Rh3CG261800
ERF Family

mTERF

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0001228
Physical Location & Seq
Forward (+)
25589438 .. 25590133
696 bp
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UTR
Exon/CDS
Intron
Rh3CG261800.1

Sequence Viewer

Length: 696 bp
ATGAAGGCTGCAGAGATTGGGAAGATTGTTCATTCTCACCCCCTGCTACTGGGTTCGTGCTCTTTGAAAAAAACTAGCAGCTTACTTTGTACTTTGCATGTTGGGAAGAAACGATTGTCTCAGTACATCCAGGAGAACCCACAAGAATTAAAGAATTGGGTTTGGGATAGAAAAATTGAGTCATTTCCAGATTCCGGAGATGAAGTTAGGTCAAAGGCTGAAAGGACTAAGTTCTTGCTAGACATAGGATTTGTAGAAAACTCCAGCAAAATGAAAGCAGCGCTGAAGGCATGTCGAGGCAATGGAGAGGAGCTTCAGGAAAGATTTGATTGTATAGTAAAAGCTGGTTTGGATCGGAAGGATGTCTGTGAACTGATTCAATCATGCCCTCAAAATCCTAACCAGACAACAGATGTGATTGAAATGAAGATCGACTGTCTTGTAAATGAATTGGGTTATCCCATATCATCCTTGTTGACTGCTACAAGATATCTTTCCCATAAAATGGAAAGGGTGAAGCTTAGGGTACGCATGTTCAATTGGCTCAAAGATCATGGAATAGCTGCCCCTGGGCTTTCCTTGAGCACTCTTATTTCTTGCTCAGATAGTTATTTTATAAAGACTTATGTACATCGTCATCCTGCTGGTCCTCAAGTTTGGCACGATTTGAAGAATGAAATTGAATCCAATTGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
mTERF

Protein Analysis

231

Amino Acids

26.22

Weight (kDa)

8.67

Isoelectric Point (pI)

44.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
mTERF PF02536 103 - 205 2.4e-11 mTERF
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 617
AccB7I CCANNNNNTGG 1 cut(s) 505
AccIII TCCGGA 1 cut(s) 194
AclWI GGATC 1 cut(s) 360
AcuI CTGAAG 2 cut(s) 299, 305
AfaI GTAC 4 cut(s) 91, 125, 528, 630
AfeI AGCGCT 1 cut(s) 282
AfiI CCNNNNNNNGG 3 cut(s) 49, 194, 505
AgsI TTSAA 6 cut(s) 67, 380, 422, 538, 670, 683
AjnI CCWGG 2 cut(s) 129, 568
AluBI AGCT 5 cut(s) 81, 313, 344, 520, 563
AluI AGCT 5 cut(s) 81, 313, 344, 520, 563
Alw21I GWGCWC 2 cut(s) 62, 587
Alw26I GTCTC 1 cut(s) 123
AlwI GGATC 1 cut(s) 360
Aor13HI TCCGGA 1 cut(s) 194
Aor51HI AGCGCT 1 cut(s) 282
ApeKI GCWGC 4 cut(s) 8, 78, 278, 563
ArsI GACNNNNNNTTYG 2 cut(s) 233, 265
Asp700I GAANNNNTTC 1 cut(s) 375
AspLEI GCGC 1 cut(s) 283
AspS9I GGNCC 1 cut(s) 647
AsuHPI GGTGA 2 cut(s) 29, 526
AvaII GGWCC 1 cut(s) 647
BaeI ACNNNNGTAYC 2 cut(s) 518, 551
Bbv12I GWGCWC 2 cut(s) 62, 587
BbvI GCAGC 3 cut(s) 90, 290, 550
BciT130I CCWGG 2 cut(s) 131, 570
BcoDI GTCTC 1 cut(s) 123
BfaI CTAG 2 cut(s) 75, 239
BfmI CTRYAG 1 cut(s) 9
BfoI RGCGCY 1 cut(s) 284
BisI GCNGC 4 cut(s) 9, 79, 279, 564
BlsI GCNGC 4 cut(s) 10, 80, 280, 565
Bme1390I CCNGG 2 cut(s) 131, 570
Bme18I GGWCC 1 cut(s) 647
BmgT120I GGNCC 1 cut(s) 647
BmrFI CCNGG 2 cut(s) 131, 570
BmrI ACTGGG 1 cut(s) 59
BmuI ACTGGG 1 cut(s) 59
BpmI CTGGAG 1 cut(s) 247
Bpu10I CCTNAGC 1 cut(s) 521
BpuEI CTTGAG 2 cut(s) 601, 636
BsaJI CCNNGG 2 cut(s) 568, 569
BsaWI WCCGGW 1 cut(s) 194
BsaXI ACNNNNNCTCC 2 cut(s) 189, 219
Bsc4I CCNNNNNNNGG 3 cut(s) 49, 194, 505
Bse1I ACTGG 1 cut(s) 54
Bse3DI GCAATG 1 cut(s) 307
BseAI TCCGGA 1 cut(s) 194
BseBI CCWGG 2 cut(s) 131, 570
BseDI CCNNGG 2 cut(s) 568, 569
BseGI GGATG 4 cut(s) 126, 367, 467, 637
BseLI CCNNNNNNNGG 3 cut(s) 49, 194, 505
BseMI GCAATG 1 cut(s) 307
BseMII CTCAG 2 cut(s) 134, 615
BseNI ACTGG 1 cut(s) 54
BseRI GAGGAG 1 cut(s) 323
BseXI GCAGC 3 cut(s) 90, 290, 550
BsiHKAI GWGCWC 2 cut(s) 62, 587
BsiSI CCGG 1 cut(s) 195
BslI CCNNNNNNNGG 3 cut(s) 49, 194, 505
BsmAI GTCTC 1 cut(s) 123
Bsp1286I GDGCHC 2 cut(s) 62, 587
Bsp13I TCCGGA 1 cut(s) 194
Bsp1407I TGTACA 1 cut(s) 628
Bsp143I GATC 3 cut(s) 352, 429, 550
BspCNI CTCAG 2 cut(s) 133, 614
BspEI TCCGGA 1 cut(s) 194
BspMAI CTGCAG 1 cut(s) 13
BspPI GGATC 1 cut(s) 360
BsrDI GCAATG 1 cut(s) 307
BsrGI TGTACA 1 cut(s) 628
BsrI ACTGG 1 cut(s) 54
BssECI CCNNGG 2 cut(s) 568, 569
BssMI GATC 3 cut(s) 352, 429, 550
Bst2UI CCWGG 2 cut(s) 131, 570
Bst4CI ACNGT 1 cut(s) 437
BstAUI TGTACA 1 cut(s) 628
BstDEI CTNAG 4 cut(s) 120, 228, 521, 601
BstF5I GGATG 4 cut(s) 126, 367, 467, 637
BstH2I RGCGCY 1 cut(s) 284
BstHHI GCGC 1 cut(s) 283
BstKTI GATC 3 cut(s) 355, 432, 553
BstMAI GTCTC 1 cut(s) 123
BstMBI GATC 3 cut(s) 352, 429, 550
BstMWI GCNNNNNNNGC 1 cut(s) 287
BstNI CCWGG 2 cut(s) 131, 570
BstNSI RCATGY 3 cut(s) 101, 294, 535
BstSCI CCNGG 2 cut(s) 129, 568
BstSFI CTRYAG 1 cut(s) 9
BstV1I GCAGC 3 cut(s) 90, 290, 550
BtsCI GGATG 4 cut(s) 126, 367, 467, 637
CfoI GCGC 1 cut(s) 283
Cfr13I GGNCC 1 cut(s) 647
Csp6I GTAC 4 cut(s) 90, 124, 527, 629
CviAII CATG 5 cut(s) 98, 291, 384, 532, 554
CviJI RGCY 9 cut(s) 8, 81, 218, 313, 344, 520, 544, 563, 574
CviKI_1 RGCY 9 cut(s) 8, 81, 218, 313, 344, 520, 544, 563, 574
CviQI GTAC 4 cut(s) 90, 124, 527, 629
DdeI CTNAG 4 cut(s) 120, 228, 521, 601
DpnI GATC 3 cut(s) 354, 431, 552
DpnII GATC 3 cut(s) 352, 429, 550
Eco32I GATATC 1 cut(s) 491
Eco47I GGWCC 1 cut(s) 647
Eco47III AGCGCT 1 cut(s) 282
Eco57I CTGAAG 2 cut(s) 299, 305
EcoRII CCWGG 2 cut(s) 129, 568
EcoRV GATATC 1 cut(s) 491
FaeI CATG 5 cut(s) 101, 294, 387, 535, 557
FatI CATG 5 cut(s) 97, 290, 383, 531, 553
Fnu4HI GCNGC 4 cut(s) 9, 79, 279, 564
FokI GGATG 4 cut(s) 113, 374, 454, 624
Fsp4HI GCNGC 4 cut(s) 9, 79, 279, 564
FspBI CTAG 2 cut(s) 75, 239
GlaI GCGC 1 cut(s) 282
GluI GCNGC 4 cut(s) 9, 79, 279, 564
GsuI CTGGAG 1 cut(s) 247
HaeII RGCGCY 1 cut(s) 284
HapII CCGG 1 cut(s) 195
HhaI GCGC 1 cut(s) 283
Hin1II CATG 5 cut(s) 101, 294, 387, 535, 557
Hin6I GCGC 1 cut(s) 281
HinP1I GCGC 1 cut(s) 281
HincII GTYRAC 1 cut(s) 477
HindII GTYRAC 1 cut(s) 477
HindIII AAGCTT 1 cut(s) 518
HinfI GANTC 4 cut(s) 179, 191, 376, 683
HpaII CCGG 1 cut(s) 195
HphI GGTGA 2 cut(s) 29, 526
Hpy166II GTNNAC 2 cut(s) 371, 477
Hpy188I TCNGA 2 cut(s) 357, 604
Hpy188III TCNNGA 3 cut(s) 188, 195, 317
Hpy8I GTNNAC 2 cut(s) 371, 477
HpyAV CCTTC 2 cut(s) 280, 352
HpyCH4III ACNGT 1 cut(s) 437
HpyCH4V TGCA 2 cut(s) 11, 97
HpyF10VI GCNNNNNNNGC 1 cut(s) 287
HpyF3I CTNAG 4 cut(s) 120, 228, 521, 601
Hsp92II CATG 5 cut(s) 101, 294, 387, 535, 557
HspAI GCGC 1 cut(s) 281
Kpn2I TCCGGA 1 cut(s) 194
Kzo9I GATC 3 cut(s) 352, 429, 550
LmnI GCTCC 1 cut(s) 310
Lsp1109I GCAGC 3 cut(s) 90, 290, 550
MaeI CTAG 2 cut(s) 75, 239
MalI GATC 3 cut(s) 354, 431, 552
MboI GATC 3 cut(s) 352, 429, 550
MboII GAAGA 4 cut(s) 34, 118, 439, 682
MfeI CAATTG 2 cut(s) 538, 688
MhlI GDGCHC 2 cut(s) 62, 587
MluCI AATT 7 cut(s) 146, 154, 174, 449, 538, 678, 688
MlyI GAGTC 1 cut(s) 188
MnlI CCTC 4 cut(s) 290, 301, 399, 660
MroI TCCGGA 1 cut(s) 194
MroXI GAANNNNTTC 1 cut(s) 375
MseI TTAA 1 cut(s) 149
MspI CCGG 1 cut(s) 195
MspR9I CCNGG 2 cut(s) 131, 570
MunI CAATTG 2 cut(s) 538, 688
MvaI CCWGG 2 cut(s) 131, 570
MwoI GCNNNNNNNGC 1 cut(s) 287
NdeII GATC 3 cut(s) 352, 429, 550
NlaIII CATG 5 cut(s) 101, 294, 387, 535, 557
NspI RCATGY 3 cut(s) 101, 294, 535
PasI CCCWGGG 1 cut(s) 569
PdmI GAANNNNTTC 1 cut(s) 375
PfeI GAWTC 3 cut(s) 191, 376, 683
PflMI CCANNNNNTGG 1 cut(s) 505
PfoI TCCNGGA 1 cut(s) 129
PkrI GCNGC 4 cut(s) 10, 80, 280, 565
PleI GAGTC 1 cut(s) 187
PpsI GAGTC 1 cut(s) 187
PsiI TTATAA 1 cut(s) 617
Psp6I CCWGG 2 cut(s) 129, 568
PspGI CCWGG 2 cut(s) 129, 568
PspPI GGNCC 1 cut(s) 647
PstI CTGCAG 1 cut(s) 13
RsaI GTAC 4 cut(s) 91, 125, 528, 630
RsaNI GTAC 4 cut(s) 90, 124, 527, 629
SaqAI TTAA 1 cut(s) 149
SatI GCNGC 4 cut(s) 9, 79, 279, 564
Sau3AI GATC 3 cut(s) 352, 429, 550
Sau96I GGNCC 1 cut(s) 647
SchI GAGTC 1 cut(s) 188
ScrFI CCNGG 2 cut(s) 131, 570
SduI GDGCHC 2 cut(s) 62, 587
SetI ASST 6 cut(s) 83, 212, 315, 346, 522, 565
SfcI CTRYAG 1 cut(s) 9
SinI GGWCC 1 cut(s) 647
SmlI CTYRAG 2 cut(s) 580, 651
SmoI CTYRAG 2 cut(s) 580, 651
Sse9I AATT 7 cut(s) 146, 154, 174, 449, 538, 678, 688
SspMI CTAG 2 cut(s) 75, 239
StyD4I CCNGG 2 cut(s) 129, 568
TaaI ACNGT 1 cut(s) 437
TaqI TCGA 2 cut(s) 295, 432
TasI AATT 7 cut(s) 146, 154, 174, 449, 538, 678, 688
TatI WGTACW 3 cut(s) 89, 123, 628
TfiI GAWTC 3 cut(s) 191, 376, 683
Tru1I TTAA 1 cut(s) 149
Tru9I TTAA 1 cut(s) 149
TseI GCWGC 4 cut(s) 8, 78, 278, 563
TspDTI ATGAA 7 cut(s) 17, 20, 216, 287, 440, 462, 690
Van91I CCANNNNNTGG 1 cut(s) 505
VpaK11BI GGWCC 1 cut(s) 647
XceI RCATGY 3 cut(s) 101, 294, 535
XmnI GAANNNNTTC 1 cut(s) 375
XspI CTAG 2 cut(s) 75, 239
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.