RchiOBHm_Chr3g0480081
ERF Family

mTERF

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0001228
Physical Location & Seq
Forward (+)
25889530 .. 25893171
3642 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ44511

Sequence Viewer

Length: 1770 bp
ATGACCCATTTGCATAGCCTCAGAAATGCATCTATTCTCAAATGGGTTTCTTCAAATATTGCTCAAAACCACCTTAGATCATCAAGAACCCCACTTCAGCCAATTGGGTCTTTCCCCAATTCTCATGCCATCAGGCTTTACGGTACCAAAACAGCTCTTGAAGCTGAAAACCCTGAAAACTTGGATATAACTTCGACTTCTAGTGGAAAAAATGGAGGGGGGATTTCTAGAGTTATTCGAAAAGAAGCCCAGGCTGCATTGTTGGAGTATTTGCACTGTACTAGGGGCTTGCAGTTCATGGATGCAGAGAATATGAGTAAAAACTCCCCGCAGTTTCTCAACAAGCTCTTAACAAGTGTTGATGGTGAAATTGATAATGAAATTGGGGGCTTGATTTCCCGGTATTTGAGGTACCACCCCATTAATGAATTTGAGCCTTTCTTTGAGAGCTTGGGATTAAAACCTTCAGAGTATATCCCCCGTCTTCCTCGGAATTTGATGTTCTTGACCGATGATGGTTTGTTGCTTCACAATTATACTGTTTTGTGTAGTTATGGGGTTTCACGTAGCAAGATAGGAAAGATTTATAAAGAAGCAACACAAGTGTTTCGATATGATTTTGAGGTGTTGCTATCGAAACTTCAGGCTTATGAAGAACTAGGTCTCAGCCAATTTGCTTTAGTTAAGTTTATTGTTTGCAGCCCTTATATTTTAGTTGGGGATGTAAATGTGCCATTTGTTAAGGTACTAGAAAAGTTGAAGAGTTTGGGGTTTGAGACCTATTGGATTGAAAGGAATTTATCAGAAGAGAATATTTATAGTTGGAGCCGGATGCTTGAAGTGCTAAGGTTGTTTAATGAGATGGGTTGCAGCAACGTGCAGTTGGTTGGATTACTTGGCCAGCATCCGGATATTTTATTTGAGAGTTCAGGAGAAACGACACTGCTCTTAATTGGGTTCTTACTGAAGTTTGGATCCACAAGGAGCCAAATATGTTCAATGTTTCTGCAGTTTCCACAAATTCAGATTATGCAATTTGTTCTGAATTTGAGGAAATGTCTTTTGGTCCTAAATGAGATTGAGATGGAGGTTGCAGAGATTCAGAAGATTGTTTGTTCACACCCCCTGCTACTGGGTTCGTGTGCTCTGAAAAGCACTAACAGCTTACTTTCTTACTTGAAGATTGGGAAGAAGCGTCTGTCTAGGTACATACAGGAGAACCCTGAAGCATTAAAGAAATGGGTTCTAGGTAGAAGAGTTGAGCCACTTCCAGACTCGGAAGAGGACTCAAAGGGAAAGAGAATTAAGTTCTTGTTAGACATAGGATTTGTAGAGAACTCGAACAAAATGAAAGAAGCACTAAAGCTATTTCGAGGCAAGGGAGGGGAACTTCAAGACAGATTTGATTGTATAGTGAATGCTGGTTTAAATCACCAGGATGTCTGTAAAATGATTAAAGTATCCCCTCAAATTCTGAACCAGAAAAGGGATGTGTTACAAATGAAGATTGATGTTCTTGTAAATCATCTGGGTTATCCTGTATCATCTTTGGTGAACTTCCCATCATATCTATCCTATACAACTCAAAGGGTCAAGCTCAGAGTATTCATGTACAATTGGCTCACTGGTCAAGGAACAATAGCCCCTACACTTGCCTTGAGCACTGTCGTCGCAATGGCGGAGAAAACATTTATATCGCAATATGTAAATCATCATCCTTGTGGTCCTCAAGTTTGGCAGGAATTGAAGGGTAAAATGTATTCTTTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
mTERF

Protein Analysis

589

Amino Acids

66.94

Weight (kDa)

8.94

Isoelectric Point (pI)

41.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
mTERF PF02536 282 - 445 1.2e-08 mTERF
mTERF PF02536 456 - 564 3.3e-13 mTERF
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 588, 1768
Acc65I GGTACC 2 cut(s) 143, 411
AccB1I GGYRCC 2 cut(s) 143, 411
AccIII TCCGGA 1 cut(s) 907
AciI CCGC 2 cut(s) 329, 1679
AclWI GGATC 2 cut(s) 969, 982
AcoI YGGCCR 1 cut(s) 898
AcsI RAATTY 6 cut(s) 428, 493, 796, 1020, 1045, 1470
AcuI CTGAAG 5 cut(s) 80, 450, 626, 986, 1245
AfaI GTAC 6 cut(s) 145, 280, 413, 747, 1208, 1613
AfiI CCNNNNNNNGG 3 cut(s) 907, 1132, 1486
AgsI TTSAA 9 cut(s) 54, 161, 760, 791, 839, 999, 1180, 1394, 1747
AjnI CCWGG 2 cut(s) 249, 1434
AjuI GAANNNNNNNTTGG 2 cut(s) 1046, 1078
AluBI AGCT 7 cut(s) 155, 164, 346, 450, 1164, 1366, 1597
AluI AGCT 7 cut(s) 155, 164, 346, 450, 1164, 1366, 1597
Alw21I GWGCWC 2 cut(s) 1147, 1664
Alw26I GTCTC 2 cut(s) 668, 770
AlwI GGATC 2 cut(s) 969, 982
Aor13HI TCCGGA 1 cut(s) 907
AoxI GGCC 1 cut(s) 898
ApeKI GCWGC 3 cut(s) 254, 699, 870
ApoI RAATTY 6 cut(s) 428, 493, 796, 1020, 1045, 1470
ArsI GACNNNNNNTTYG 2 cut(s) 1310, 1342
AseI ATTAAT 1 cut(s) 423
Asp718I GGTACC 2 cut(s) 143, 411
AspS9I GGNCC 2 cut(s) 1066, 1724
AsuC2I CCSGG 1 cut(s) 400
AsuHPI GGTGA 3 cut(s) 377, 1424, 1564
AsuII TTCGAA 1 cut(s) 238
AvaII GGWCC 2 cut(s) 1066, 1724
BalI TGGCCA 1 cut(s) 900
BamHI GGATCC 1 cut(s) 974
BanI GGYRCC 2 cut(s) 143, 411
BbsI GAAGAC 1 cut(s) 476
Bbv12I GWGCWC 2 cut(s) 1147, 1664
BbvI GCAGC 3 cut(s) 241, 711, 882
BccI CCATC 6 cut(s) 137, 356, 509, 856, 1078, 1570
BcgI CGANNNNNNTGC 2 cut(s) 1651, 1685
BciT130I CCWGG 2 cut(s) 251, 1436
BciVI GTATCC 1 cut(s) 1471
BcnI CCSGG 1 cut(s) 400
BcoDI GTCTC 2 cut(s) 668, 770
BfaI CTAG 7 cut(s) 201, 228, 282, 659, 749, 1203, 1247
BfmI CTRYAG 1 cut(s) 1007
BfuI GTATCC 1 cut(s) 1471
BisI GCNGC 3 cut(s) 255, 700, 871
BlsI GCNGC 3 cut(s) 256, 701, 872
Bme1390I CCNGG 3 cut(s) 251, 400, 1436
Bme18I GGWCC 2 cut(s) 1066, 1724
BmgT120I GGNCC 2 cut(s) 1066, 1724
BmiI GGNNCC 5 cut(s) 145, 413, 827, 976, 986
BmrFI CCNGG 3 cut(s) 251, 400, 1436
BmrI ACTGGG 1 cut(s) 1142
BmsI GCATC 4 cut(s) 38, 292, 822, 913
BmuI ACTGGG 1 cut(s) 1142
BpiI GAAGAC 1 cut(s) 476
Bpu10I CCTNAGC 1 cut(s) 845
Bpu14I TTCGAA 1 cut(s) 238
BpuEI CTTGAG 2 cut(s) 1678, 1713
BpuMI CCSGG 1 cut(s) 400
BsaAI YACGTR 1 cut(s) 566
BsaI GGTCTC 2 cut(s) 668, 770
BsaJI CCNNGG 2 cut(s) 249, 488
BsaWI WCCGGW 1 cut(s) 907
Bsc4I CCNNNNNNNGG 3 cut(s) 907, 1132, 1486
Bse1I ACTGG 2 cut(s) 1137, 1630
Bse3DI GCAATG 1 cut(s) 1680
BseAI TCCGGA 1 cut(s) 907
BseBI CCWGG 2 cut(s) 251, 1436
BseDI CCNNGG 2 cut(s) 249, 488
BseGI GGATG 7 cut(s) 307, 727, 837, 904, 1444, 1495, 1714
BseLI CCNNNNNNNGG 3 cut(s) 907, 1132, 1486
BseMI GCAATG 1 cut(s) 1680
BseMII CTCAG 3 cut(s) 34, 679, 1612
BseNI ACTGG 2 cut(s) 1137, 1630
BseXI GCAGC 3 cut(s) 241, 711, 882
BsgI GTGCAG 1 cut(s) 899
BshFI GGCC 1 cut(s) 900
BshNI GGYRCC 2 cut(s) 143, 411
BsiHKAI GWGCWC 2 cut(s) 1147, 1664
BsiSI CCGG 3 cut(s) 400, 829, 908
BslI CCNNNNNNNGG 3 cut(s) 907, 1132, 1486
BsmAI GTCTC 2 cut(s) 668, 770
BsmI GAATGC 1 cut(s) 1423
BsnI GGCC 1 cut(s) 900
Bso31I GGTCTC 2 cut(s) 668, 770
Bsp119I TTCGAA 1 cut(s) 238
Bsp1286I GDGCHC 2 cut(s) 1147, 1664
Bsp13I TCCGGA 1 cut(s) 907
Bsp1407I TGTACA 1 cut(s) 1611
Bsp143I GATC 2 cut(s) 77, 974
BspACI CCGC 2 cut(s) 329, 1679
BspANI GGCC 1 cut(s) 900
BspCNI CTCAG 3 cut(s) 33, 678, 1611
BspEI TCCGGA 1 cut(s) 907
BspLI GGNNCC 5 cut(s) 145, 413, 827, 976, 986
BspMAI CTGCAG 1 cut(s) 1011
BspPI GGATC 2 cut(s) 969, 982
BspT104I TTCGAA 1 cut(s) 238
BspT107I GGYRCC 2 cut(s) 143, 411
BspTNI GGTCTC 2 cut(s) 668, 770
BsrDI GCAATG 1 cut(s) 1680
BsrGI TGTACA 1 cut(s) 1611
BsrI ACTGG 2 cut(s) 1137, 1630
BssECI CCNNGG 2 cut(s) 249, 488
BssMI GATC 2 cut(s) 77, 974
Bst2UI CCWGG 2 cut(s) 251, 1436
Bst4CI ACNGT 4 cut(s) 143, 278, 541, 1666
Bst6I CTCTTC 4 cut(s) 755, 801, 1249, 1275
BstAUI TGTACA 1 cut(s) 1611
BstBAI YACGTR 1 cut(s) 566
BstBI TTCGAA 1 cut(s) 238
BstC8I GCNNGC 2 cut(s) 290, 902
BstDEI CTNAG 5 cut(s) 20, 74, 665, 845, 1598
BstF5I GGATG 7 cut(s) 307, 727, 837, 904, 1444, 1495, 1714
BstKTI GATC 2 cut(s) 80, 977
BstMAI GTCTC 2 cut(s) 668, 770
BstMBI GATC 2 cut(s) 77, 974
BstMWI GCNNNNNNNGC 4 cut(s) 161, 254, 841, 1161
BstNI CCWGG 2 cut(s) 251, 1436
BstSCI CCNGG 3 cut(s) 249, 398, 1434
BstSFI CTRYAG 1 cut(s) 1007
BstV1I GCAGC 3 cut(s) 241, 711, 882
BstV2I GAAGAC 1 cut(s) 476
BstX2I RGATCY 1 cut(s) 974
BstYI RGATCY 1 cut(s) 974
BsuI GTATCC 1 cut(s) 1471
BsuRI GGCC 1 cut(s) 900
BtsCI GGATG 7 cut(s) 307, 727, 837, 904, 1444, 1495, 1714
BtsI GCAGTG 1 cut(s) 941
BtsIMutI CAGTG 4 cut(s) 274, 941, 1623, 1662
Cac8I GCNNGC 2 cut(s) 290, 902
Cfr13I GGNCC 2 cut(s) 1066, 1724
CseI GACGC 1 cut(s) 1184
Csp6I GTAC 6 cut(s) 144, 279, 412, 746, 1207, 1612
CviAII CATG 3 cut(s) 125, 298, 1609
CviQI GTAC 6 cut(s) 144, 279, 412, 746, 1207, 1612
DdeI CTNAG 5 cut(s) 20, 74, 665, 845, 1598
DpnI GATC 2 cut(s) 79, 976
DpnII GATC 2 cut(s) 77, 974
DraI TTTAAA 1 cut(s) 1428
EaeI YGGCCR 1 cut(s) 898
Eam1104I CTCTTC 4 cut(s) 755, 801, 1249, 1275
EarI CTCTTC 4 cut(s) 755, 801, 1249, 1275
EciI GGCGGA 1 cut(s) 1694
Eco31I GGTCTC 2 cut(s) 668, 770
Eco47I GGWCC 2 cut(s) 1066, 1724
Eco57I CTGAAG 5 cut(s) 80, 450, 626, 986, 1245
EcoRII CCWGG 2 cut(s) 249, 1434
EcoT22I ATGCAT 1 cut(s) 31
FaeI CATG 3 cut(s) 128, 301, 1612
FatI CATG 3 cut(s) 124, 297, 1608
FauI CCCGC 1 cut(s) 336
Fnu4HI GCNGC 3 cut(s) 255, 700, 871
FokI GGATG 7 cut(s) 314, 734, 844, 891, 1451, 1502, 1701
Fsp4HI GCNGC 3 cut(s) 255, 700, 871
FspBI CTAG 7 cut(s) 201, 228, 282, 659, 749, 1203, 1247
GluI GCNGC 3 cut(s) 255, 700, 871
HaeIII GGCC 1 cut(s) 900
HapII CCGG 3 cut(s) 400, 829, 908
HgaI GACGC 1 cut(s) 1184
Hin1II CATG 3 cut(s) 128, 301, 1612
HinfI GANTC 3 cut(s) 1099, 1274, 1286
HpaII CCGG 3 cut(s) 400, 829, 908
HphI GGTGA 3 cut(s) 377, 1424, 1564
Hpy166II GTNNAC 2 cut(s) 1118, 1555
Hpy188III TCNNGA 8 cut(s) 84, 158, 228, 505, 908, 930, 1271, 1394
Hpy8I GTNNAC 2 cut(s) 1118, 1555
Hpy99I CGWCG 1 cut(s) 1673
HpyAV CCTTC 2 cut(s) 474, 1741
HpyCH4III ACNGT 4 cut(s) 143, 278, 541, 1666
HpyCH4IV ACGT 2 cut(s) 565, 876
HpyF10VI GCNNNNNNNGC 4 cut(s) 161, 254, 841, 1161
HpyF3I CTNAG 5 cut(s) 20, 74, 665, 845, 1598
HpySE526I ACGT 2 cut(s) 565, 876
Hsp92II CATG 3 cut(s) 128, 301, 1612
Kpn2I TCCGGA 1 cut(s) 907
KpnI GGTACC 2 cut(s) 147, 415
Kzo9I GATC 2 cut(s) 77, 974
LmnI GCTCC 2 cut(s) 825, 984
Lsp1109I GCAGC 3 cut(s) 241, 711, 882
LweI GCATC 4 cut(s) 38, 292, 822, 913
MaeI CTAG 7 cut(s) 201, 228, 282, 659, 749, 1203, 1247
MaeII ACGT 2 cut(s) 565, 876
MaeIII GTNAC 1 cut(s) 1494
MalI GATC 2 cut(s) 79, 976
MboI GATC 2 cut(s) 77, 974
MfeI CAATTG 2 cut(s) 102, 1615
MflI RGATCY 1 cut(s) 974
MhlI GDGCHC 2 cut(s) 1147, 1664
MlsI TGGCCA 1 cut(s) 900
MluNI TGGCCA 1 cut(s) 900
MlyI GAGTC 2 cut(s) 1268, 1280
MmeI TCCRAC 3 cut(s) 243, 803, 868
Mox20I TGGCCA 1 cut(s) 900
Mph1103I ATGCAT 1 cut(s) 31
MroI TCCGGA 1 cut(s) 907
MscI TGGCCA 1 cut(s) 900
MslI CAYNNNNRTG 2 cut(s) 1437, 1719
Msp20I TGGCCA 1 cut(s) 900
MspI CCGG 3 cut(s) 400, 829, 908
MspR9I CCNGG 3 cut(s) 251, 400, 1436
MunI CAATTG 2 cut(s) 102, 1615
Mva1269I GAATGC 1 cut(s) 1423
MvaI CCWGG 2 cut(s) 251, 1436
MwoI GCNNNNNNNGC 4 cut(s) 161, 254, 841, 1161
NciI CCSGG 1 cut(s) 400
NdeII GATC 2 cut(s) 77, 974
NlaIII CATG 3 cut(s) 128, 301, 1612
NlaIV GGNNCC 5 cut(s) 145, 413, 827, 976, 986
NsiI ATGCAT 1 cut(s) 31
NspV TTCGAA 1 cut(s) 238
PctI GAATGC 1 cut(s) 1423
PfeI GAWTC 1 cut(s) 1099
PkrI GCNGC 3 cut(s) 256, 701, 872
PleI GAGTC 2 cut(s) 1268, 1280
PpsI GAGTC 2 cut(s) 1268, 1280
Ppu21I YACGTR 1 cut(s) 566
PshBI ATTAAT 1 cut(s) 423
PsiI TTATAA 2 cut(s) 588, 1768
Psp6I CCWGG 2 cut(s) 249, 1434
PspGI CCWGG 2 cut(s) 249, 1434
PspN4I GGNNCC 5 cut(s) 145, 413, 827, 976, 986
PspPI GGNCC 2 cut(s) 1066, 1724
PstI CTGCAG 1 cut(s) 1011
PsuI RGATCY 1 cut(s) 974
RsaI GTAC 6 cut(s) 145, 280, 413, 747, 1208, 1613
RsaNI GTAC 6 cut(s) 144, 279, 412, 746, 1207, 1612
RseI CAYNNNNRTG 2 cut(s) 1437, 1719
SatI GCNGC 3 cut(s) 255, 700, 871
Sau3AI GATC 2 cut(s) 77, 974
Sau96I GGNCC 2 cut(s) 1066, 1724
SchI GAGTC 2 cut(s) 1268, 1280
ScrFI CCNGG 3 cut(s) 251, 400, 1436
SduI GDGCHC 2 cut(s) 1147, 1664
SfaNI GCATC 4 cut(s) 38, 292, 822, 913
SfcI CTRYAG 1 cut(s) 1007
SfuI TTCGAA 1 cut(s) 238
SinI GGWCC 2 cut(s) 1066, 1724
SmiMI CAYNNNNRTG 2 cut(s) 1437, 1719
SmlI CTYRAG 2 cut(s) 1657, 1728
SmoI CTYRAG 2 cut(s) 1657, 1728
SsiI CCGC 2 cut(s) 329, 1679
SspI AATATT 2 cut(s) 58, 814
SspMI CTAG 7 cut(s) 201, 228, 282, 659, 749, 1203, 1247
StyD4I CCNGG 3 cut(s) 249, 398, 1434
TaaI ACNGT 4 cut(s) 143, 278, 541, 1666
TaiI ACGT 2 cut(s) 568, 879
TaqI TCGA 6 cut(s) 194, 238, 610, 635, 1340, 1372
TaqII GACCGA 1 cut(s) 524
TatI WGTACW 2 cut(s) 278, 1611
TfiI GAWTC 1 cut(s) 1099
TscAI CASTG 4 cut(s) 281, 948, 1630, 1669
TseI GCWGC 3 cut(s) 254, 699, 870
TspDTI ATGAA 7 cut(s) 286, 393, 441, 666, 1364, 1517, 1597
TspRI CASTG 4 cut(s) 281, 948, 1630, 1669
VpaK11BI GGWCC 2 cut(s) 1066, 1724
VspI ATTAAT 1 cut(s) 423
XapI RAATTY 6 cut(s) 428, 493, 796, 1020, 1045, 1470
XbaI TCTAGA 1 cut(s) 227
XspI CTAG 7 cut(s) 201, 228, 282, 659, 749, 1203, 1247
Zsp2I ATGCAT 1 cut(s) 31
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.