cut(s) 33
AjnI CCWGG 1 cut(s) 1106
AjuI GAANNNNNNNTTGG 2 cut(s) 936, 968
AloI GAACNNNNNNTCC 2 cut(s) 1216, 1248
Alw21I GWGCWC 1 cut(s) 812
Alw26I GTCTC 1 cut(s) 1334
AlwI GGATC 2 cut(s) 1378, 1737
AlwNI CAGNNNCTG 1 cut(s) 885
Ama87I CYCGRG 2 cut(s) 1176, 1617
ApeKI GCWGC 1 cut(s) 1741
ApoI RAATTY 4 cut(s) 413, 907, 992, 1354
ArsI GACNNNNNNTTYG 2 cut(s) 1661, 1693
AsiGI ACCGGT 1 cut(s) 149
Asp700I GAANNNNTTC 3 cut(s) 569, 723, 1355
AspS9I GGNCC 1 cut(s) 797
AsuC2I CCSGG 1 cut(s) 607
AsuHPI GGTGA 4 cut(s) 139, 392, 1453, 1507
AsuII TTCGAA 1 cut(s) 1025
AvaI CYCGRG 2 cut(s) 1176, 1617
AvaII GGWCC 1 cut(s) 797
BaeGI GKGCMC 1 cut(s) 121
BanII GRGCYC 1 cut(s) 812
BbsI GAAGAC 2 cut(s) 478, 1295
Bbv12I GWGCWC 1 cut(s) 812
BbvCI CCTCAGC 1 cut(s) 234
BbvI GCAGC 1 cut(s) 1728
BccI CCATC 4 cut(s) 528, 694, 1060, 1703
BceAI ACGGC 1 cut(s) 1231
BcgI CGANNNNNNTGC 2 cut(s) 1639, 1673
BciT130I CCWGG 1 cut(s) 1108
BciVI GTATCC 1 cut(s) 1307
BcnI CCSGG 1 cut(s) 607
BcoDI GTCTC 1 cut(s) 1334
BfaI CTAG 8 cut(s) 21, 65, 129, 267, 582, 932, 963, 1484
BfuI GTATCC 1 cut(s) 1307
BglII AGATCT 2 cut(s) 131, 567
BisI GCNGC 1 cut(s) 1742
BlsI GCNGC 1 cut(s) 1743
Bme1390I CCNGG 2 cut(s) 607, 1108
Bme18I GGWCC 1 cut(s) 797
BmeRI GACNNNNNGTC 1 cut(s) 1273
BmeT110I CYCGRG 2 cut(s) 1176, 1617
BmgBI CACGTC 1 cut(s) 33
BmgT120I GGNCC 1 cut(s) 797
BmiI GGNNCC 2 cut(s) 471, 798
BmrFI CCNGG 2 cut(s) 607, 1108
BmrI ACTGGG 2 cut(s) 108, 444
BmsI GCATC 3 cut(s) 826, 968, 1753
BmuI ACTGGG 2 cut(s) 108, 444
BpiI GAAGAC 2 cut(s) 478, 1295
BpmI CTGGAG 1 cut(s) 533
Bpu10I CCTNAGC 1 cut(s) 234
Bpu14I TTCGAA 1 cut(s) 1025
BpuEI CTTGAG 1 cut(s) 449
BpuMI CCSGG 1 cut(s) 607
BsaJI CCNNGG 4 cut(s) 606, 1309, 1360, 1618
BsaWI WCCGGW 1 cut(s) 149
Bsc4I CCNNNNNNNGG 3 cut(s) 198, 222, 1510
Bse118I RCCGGY 1 cut(s) 149
Bse1I ACTGG 4 cut(s) 103, 450, 726, 1140
Bse3DI GCAATG 3 cut(s) 249, 1353, 1602
BseBI CCWGG 1 cut(s) 1108
BseDI CCNNGG 4 cut(s) 606, 1309, 1360, 1618
BseGI GGATG 3 cut(s) 499, 1584, 1702
BseLI CCNNNNNNNGG 3 cut(s) 198, 222, 1510
BseMI GCAATG 3 cut(s) 249, 1353, 1602
BseMII CTCAG 4 cut(s) 225, 1307, 1341, 1600
BseNI ACTGG 4 cut(s) 103, 450, 726, 1140
BseRI GAGGAG 1 cut(s) 98
BseSI GKGCMC 1 cut(s) 121
BseXI GCAGC 1 cut(s) 1728
BshTI ACCGGT 1 cut(s) 149
BsiHKAI GWGCWC 1 cut(s) 812
BsiHKCI CYCGRG 2 cut(s) 1176, 1617
BsiSI CCGG 2 cut(s) 150, 606
BslFI GGGAC 1 cut(s) 810
BslI CCNNNNNNNGG 3 cut(s) 198, 222, 1510
BsmAI GTCTC 1 cut(s) 1334
BsmFI GGGAC 1 cut(s) 810
BsoBI CYCGRG 2 cut(s) 1176, 1617
Bsp119I TTCGAA 1 cut(s) 1025
Bsp1286I GDGCHC 2 cut(s) 121, 812
Bsp143I GATC 6 cut(s) 131, 567, 1059, 1370, 1638, 1729
BspACI CCGC 4 cut(s) 998, 1526, 1576, 1633
BspCNI CTCAG 4 cut(s) 226, 1306, 1340, 1599
BspLI GGNNCC 2 cut(s) 471, 798
BspPI GGATC 2 cut(s) 1378, 1737
BspT104I TTCGAA 1 cut(s) 1025
BsrDI GCAATG 3 cut(s) 249, 1353, 1602
BsrFI RCCGGY 1 cut(s) 149
BsrI ACTGG 4 cut(s) 103, 450, 726, 1140
BssAI RCCGGY 1 cut(s) 149
BssECI CCNNGG 4 cut(s) 606, 1309, 1360, 1618
BssMI GATC 6 cut(s) 131, 567, 1059, 1370, 1638, 1729
Bst2UI CCWGG 1 cut(s) 1108
Bst4CI ACNGT 6 cut(s) 145, 279, 311, 396, 887, 1700
Bst6I CTCTTC 3 cut(s) 179, 1203, 1575
BstBI TTCGAA 1 cut(s) 1025
BstC8I GCNNGC 4 cut(s) 833, 1148, 1659, 1663
BstDSI CCRYGG 1 cut(s) 1360
BstENI CCTNNNNNAGG 1 cut(s) 1508
BstF5I GGATG 3 cut(s) 499, 1584, 1702
BstKTI GATC 6 cut(s) 134, 570, 1062, 1373, 1641, 1732
BstMAI GTCTC 1 cut(s) 1334
BstMBI GATC 6 cut(s) 131, 567, 1059, 1370, 1638, 1729
BstMWI GCNNNNNNNGC 2 cut(s) 239, 1582
BstNI CCWGG 1 cut(s) 1108
BstNSI RCATGY 1 cut(s) 1452
BstSCI CCNGG 2 cut(s) 605, 1106
BstSLI GKGCMC 1 cut(s) 121
BstV1I GCAGC 1 cut(s) 1728
BstV2I GAAGAC 2 cut(s) 478, 1295
BstX2I RGATCY 3 cut(s) 131, 567, 1729
BstYI RGATCY 3 cut(s) 131, 567, 1729
BsuI GTATCC 1 cut(s) 1307
BtgI CCRYGG 1 cut(s) 1360
BtrI CACGTC 1 cut(s) 33
BtsCI GGATG 3 cut(s) 499, 1584, 1702
BtsI GCAGTG 2 cut(s) 172, 1043
BtsIMutI CAGTG 3 cut(s) 172, 457, 1043
Cac8I GCNNGC 4 cut(s) 833, 1148, 1659, 1663
CaiI CAGNNNCTG 1 cut(s) 885
Cfr10I RCCGGY 1 cut(s) 149
Cfr13I GGNCC 1 cut(s) 797
CspAI ACCGGT 1 cut(s) 149
CviAII CATG 4 cut(s) 524, 1122, 1449, 1554
DpnI GATC 6 cut(s) 133, 569, 1061, 1372, 1640, 1731
DpnII GATC 6 cut(s) 131, 567, 1059, 1370, 1638, 1729
DraI TTTAAA 2 cut(s) 205, 1560
DriI GACNNNNNGTC 1 cut(s) 1273
Eam1104I CTCTTC 3 cut(s) 179, 1203, 1575
Eam1105I GACNNNNNGTC 1 cut(s) 1273
EarI CTCTTC 3 cut(s) 179, 1203, 1575
Ecl136II GAGCTC 1 cut(s) 810
Eco24I GRGCYC 1 cut(s) 812
Eco32I GATATC 3 cut(s) 367, 389, 1480
Eco47I GGWCC 1 cut(s) 797
Eco53kI GAGCTC 1 cut(s) 810
Eco57I CTGAAG 3 cut(s) 1227, 1556, 1754
Eco88I CYCGRG 2 cut(s) 1176, 1617
EcoICRI GAGCTC 1 cut(s) 810
EcoNI CCTNNNNNAGG 1 cut(s) 1508
EcoO109I RGGNCCY 1 cut(s) 797
EcoRI GAATTC 2 cut(s) 413, 907
EcoRII CCWGG 1 cut(s) 1106
EcoRV GATATC 3 cut(s) 367, 389, 1480
EcoT38I GRGCYC 1 cut(s) 812
FaeI CATG 4 cut(s) 527, 1125, 1452, 1557
FalI AAGNNNNNCTT 2 cut(s) 473, 505
FaqI GGGAC 1 cut(s) 810
FatI CATG 4 cut(s) 523, 1121, 1448, 1553
FauI CCCGC 1 cut(s) 1005
FblI GTMKAC 2 cut(s) 1266, 1629
Fnu4HI GCNGC 1 cut(s) 1742
FokI GGATG 3 cut(s) 506, 1591, 1689
FriOI GRGCYC 1 cut(s) 812
Fsp4HI GCNGC 1 cut(s) 1742
FspBI CTAG 8 cut(s) 21, 65, 129, 267, 582, 932, 963, 1484
GluI GCNGC 1 cut(s) 1742
GsuI CTGGAG 1 cut(s) 533
HapII CCGG 2 cut(s) 150, 606
Hin1II CATG 4 cut(s) 527, 1125, 1452, 1557
HincII GTYRAC 1 cut(s) 547
HindII GTYRAC 1 cut(s) 547
HindIII AAGCTT 3 cut(s) 671, 829, 950
HpaII CCGG 2 cut(s) 150, 606
HphI GGTGA 4 cut(s) 139, 392, 1453, 1507
Hpy166II GTNNAC 8 cut(s) 275, 547, 971, 1267, 1498, 1566, 1630, 1696
Hpy8I GTNNAC 8 cut(s) 275, 547, 971, 1267, 1498, 1566, 1630, 1696
HpyAV CCTTC 3 cut(s) 494, 1156, 1560
HpyCH4III ACNGT 6 cut(s) 145, 279, 311, 396, 887, 1700
HpyCH4IV ACGT 3 cut(s) 32, 740, 1263
HpyCH4V TGCA 6 cut(s) 165, 290, 745, 817, 1595, 1744
HpyF10VI GCNNNNNNNGC 2 cut(s) 239, 1582
HpySE526I ACGT 3 cut(s) 32, 740, 1263
Hsp92II CATG 4 cut(s) 527, 1125, 1452, 1557
Kzo9I GATC 6 cut(s) 131, 567, 1059, 1370, 1638, 1729
LmnI GCTCC 1 cut(s) 807
Lsp1109I GCAGC 1 cut(s) 1728
LweI GCATC 3 cut(s) 826, 968, 1753
MaeI CTAG 8 cut(s) 21, 65, 129, 267, 582, 932, 963, 1484
MaeII ACGT 3 cut(s) 32, 740, 1263
MaeIII GTNAC 4 cut(s) 145, 152, 352, 1248
MalI GATC 6 cut(s) 133, 569, 1061, 1372, 1640, 1731
MboI GATC 6 cut(s) 131, 567, 1059, 1370, 1638, 1729
MflI RGATCY 3 cut(s) 131, 567, 1729
MhlI GDGCHC 2 cut(s) 121, 812
MluCI AATT 9 cut(s) 74, 87, 227, 315, 413, 907, 992, 1354, 1514
MlyI GAGTC 3 cut(s) 702, 1283, 1285
MmeI TCCRAC 1 cut(s) 228
MroXI GAANNNNTTC 3 cut(s) 569, 723, 1355
MseI TTAA 8 cut(s) 77, 204, 627, 827, 875, 1130, 1392, 1559
MslI CAYNNNNRTG 1 cut(s) 1707
MspA1I CMGCKG 2 cut(s) 1000, 1576
MspI CCGG 2 cut(s) 150, 606
MspR9I CCNGG 2 cut(s) 607, 1108
MvaI CCWGG 1 cut(s) 1108
MwoI GCNNNNNNNGC 2 cut(s) 239, 1582
NciI CCSGG 1 cut(s) 607
NdeII GATC 6 cut(s) 131, 567, 1059, 1370, 1638, 1729
NlaIII CATG 4 cut(s) 527, 1125, 1452, 1557
NlaIV GGNNCC 2 cut(s) 471, 798
NmuCI GTSAC 1 cut(s) 145
NspI RCATGY 1 cut(s) 1452
NspV TTCGAA 1 cut(s) 1025
PdmI GAANNNNTTC 3 cut(s) 569, 723, 1355
PfeI GAWTC 7 cut(s) 27, 445, 928, 1003, 1027, 1081, 1487
PinAI ACCGGT 1 cut(s) 149
PkrI GCNGC 1 cut(s) 1743
PleI GAGTC 3 cut(s) 701, 1282, 1285
PpsI GAGTC 3 cut(s) 701, 1282, 1285
PpuMI RGGWCCY 1 cut(s) 797
PsiI TTATAA 1 cut(s) 1508
Psp124BI GAGCTC 1 cut(s) 812
Psp5II RGGWCCY 1 cut(s) 797
Psp6I CCWGG 1 cut(s) 1106
PspGI CCWGG 1 cut(s) 1106
PspN4I GGNNCC 2 cut(s) 471, 798
PspPI GGNCC 1 cut(s) 797
PspPPI RGGWCCY 1 cut(s) 797
PstNI CAGNNNCTG 1 cut(s) 885
PsuI RGATCY 3 cut(s) 131, 567, 1729
RseI CAYNNNNRTG 1 cut(s) 1707
SacI GAGCTC 1 cut(s) 812
SaqAI TTAA 8 cut(s) 77, 204, 627, 827, 875, 1130, 1392, 1559
SatI GCNGC 1 cut(s) 1742
Sau3AI GATC 6 cut(s) 131, 567, 1059, 1370, 1638, 1729
Sau96I GGNCC 1 cut(s) 797
SchI GAGTC 3 cut(s) 702, 1283, 1285
ScrFI CCNGG 2 cut(s) 607, 1108
SduI GDGCHC 2 cut(s) 121, 812
SfaNI GCATC 3 cut(s) 826, 968, 1753
SfuI TTCGAA 1 cut(s) 1025
SinI GGWCC 1 cut(s) 797
SmiMI CAYNNNNRTG 1 cut(s) 1707
SmlI CTYRAG 1 cut(s) 428
SmoI CTYRAG 1 cut(s) 428
Sse9I AATT 9 cut(s) 74, 87, 227, 315, 413, 907, 992, 1354, 1514
SsiI CCGC 4 cut(s) 998, 1526, 1576, 1633
SspI AATATT 2 cut(s) 715, 1677
SspMI CTAG 8 cut(s) 21, 65, 129, 267, 582, 932, 963, 1484
SstI GAGCTC 1 cut(s) 812
StyD4I CCNGG 2 cut(s) 605, 1106
TaaI ACNGT 6 cut(s) 145, 279, 311, 396, 887, 1700
TaiI ACGT 3 cut(s) 35, 743, 1266
TaqI TCGA 8 cut(s) 176, 385, 417, 765, 1025, 1062, 1277, 1532
TasI AATT 9 cut(s) 74, 87, 227, 315, 413, 907, 992, 1354, 1514
TfiI GAWTC 7 cut(s) 27, 445, 928, 1003, 1027, 1081, 1487
Tru1I TTAA 8 cut(s) 77, 204, 627, 827, 875, 1130, 1392, 1559
Tru9I TTAA 8 cut(s) 77, 204, 627, 827, 875, 1130, 1392, 1559
TscAI CASTG 3 cut(s) 172, 457, 1043
TseFI GTSAC 1 cut(s) 145
TseI GCWGC 1 cut(s) 1741
Tsp45I GTSAC 1 cut(s) 145
TspGWI ACGGA 2 cut(s) 1085, 1349
TspRI CASTG 3 cut(s) 172, 457, 1043
VpaK11BI GGWCC 1 cut(s) 797
XagI CCTNNNNNAGG 1 cut(s) 1508
XapI RAATTY 4 cut(s) 413, 907, 992, 1354
XbaI TCTAGA 2 cut(s) 64, 962
XceI RCATGY 1 cut(s) 1452
XmiI GTMKAC 2 cut(s) 1266, 1629
XmnI GAANNNNTTC 3 cut(s) 569, 723, 1355
XspI CTAG 8 cut(s) 21, 65, 129, 267, 582, 932, 963, 1484
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.