Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0001228

Physical Location & Seq

Genomic Coordinates Forward (+)

25587300 .. 25589384

Gene Structure 2085 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG261700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 834 bp

ATGAATCGACAAGCTGTAAAACCCTTGTCGCACATGGACGACTACCAAACGTTTTCTCTGAAAGGCATCTACTCAATAAGCATCAGTACGAGAAACTCCTGCAGCCGGAGTCCAACTCTTTCTGGGTCTCGTCTGTTCAGTCCCAAAGCCGGCAGCTGCTCAAGAAGACAAGCAGATCGGACTATCGGAGACTTGGAGTCCGGACTTGGGAGGTCGACGGGGTTACTCGGTGAGTCGGTGTCTTGGAATGGTGACTGCTTTCAGATTTCAGACTGCGTCTGTGACTGCATCTACAAGCTTTTCCAAAGGGCTGATTGTGAGAAAGAGATTAGGCGGTCGATTGCTCGGTTCTTGCGGTACCACCCTATTAATGAATTTGAACCCTTCTTTGAGAGCTTGGGTTTGAAACCTTCCGAGTATGTTTCTCTTCTTCCACGCAATTTGATGTATTTGACTGATGATGAGTTGTTGCTTCATAATTATACTGTTTTATCTAATTATGGACTTCCGCCGAATAAGATAGGAAAGATTTACAGGGAAGCAACAGAGGTCTTTCAATATGATTTTCAGGTTTTGGCATCAAAACTTCAAGCTTATGAAGAACTAGGTCTTAGCCATTCTGCTTTAGTTCGCTATGTTGTTGGTAGTCCTTATCTTTTGGTTGGGGATGTCAATGCAGCATTTGTTTCAGTATTGGAAAAATTGAAGAGTATTGGATTTGAAACCAATAGGATTGAGGGGAATTTATGGGAAGATAACACTTATTTCCGCAACCTTATGGGATTGAGGGGAATTTATGTTCAATGTTTCTACAATTTCCGCAGATTCCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

mTERF

Protein Analysis

277

Amino Acids

31.69

Weight (kDa)

8.05

Isoelectric Point (pI)

41.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001228)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G06810 AT5G06811
fragaria_vesca	FvH4_6g22600 FvH4_6g22602 FvH4_6g47470
malus_domestica	MD00G1084200.v1.1 MD12G1058200.v1.1 MD14G1059500.v1.1 MD14G1059600.v1.1 MD14G1059700.v1.1 MD14G1059800.v1.1
prunus_persica	Prupe.7G074800_v2.0.a1 Prupe.7G074900_v2.0.a1 Prupe.7G075000_v2.0.a1
pyrus_communis	pycom12g05270 pycom12g05300 pycom14g04840 pycom14g04850
rosa_chinensis	RchiOBHm_Chr3g0480071 RchiOBHm_Chr3g0480081 RchiOBHm_Chr3g0480091 RchiOBHm_Chr3g0480101 RchiOBHm_Chr3g0480171
rosa_laevigata	RLG00000023515 RLG00000023517 RLG00000023518
rosa_multiflora	Rmu_co8013146.1_g000001 Rmu_co8232351.1_g000001 Rmu_sc0006604.1_g000015 Rmu_sc0011261.1_g000005 Rmu_sc0020879.1_g000002 Rmu_sc0020879.1_g000003
rosa_roxburghii	Rroxscaffold_6G00401750 Rroxscaffold_6G00401770 Rroxscaffold_6G00401780
rosa_rugosa	Rorug03G0180700 Rorug03G0180700 Rorug03G0180700
rosa_samantha	Rh3AG231500 Rh3AG231600 Rh3AG231700 Rh3AG231800 Rh3AG232500 Rh3BG263900 Rh3BG264000 Rh3BG264100 Rh3CG261500 Rh3CG261600 Rh3CG261700 Rh3CG261800 Rh3CG262200 Rh3DG257300 Rh3DG257400 Rh3DG257900
rosa_wichuraiana	Rw3G020820 Rw3G020830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	357
AccB1I	GGYRCC	1 cut(s)	357
AccI	GTMKAC	1 cut(s)	215
AccIII	TCCGGA	1 cut(s)	200
AciI	CCGC	5 cut(s)	334, 355, 509, 769, 820
AclI	AACGTT	1 cut(s)	50
AcsI	RAATTY	3 cut(s)	374, 742, 792
AfaI	GTAC	2 cut(s)	88, 359
AfiI	CCNNNNNNNGG	3 cut(s)	105, 149, 207
AgsI	TTSAA	7 cut(s)	380, 406, 557, 590, 706, 722, 803
AhdI	GACNNNNNGTC	1 cut(s)	196
AloI	GAACNNNNNNTCC	2 cut(s)	783, 815
AluBI	AGCT	5 cut(s)	14, 156, 298, 396, 593
AluI	AGCT	5 cut(s)	14, 156, 298, 396, 593
Alw26I	GTCTC	2 cut(s)	132, 183
Aor13HI	TCCGGA	1 cut(s)	200
ApeKI	GCWGC	4 cut(s)	102, 153, 156, 677
ApoI	RAATTY	3 cut(s)	374, 742, 792
AseI	ATTAAT	1 cut(s)	369
Asp718I	GGTACC	1 cut(s)	357
AsuHPI	GGTGA	2 cut(s)	242, 263
BanI	GGYRCC	1 cut(s)	357
BbsI	GAAGAC	1 cut(s)	172
BbvI	GCAGC	4 cut(s)	114, 143, 165, 689
BcoDI	GTCTC	2 cut(s)	132, 183
BfaI	CTAG	1 cut(s)	605
BfmI	CTRYAG	1 cut(s)	100
BisI	GCNGC	4 cut(s)	103, 154, 157, 678
BlsI	GCNGC	4 cut(s)	104, 155, 158, 679
BmeRI	GACNNNNNGTC	1 cut(s)	196
BmiI	GGNNCC	1 cut(s)	359
BmsI	GCATC	4 cut(s)	75, 90, 297, 587
BpiI	GAAGAC	1 cut(s)	172
BplI	GAGNNNNNCTC	2 cut(s)	100, 132
BpuEI	CTTGAG	1 cut(s)	145
BsaI	GGTCTC	1 cut(s)	132
BsaWI	WCCGGW	1 cut(s)	200
Bsc4I	CCNNNNNNNGG	3 cut(s)	105, 149, 207
Bse118I	RCCGGY	1 cut(s)	149
Bse1I	ACTGG	1 cut(s)	829
BseAI	TCCGGA	1 cut(s)	200
BseGI	GGATG	1 cut(s)	673
BseLI	CCNNNNNNNGG	3 cut(s)	105, 149, 207
BseNI	ACTGG	1 cut(s)	829
BseXI	GCAGC	4 cut(s)	114, 143, 165, 689
Bsh1285I	CGRYCG	1 cut(s)	338
BshNI	GGYRCC	1 cut(s)	357
BsiEI	CGRYCG	1 cut(s)	338
BsiSI	CCGG	3 cut(s)	106, 150, 201
BslFI	GGGAC	1 cut(s)	126
BslI	CCNNNNNNNGG	3 cut(s)	105, 149, 207
BsmAI	GTCTC	2 cut(s)	132, 183
BsmFI	GGGAC	1 cut(s)	126
Bso31I	GGTCTC	1 cut(s)	132
Bsp13I	TCCGGA	1 cut(s)	200
Bsp143I	GATC	1 cut(s)	175
BspACI	CCGC	5 cut(s)	334, 355, 509, 769, 820
BspEI	TCCGGA	1 cut(s)	200
BspLI	GGNNCC	1 cut(s)	359
BspMAI	CTGCAG	1 cut(s)	104
BspT107I	GGYRCC	1 cut(s)	357
BspTNI	GGTCTC	1 cut(s)	132
BsrFI	RCCGGY	1 cut(s)	149
BsrI	ACTGG	1 cut(s)	829
BssAI	RCCGGY	1 cut(s)	149
BssMI	GATC	1 cut(s)	175
Bst4CI	ACNGT	1 cut(s)	487
Bst6I	CTCTTC	2 cut(s)	432, 701
BstC8I	GCNNGC	1 cut(s)	151
BstDEI	CTNAG	1 cut(s)	611
BstF5I	GGATG	1 cut(s)	673
BstKTI	GATC	1 cut(s)	178
BstMAI	GTCTC	2 cut(s)	132, 183
BstMBI	GATC	1 cut(s)	175
BstMCI	CGRYCG	1 cut(s)	338
BstSFI	CTRYAG	1 cut(s)	100
BstV1I	GCAGC	4 cut(s)	114, 143, 165, 689
BstV2I	GAAGAC	1 cut(s)	172
BtsCI	GGATG	1 cut(s)	673
Cac8I	GCNNGC	1 cut(s)	151
Cfr10I	RCCGGY	1 cut(s)	149
CseI	GACGC	1 cut(s)	265
Csp6I	GTAC	2 cut(s)	87, 358
CspCI	CAANNNNNGTGG	2 cut(s)	423, 458
CviAII	CATG	1 cut(s)	34
CviJI	RGCY	9 cut(s)	14, 105, 149, 156, 298, 311, 396, 593, 615
CviKI_1	RGCY	9 cut(s)	14, 105, 149, 156, 298, 311, 396, 593, 615
CviQI	GTAC	2 cut(s)	87, 358
DdeI	CTNAG	1 cut(s)	611
DpnI	GATC	1 cut(s)	177
DpnII	GATC	1 cut(s)	175
DriI	GACNNNNNGTC	1 cut(s)	196
Eam1104I	CTCTTC	2 cut(s)	432, 701
Eam1105I	GACNNNNNGTC	1 cut(s)	196
EarI	CTCTTC	2 cut(s)	432, 701
EciI	GGCGGA	1 cut(s)	498
Eco31I	GGTCTC	1 cut(s)	132
FaeI	CATG	1 cut(s)	37
FaqI	GGGAC	1 cut(s)	126
FatI	CATG	1 cut(s)	33
FblI	GTMKAC	1 cut(s)	215
Fnu4HI	GCNGC	4 cut(s)	103, 154, 157, 678
FokI	GGATG	1 cut(s)	680
Fsp4HI	GCNGC	4 cut(s)	103, 154, 157, 678
FspBI	CTAG	1 cut(s)	605
GluI	GCNGC	4 cut(s)	103, 154, 157, 678
HapII	CCGG	3 cut(s)	106, 150, 201
HgaI	GACGC	1 cut(s)	265
Hin1II	CATG	1 cut(s)	37
HincII	GTYRAC	1 cut(s)	216
HindII	GTYRAC	1 cut(s)	216
HindIII	AAGCTT	2 cut(s)	296, 591
HinfI	GANTC	5 cut(s)	4, 109, 197, 233, 825
HpaII	CCGG	3 cut(s)	106, 150, 201
HphI	GGTGA	2 cut(s)	242, 263
Hpy166II	GTNNAC	1 cut(s)	216
Hpy188I	TCNGA	6 cut(s)	60, 180, 188, 264, 271, 415
Hpy188III	TCNNGA	2 cut(s)	162, 201
Hpy8I	GTNNAC	1 cut(s)	216
Hpy99I	CGWCG	1 cut(s)	220
HpyAV	CCTTC	2 cut(s)	394, 420
HpyCH4III	ACNGT	1 cut(s)	487
HpyCH4IV	ACGT	1 cut(s)	50
HpyCH4V	TGCA	3 cut(s)	102, 288, 677
HpyF3I	CTNAG	1 cut(s)	611
HpySE526I	ACGT	1 cut(s)	50
Hsp92II	CATG	1 cut(s)	37
Kpn2I	TCCGGA	1 cut(s)	200
KpnI	GGTACC	1 cut(s)	361
KroI	GCCGGC	1 cut(s)	149
KroNI	GCCGGC	1 cut(s)	151
Kzo9I	GATC	1 cut(s)	175
LpnPI	CCDG	7 cut(s)	108, 112, 119, 163, 214, 520, 554
Lsp1109I	GCAGC	4 cut(s)	114, 143, 165, 689
LweI	GCATC	4 cut(s)	75, 90, 297, 587
MaeI	CTAG	1 cut(s)	605
MaeII	ACGT	1 cut(s)	50
MaeIII	GTNAC	3 cut(s)	222, 251, 281
MalI	GATC	1 cut(s)	177
MboI	GATC	1 cut(s)	175
MboII	GAAGA	6 cut(s)	177, 419, 422, 611, 718, 764
MluCI	AATT	8 cut(s)	374, 439, 478, 496, 701, 742, 792, 814
MlyI	GAGTC	3 cut(s)	118, 206, 242
MmeI	TCCRAC	1 cut(s)	137
MnlI	CCTC	4 cut(s)	204, 541, 730, 780
MroI	TCCGGA	1 cut(s)	200
MroNI	GCCGGC	1 cut(s)	149
MseI	TTAA	1 cut(s)	369
MspA1I	CMGCKG	1 cut(s)	156
MspI	CCGG	3 cut(s)	106, 150, 201
NaeI	GCCGGC	1 cut(s)	151
NdeII	GATC	1 cut(s)	175
NgoMIV	GCCGGC	1 cut(s)	149
NlaIII	CATG	1 cut(s)	37
NlaIV	GGNNCC	1 cut(s)	359
NmuCI	GTSAC	2 cut(s)	251, 281
PdiI	GCCGGC	1 cut(s)	151
PfeI	GAWTC	2 cut(s)	4, 825
PflFI	GACNNNGTC	1 cut(s)	275
PkrI	GCNGC	4 cut(s)	104, 155, 158, 679
PleI	GAGTC	3 cut(s)	117, 205, 241
PpsI	GAGTC	3 cut(s)	117, 205, 241
PshBI	ATTAAT	1 cut(s)	369
Psp1406I	AACGTT	1 cut(s)	50
PspN4I	GGNNCC	1 cut(s)	359
PstI	CTGCAG	1 cut(s)	104
PsyI	GACNNNGTC	1 cut(s)	275
PvuII	CAGCTG	1 cut(s)	156
RsaI	GTAC	2 cut(s)	88, 359
RsaNI	GTAC	2 cut(s)	87, 358
SalI	GTCGAC	1 cut(s)	214
SaqAI	TTAA	1 cut(s)	369
SatI	GCNGC	4 cut(s)	103, 154, 157, 678
Sau3AI	GATC	1 cut(s)	175
SchI	GAGTC	3 cut(s)	118, 206, 242
SfaNI	GCATC	4 cut(s)	75, 90, 297, 587
SfcI	CTRYAG	1 cut(s)	100
SmlI	CTYRAG	1 cut(s)	160
SmoI	CTYRAG	1 cut(s)	160
Sse9I	AATT	8 cut(s)	374, 439, 478, 496, 701, 742, 792, 814
SsiI	CCGC	5 cut(s)	334, 355, 509, 769, 820
SspMI	CTAG	1 cut(s)	605
TaaI	ACNGT	1 cut(s)	487
TaiI	ACGT	1 cut(s)	53
TaqI	TCGA	3 cut(s)	7, 215, 338
TasI	AATT	8 cut(s)	374, 439, 478, 496, 701, 742, 792, 814
TfiI	GAWTC	2 cut(s)	4, 825
Tru1I	TTAA	1 cut(s)	369
Tru9I	TTAA	1 cut(s)	369
TseFI	GTSAC	2 cut(s)	251, 281
TseI	GCWGC	4 cut(s)	102, 153, 156, 677
Tsp45I	GTSAC	2 cut(s)	251, 281
TspDTI	ATGAA	4 cut(s)	17, 387, 464, 612
Tth111I	GACNNNGTC	1 cut(s)	275
VspI	ATTAAT	1 cut(s)	369
XapI	RAATTY	3 cut(s)	374, 742, 792
XmiI	GTMKAC	1 cut(s)	215
XspI	CTAG	1 cut(s)	605

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.