FvH4_6g47470
ERF Family

Transcription termination factor family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0001228
Physical Location & Seq
Reverse (-)
35954990 .. 35955985
996 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g47470.t1

Sequence Viewer

Length: 996 bp
ATGGAGGGGAATTTAAAGGAAGATAACACTTATCATTGGAGCCGGATGCTTGAAGTTTTTAGTTTGTTTAGTGAGATGGGTTGCAGTGATGAGCAGTTGGGCAAGCTACTTCGCCACAACCCAGATATTGTATTTCAAAGTTCGGGGGAAACGACAGTTTCACTGGTTGGGTTATTACAGAAGTTTGGATTTACAAAGAGAGAGTTATGTTCAATGTTTCTACAATTTCCACATATTCCGGTAGCAAAATTTGTTGCGAATTTGAGACAATGCATTTTGTTTCTGGATGAGATTGACATGAATGCTGCAGAGATTGGGAAGATTGTGCATACTCACACCCTGCTACTGGGTTTGTGCTCTTTGAAAAAAACTAAAAGCTTACTTGACACTTTGAATGTTGGGAAGAAACGATTGTCTCGGTACATCCAGGAGAACCCAGAAGAATTAAAAAAAAACTGGGTTTGGGGTAGAAAAGTTGAGTCATTTCCAGATTCGGGAGATGAAGTTAGATCAAAGGCTCAAAGGACCAAGTTCTTATTAGACATAGGATTTGTAGAAAACTCCAACAAAATGAAAGCAGCCCTTAAGGCATGTCGAGGCAACGGAGTGGAGCTTCAGGAAAGATTTGATTGTATTGTAAAAGCTGGTTTGGATTGGAAGGATGTCTGTGAACTGGTTCGATCAACCCCTCGAATTCTTAACCAGACAACGGATGTGATTGAAATGAAGATCAACTGTCTTGTAAATGAATTGGGCTATCTCATATGGTCCTTGTTGACCGTCAGAAGATTTCTTTCCTATAAAATGGAAAGGGTCAAGCTTAGGGTTCGCATGTTCAATTGGCTCAAAGATCATGGAATAGCTGATCCTGGGCTTTCGTTGAGCACTCTTATTTCTTGCTCAGAGAGTTATTTTATAAAGACTTGTGTACATCGTCATCCTGCCGGTCCTCAAGTTTGGCGTGATCTGAAGAATGAAATTGAATCCGATTGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
mTERF

Protein Analysis

332

Amino Acids

38.15

Weight (kDa)

8.72

Isoelectric Point (pI)

37.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
mTERF PF02536 21 - 185 2.4e-11 mTERF
mTERF PF02536 205 - 305 2.5e-08 mTERF
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 917
AclWI GGATC 1 cut(s) 860
AcsI RAATTY 4 cut(s) 10, 248, 259, 693
AcuI CTGAAG 2 cut(s) 599, 989
AfaI GTAC 2 cut(s) 422, 930
AfiI CCNNNNNNNGG 3 cut(s) 346, 494, 709
AflII CTTAAG 1 cut(s) 584
AgsI TTSAA 8 cut(s) 53, 137, 213, 364, 394, 722, 838, 983
AjnI CCWGG 2 cut(s) 426, 868
AluBI AGCT 6 cut(s) 106, 378, 613, 644, 820, 863
AluI AGCT 6 cut(s) 106, 378, 613, 644, 820, 863
Alw21I GWGCWC 2 cut(s) 359, 887
Alw26I GTCTC 2 cut(s) 259, 420
AlwI GGATC 1 cut(s) 860
ApeKI GCWGC 2 cut(s) 305, 578
ApoI RAATTY 4 cut(s) 10, 248, 259, 693
ArsI GACNNNNNNTTYG 2 cut(s) 533, 565
Asp700I GAANNNNTTC 1 cut(s) 675
AspS9I GGNCC 3 cut(s) 525, 768, 947
AvaII GGWCC 3 cut(s) 525, 768, 947
Bbv12I GWGCWC 2 cut(s) 359, 887
BbvI GCAGC 2 cut(s) 292, 590
BccI CCATC 1 cut(s) 70
BciT130I CCWGG 2 cut(s) 428, 870
BcoDI GTCTC 2 cut(s) 259, 420
BfmI CTRYAG 1 cut(s) 306
BfrI CTTAAG 1 cut(s) 584
BglI GCCNNNNNGGC 1 cut(s) 587
BisI GCNGC 2 cut(s) 306, 579
BlsI GCNGC 2 cut(s) 307, 580
Bme1390I CCNGG 2 cut(s) 428, 870
Bme18I GGWCC 3 cut(s) 525, 768, 947
BmgT120I GGNCC 3 cut(s) 525, 768, 947
BmiI GGNNCC 1 cut(s) 41
BmrFI CCNGG 2 cut(s) 428, 870
BmrI ACTGGG 2 cut(s) 356, 466
BmsI GCATC 1 cut(s) 36
BmuI ACTGGG 2 cut(s) 356, 466
Bpu10I CCTNAGC 1 cut(s) 821
BpuEI CTTGAG 1 cut(s) 936
BsaJI CCNNGG 1 cut(s) 869
BsaWI WCCGGW 1 cut(s) 238
BsaXI ACNNNNNCTCC 2 cut(s) 489, 519
Bsc4I CCNNNNNNNGG 3 cut(s) 346, 494, 709
Bse118I RCCGGY 1 cut(s) 944
Bse1I ACTGG 4 cut(s) 168, 351, 461, 678
BseBI CCWGG 2 cut(s) 428, 870
BseDI CCNNGG 1 cut(s) 869
BseGI GGATG 6 cut(s) 51, 292, 423, 667, 718, 937
BseLI CCNNNNNNNGG 3 cut(s) 346, 494, 709
BseMII CTCAG 1 cut(s) 915
BseNI ACTGG 4 cut(s) 168, 351, 461, 678
BseXI GCAGC 2 cut(s) 292, 590
BsiHKAI GWGCWC 2 cut(s) 359, 887
BsiSI CCGG 3 cut(s) 43, 239, 945
BslI CCNNNNNNNGG 3 cut(s) 346, 494, 709
BsmAI GTCTC 2 cut(s) 259, 420
BsmI GAATGC 1 cut(s) 307
Bsp1286I GDGCHC 2 cut(s) 359, 887
Bsp1407I TGTACA 1 cut(s) 928
Bsp143I GATC 6 cut(s) 509, 680, 729, 850, 865, 964
BspCNI CTCAG 1 cut(s) 914
BspLI GGNNCC 1 cut(s) 41
BspMAI CTGCAG 1 cut(s) 310
BspPI GGATC 1 cut(s) 860
BspTI CTTAAG 1 cut(s) 584
BsrFI RCCGGY 1 cut(s) 944
BsrGI TGTACA 1 cut(s) 928
BsrI ACTGG 4 cut(s) 168, 351, 461, 678
BssAI RCCGGY 1 cut(s) 944
BssECI CCNNGG 1 cut(s) 869
BssMI GATC 6 cut(s) 509, 680, 729, 850, 865, 964
Bst2UI CCWGG 2 cut(s) 428, 870
Bst4CI ACNGT 3 cut(s) 157, 737, 781
BstAFI CTTAAG 1 cut(s) 584
BstAUI TGTACA 1 cut(s) 928
BstC8I GCNNGC 1 cut(s) 104
BstDEI CTNAG 2 cut(s) 821, 901
BstF5I GGATG 6 cut(s) 51, 292, 423, 667, 718, 937
BstKTI GATC 6 cut(s) 512, 683, 732, 853, 868, 967
BstMAI GTCTC 2 cut(s) 259, 420
BstMBI GATC 6 cut(s) 509, 680, 729, 850, 865, 964
BstMWI GCNNNNNNNGC 1 cut(s) 587
BstNI CCWGG 2 cut(s) 428, 870
BstNSI RCATGY 2 cut(s) 594, 835
BstSCI CCNGG 2 cut(s) 426, 868
BstSFI CTRYAG 1 cut(s) 306
BstV1I GCAGC 2 cut(s) 292, 590
BtsCI GGATG 6 cut(s) 51, 292, 423, 667, 718, 937
BtsI GCAGTG 1 cut(s) 91
BtsIMutI CAGTG 2 cut(s) 91, 161
Cac8I GCNNGC 1 cut(s) 104
Cfr10I RCCGGY 1 cut(s) 944
Cfr13I GGNCC 3 cut(s) 525, 768, 947
Csp6I GTAC 2 cut(s) 421, 929
CviAII CATG 4 cut(s) 298, 591, 832, 854
CviQI GTAC 2 cut(s) 421, 929
DdeI CTNAG 2 cut(s) 821, 901
DpnI GATC 6 cut(s) 511, 682, 731, 852, 867, 966
DpnII GATC 6 cut(s) 509, 680, 729, 850, 865, 964
DraI TTTAAA 1 cut(s) 15
Eco47I GGWCC 3 cut(s) 525, 768, 947
Eco57I CTGAAG 2 cut(s) 599, 989
EcoRI GAATTC 1 cut(s) 693
EcoRII CCWGG 2 cut(s) 426, 868
EcoT22I ATGCAT 1 cut(s) 275
FaeI CATG 4 cut(s) 301, 594, 835, 857
FalI AAGNNNNNCTT 2 cut(s) 567, 599
FatI CATG 4 cut(s) 297, 590, 831, 853
FauNDI CATATG 1 cut(s) 764
Fnu4HI GCNGC 2 cut(s) 306, 579
FokI GGATG 6 cut(s) 58, 299, 410, 674, 725, 924
Fsp4HI GCNGC 2 cut(s) 306, 579
GluI GCNGC 2 cut(s) 306, 579
HapII CCGG 3 cut(s) 43, 239, 945
Hin1II CATG 4 cut(s) 301, 594, 835, 857
HincII GTYRAC 1 cut(s) 777
HindII GTYRAC 1 cut(s) 777
HindIII AAGCTT 2 cut(s) 376, 818
HinfI GANTC 3 cut(s) 479, 491, 983
HpaII CCGG 3 cut(s) 43, 239, 945
Hpy166II GTNNAC 3 cut(s) 671, 777, 929
Hpy188I TCNGA 4 cut(s) 785, 904, 969, 988
Hpy188III TCNNGA 4 cut(s) 284, 488, 495, 617
Hpy8I GTNNAC 3 cut(s) 671, 777, 929
HpyAV CCTTC 1 cut(s) 652
HpyCH4III ACNGT 3 cut(s) 157, 737, 781
HpyCH4V TGCA 4 cut(s) 84, 273, 308, 328
HpyF10VI GCNNNNNNNGC 1 cut(s) 587
HpyF3I CTNAG 2 cut(s) 821, 901
Hsp92II CATG 4 cut(s) 301, 594, 835, 857
Kzo9I GATC 6 cut(s) 509, 680, 729, 850, 865, 964
LmnI GCTCC 2 cut(s) 39, 610
Lsp1109I GCAGC 2 cut(s) 292, 590
LweI GCATC 1 cut(s) 36
MalI GATC 6 cut(s) 511, 682, 731, 852, 867, 966
MboI GATC 6 cut(s) 509, 680, 729, 850, 865, 964
MboII GAAGA 7 cut(s) 32, 331, 415, 452, 739, 798, 982
MfeI CAATTG 1 cut(s) 838
MhlI GDGCHC 2 cut(s) 359, 887
MluCI AATT 9 cut(s) 10, 224, 248, 259, 443, 693, 749, 838, 978
MlyI GAGTC 1 cut(s) 488
MmeI TCCRAC 1 cut(s) 588
MnlI CCTC 3 cut(s) 590, 699, 960
Mph1103I ATGCAT 1 cut(s) 275
MroXI GAANNNNTTC 1 cut(s) 675
MseI TTAA 4 cut(s) 14, 446, 585, 699
MspCI CTTAAG 1 cut(s) 584
MspI CCGG 3 cut(s) 43, 239, 945
MspR9I CCNGG 2 cut(s) 428, 870
MunI CAATTG 1 cut(s) 838
Mva1269I GAATGC 1 cut(s) 307
MvaI CCWGG 2 cut(s) 428, 870
MwoI GCNNNNNNNGC 1 cut(s) 587
NdeI CATATG 1 cut(s) 764
NdeII GATC 6 cut(s) 509, 680, 729, 850, 865, 964
NlaIII CATG 4 cut(s) 301, 594, 835, 857
NlaIV GGNNCC 1 cut(s) 41
NsiI ATGCAT 1 cut(s) 275
NspI RCATGY 2 cut(s) 594, 835
PcsI WCGNNNNNNNCGW 1 cut(s) 149
PctI GAATGC 1 cut(s) 307
PdmI GAANNNNTTC 1 cut(s) 675
PfeI GAWTC 2 cut(s) 491, 983
PfoI TCCNGGA 1 cut(s) 426
PkrI GCNGC 2 cut(s) 307, 580
PleI GAGTC 1 cut(s) 487
PpsI GAGTC 1 cut(s) 487
PsiI TTATAA 1 cut(s) 917
Psp6I CCWGG 2 cut(s) 426, 868
PspGI CCWGG 2 cut(s) 426, 868
PspN4I GGNNCC 1 cut(s) 41
PspPI GGNCC 3 cut(s) 525, 768, 947
PstI CTGCAG 1 cut(s) 310
RsaI GTAC 2 cut(s) 422, 930
RsaNI GTAC 2 cut(s) 421, 929
SaqAI TTAA 4 cut(s) 14, 446, 585, 699
SatI GCNGC 2 cut(s) 306, 579
Sau3AI GATC 6 cut(s) 509, 680, 729, 850, 865, 964
Sau96I GGNCC 3 cut(s) 525, 768, 947
SchI GAGTC 1 cut(s) 488
ScrFI CCNGG 2 cut(s) 428, 870
SduI GDGCHC 2 cut(s) 359, 887
SetI ASST 6 cut(s) 108, 380, 615, 646, 822, 865
SfaNI GCATC 1 cut(s) 36
SfcI CTRYAG 1 cut(s) 306
SinI GGWCC 3 cut(s) 525, 768, 947
SmlI CTYRAG 2 cut(s) 584, 951
SmoI CTYRAG 2 cut(s) 584, 951
Sse9I AATT 9 cut(s) 10, 224, 248, 259, 443, 693, 749, 838, 978
StyD4I CCNGG 2 cut(s) 426, 868
TaaI ACNGT 3 cut(s) 157, 737, 781
TaqI TCGA 3 cut(s) 595, 679, 691
TasI AATT 9 cut(s) 10, 224, 248, 259, 443, 693, 749, 838, 978
TatI WGTACW 1 cut(s) 928
TfiI GAWTC 2 cut(s) 491, 983
Tru1I TTAA 4 cut(s) 14, 446, 585, 699
Tru9I TTAA 4 cut(s) 14, 446, 585, 699
TscAI CASTG 2 cut(s) 91, 168
TseI GCWGC 2 cut(s) 305, 578
TspDTI ATGAA 6 cut(s) 314, 516, 587, 740, 762, 990
TspGWI ACGGA 2 cut(s) 618, 725
TspRI CASTG 2 cut(s) 91, 168
Vha464I CTTAAG 1 cut(s) 584
VpaK11BI GGWCC 3 cut(s) 525, 768, 947
XapI RAATTY 4 cut(s) 10, 248, 259, 693
XceI RCATGY 2 cut(s) 594, 835
XmnI GAANNNNTTC 1 cut(s) 675
Zsp2I ATGCAT 1 cut(s) 275
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.