RchiOBHm_Chr3g0480171
ERF Family

mTERF

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0001228
Physical Location & Seq
Forward (+)
25924934 .. 25926997
2064 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ44520

Sequence Viewer

Length: 1764 bp
ATGACCCATTTGCAAAAACTCAGGATAGCATCTATTCCCAGCTGGGTTTCTTCTATTTTTCATGAAAATCACCTTAGATCACCAAGAACCCTATTTGGGGTTTTCCCCAATGTCCAAATCCCTAGAGTTTACAGCACAAAAATGGCCCCTGAAATTGAAAACCATGAAGTTTTGGTTGAAACTTCGACTGCTAAGGGCAGAAGTGCTACTCGAACTCTTCGTTACATTCAAAAAGAAACGCAGGCTGCATTGTTGGAGTATTTGCACAGTACTAGAGGCTTACATTTCACTGATGCTGAGAATATTAGTAAAAACTGCCCACATTTTCTAGACAAGCTTTTTCACAGGGCTGATTGTGAGAGAGAGATTAGGCGGTCAATTGCTCGGTTCTTGCGGTACCACCCTATTAATGAATTTGAACCCTTCTTTGAGAGCTTGGGTTTGAAACCTTCCGAGTATGTTTCTCTTCTTCCACGCAATTTGATGTATTTGACTGATGATGAGTTGTTGCTTCATAATTATACTGTTTTATCTAATTATGGGATTCCACCAAATAAGATAGGAAAGATTTACAGGGAAGCAACAGAGGTCTTTCAATATGATTTTCAGGTTTTGGCATCAAAACTTCAAGCTTATGAAGAACTAGGTCTTAGCCGTTCTGCTTTAGTTCGCTATGTTGTTGGTGGTCCTTATCTTTTGGTTGGGGATGTCAATGCAGCATTTGTTTCAGTATTGGAAAAATTGAAGAGTATTGGATTTGAAACCAATAGGATTGAGGGGAATTTATGGGAAGATAACACTTATTATTGGAGCCGGATGCTTGAAGTTCTGAGTTTGTTTAGTGAGATGGGTTGCAGTGATGAGCAGTTGGGCAAGCTACTTTGTCACAACCCAGATATTTTATTTGAAAGTTCAGGGGAAATGACAGTTTCACTGATTGGGTTGTTACAAAAATTTGGATTTACAAAGAGGGAGTTATGTTCAATGTTTCTACAATTTCCGCAGATTCCAGTAGCAAAATTTGTTGCAAATTTGAGACGGTGCATTTTGTTCCTGGATGAGATTGACATGAAGGCTGCAGAGATTGGGAAGATTGTTCATTCTCACCCCCTGCTACTGGGTTCGTGCTCTTTGAAAAAAACTAGCAGCTTACTTTGTACTTTGAATGTTGGGAAGAAACGATTGTCTCAATACATCCAGGAGAACCCACAAGAGTTAAAGAATTGGGTTTGGGGTAGAAAAATTGAGTCATTTCCAGATTCAGGAGATGAAGTTAGATCAAAGGCTGAAAGGACTAAGTTCTTGTTAGACATAGGATTTGTAGAAAACTCCAGCAAAATGAAAGCAGCGCTGAAGGCATGTCGAGGCAATGGAGAGGAGCTTCAGGAAAGATTTGATTGCATAGTAAAAGCTGGTTTGGATCAGAAGGATGTCTGTGAACTGATTCAATCATGCCCTCAAAATCTTAACCAGACAACGGATGTGATTGAAATGAAGATCGACTGTCTTGTAAATGAATTGGGTTATCCCATATCGTCCTTGTTGACTGCCACAAGATATCTTTCCCATAAAATGGAAAGGGTCAAGCTTAGGGTACGCATGTTCAATTGGCTCAAAGATCATGGAATAGCTGCTCCTGGGCTTTCCTTGAGCACTCTTATTTCTTGCTCAGATAGTTATTTTATAAAGACTTATGTACATCGTCATCCTGCTGGTCCTCAAGTTTGGCACGATTTGAAGAAGGAAATTGAATCCAATTGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
mTERF

Protein Analysis

587

Amino Acids

67.22

Weight (kDa)

8.07

Isoelectric Point (pI)

43.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
mTERF PF02536 277 - 442 9.6e-13 mTERF
mTERF PF02536 459 - 561 5.5e-12 mTERF
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1685
Acc65I GGTACC 1 cut(s) 396
AccB1I GGYRCC 1 cut(s) 396
AccB7I CCANNNNNTGG 1 cut(s) 1573
AciI CCGC 3 cut(s) 373, 394, 1001
AclWI GGATC 1 cut(s) 1428
AcsI RAATTY 5 cut(s) 413, 781, 953, 1019, 1030
AcuI CTGAAG 2 cut(s) 1367, 1373
AfaI GTAC 5 cut(s) 271, 398, 1159, 1596, 1698
AfeI AGCGCT 1 cut(s) 1350
AfiI CCNNNNNNNGG 6 cut(s) 96, 97, 1117, 1262, 1477, 1573
AjnI CCWGG 3 cut(s) 1053, 1197, 1636
Alw21I GWGCWC 2 cut(s) 1130, 1655
Alw26I GTCTC 2 cut(s) 1030, 1191
AlwI GGATC 1 cut(s) 1428
Aor51HI AGCGCT 1 cut(s) 1350
AoxI GGCC 1 cut(s) 144
ApeKI GCWGC 6 cut(s) 245, 716, 1076, 1146, 1346, 1631
ApoI RAATTY 5 cut(s) 413, 781, 953, 1019, 1030
ArsI GACNNNNNNTTYG 2 cut(s) 1301, 1333
AseI ATTAAT 1 cut(s) 408
Asp700I GAANNNNTTC 1 cut(s) 1443
Asp718I GGTACC 1 cut(s) 396
AspLEI GCGC 1 cut(s) 1351
AspS9I GGNCC 3 cut(s) 145, 686, 1715
AsuHPI GGTGA 3 cut(s) 62, 72, 1097
AvaII GGWCC 2 cut(s) 686, 1715
BaeI ACNNNNGTAYC 2 cut(s) 1586, 1619
BanI GGYRCC 1 cut(s) 396
Bbv12I GWGCWC 2 cut(s) 1130, 1655
BbvI GCAGC 6 cut(s) 232, 728, 1063, 1158, 1358, 1618
BccI CCATC 1 cut(s) 841
BceAI ACGGC 1 cut(s) 639
BciT130I CCWGG 3 cut(s) 1055, 1199, 1638
BcoDI GTCTC 2 cut(s) 1030, 1191
BfaI CTAG 5 cut(s) 123, 273, 329, 644, 1143
BfmI CTRYAG 1 cut(s) 1077
BfoI RGCGCY 1 cut(s) 1352
BisI GCNGC 6 cut(s) 246, 717, 1077, 1147, 1347, 1632
BlsI GCNGC 6 cut(s) 247, 718, 1078, 1148, 1348, 1633
BmcAI AGTACT 1 cut(s) 271
Bme1390I CCNGG 3 cut(s) 1055, 1199, 1638
Bme18I GGWCC 2 cut(s) 686, 1715
BmgT120I GGNCC 3 cut(s) 145, 686, 1715
BmiI GGNNCC 3 cut(s) 147, 398, 812
BmrFI CCNGG 3 cut(s) 1055, 1199, 1638
BmrI ACTGGG 1 cut(s) 1127
BmsI GCATC 4 cut(s) 38, 283, 626, 807
BmuI ACTGGG 1 cut(s) 1127
BpmI CTGGAG 1 cut(s) 1315
Bpu10I CCTNAGC 2 cut(s) 192, 1589
BpuEI CTTGAG 2 cut(s) 1669, 1704
BsaJI CCNNGG 1 cut(s) 1637
BsaXI ACNNNNNCTCC 2 cut(s) 1257, 1287
Bsc4I CCNNNNNNNGG 6 cut(s) 96, 97, 1117, 1262, 1477, 1573
Bse1I ACTGG 2 cut(s) 1010, 1122
Bse3DI GCAATG 1 cut(s) 1375
BseBI CCWGG 3 cut(s) 1055, 1199, 1638
BseDI CCNNGG 1 cut(s) 1637
BseGI GGATG 7 cut(s) 712, 822, 1063, 1194, 1435, 1486, 1705
BseLI CCNNNNNNNGG 6 cut(s) 96, 97, 1117, 1262, 1477, 1573
BseMI GCAATG 1 cut(s) 1375
BseMII CTCAG 4 cut(s) 34, 288, 821, 1683
BseNI ACTGG 2 cut(s) 1010, 1122
BseRI GAGGAG 1 cut(s) 1391
BseXI GCAGC 6 cut(s) 232, 728, 1063, 1158, 1358, 1618
BseYI CCCAGC 2 cut(s) 38, 42
BshFI GGCC 1 cut(s) 146
BshNI GGYRCC 1 cut(s) 396
BsiHKAI GWGCWC 2 cut(s) 1130, 1655
BsiSI CCGG 1 cut(s) 814
BslI CCNNNNNNNGG 6 cut(s) 96, 97, 1117, 1262, 1477, 1573
BsmAI GTCTC 2 cut(s) 1030, 1191
BsmBI CGTCTC 1 cut(s) 1030
BsnI GGCC 1 cut(s) 146
Bsp1286I GDGCHC 2 cut(s) 1130, 1655
Bsp1407I TGTACA 1 cut(s) 1696
Bsp143I GATC 5 cut(s) 77, 1277, 1420, 1497, 1618
BspACI CCGC 3 cut(s) 373, 394, 1001
BspANI GGCC 1 cut(s) 146
BspCNI CTCAG 4 cut(s) 33, 289, 822, 1682
BspHI TCATGA 1 cut(s) 61
BspLI GGNNCC 3 cut(s) 147, 398, 812
BspMAI CTGCAG 1 cut(s) 1081
BspPI GGATC 1 cut(s) 1428
BspT107I GGYRCC 1 cut(s) 396
BsrDI GCAATG 1 cut(s) 1375
BsrGI TGTACA 1 cut(s) 1696
BsrI ACTGG 2 cut(s) 1010, 1122
BssECI CCNNGG 1 cut(s) 1637
BssMI GATC 5 cut(s) 77, 1277, 1420, 1497, 1618
Bst2UI CCWGG 3 cut(s) 1055, 1199, 1638
Bst4CI ACNGT 5 cut(s) 269, 526, 928, 1041, 1505
Bst6I CTCTTC 3 cut(s) 222, 471, 740
BstAUI TGTACA 1 cut(s) 1696
BstC8I GCNNGC 2 cut(s) 243, 875
BstDEI CTNAG 9 cut(s) 20, 74, 192, 297, 650, 830, 1296, 1589, 1669
BstF5I GGATG 7 cut(s) 712, 822, 1063, 1194, 1435, 1486, 1705
BstH2I RGCGCY 1 cut(s) 1352
BstHHI GCGC 1 cut(s) 1351
BstKTI GATC 5 cut(s) 80, 1280, 1423, 1500, 1621
BstMAI GTCTC 2 cut(s) 1030, 1191
BstMBI GATC 5 cut(s) 77, 1277, 1420, 1497, 1618
BstMWI GCNNNNNNNGC 1 cut(s) 1355
BstNI CCWGG 3 cut(s) 1055, 1199, 1638
BstNSI RCATGY 2 cut(s) 1362, 1603
BstSCI CCNGG 3 cut(s) 1053, 1197, 1636
BstSFI CTRYAG 1 cut(s) 1077
BstV1I GCAGC 6 cut(s) 232, 728, 1063, 1158, 1358, 1618
BsuRI GGCC 1 cut(s) 146
BtsCI GGATG 7 cut(s) 712, 822, 1063, 1194, 1435, 1486, 1705
BtsI GCAGTG 1 cut(s) 862
BtsIMutI CAGTG 3 cut(s) 288, 862, 932
Cac8I GCNNGC 2 cut(s) 243, 875
CciI TCATGA 1 cut(s) 61
CfoI GCGC 1 cut(s) 1351
Cfr13I GGNCC 3 cut(s) 145, 686, 1715
Csp6I GTAC 5 cut(s) 270, 397, 1158, 1595, 1697
CspCI CAANNNNNGTGG 2 cut(s) 462, 497
CviAII CATG 7 cut(s) 62, 164, 1069, 1359, 1452, 1600, 1622
CviQI GTAC 5 cut(s) 270, 397, 1158, 1595, 1697
DdeI CTNAG 9 cut(s) 20, 74, 192, 297, 650, 830, 1296, 1589, 1669
DpnI GATC 5 cut(s) 79, 1279, 1422, 1499, 1620
DpnII GATC 5 cut(s) 77, 1277, 1420, 1497, 1618
Eam1104I CTCTTC 3 cut(s) 222, 471, 740
EarI CTCTTC 3 cut(s) 222, 471, 740
Eco32I GATATC 1 cut(s) 1559
Eco47I GGWCC 2 cut(s) 686, 1715
Eco47III AGCGCT 1 cut(s) 1350
Eco57I CTGAAG 2 cut(s) 1367, 1373
EcoRII CCWGG 3 cut(s) 1053, 1197, 1636
EcoRV GATATC 1 cut(s) 1559
Esp3I CGTCTC 1 cut(s) 1030
FaeI CATG 7 cut(s) 65, 167, 1072, 1362, 1455, 1603, 1625
FatI CATG 7 cut(s) 61, 163, 1068, 1358, 1451, 1599, 1621
Fnu4HI GCNGC 6 cut(s) 246, 717, 1077, 1147, 1347, 1632
FokI GGATG 7 cut(s) 719, 829, 1070, 1181, 1442, 1493, 1692
Fsp4HI GCNGC 6 cut(s) 246, 717, 1077, 1147, 1347, 1632
FspBI CTAG 5 cut(s) 123, 273, 329, 644, 1143
GlaI GCGC 1 cut(s) 1350
GluI GCNGC 6 cut(s) 246, 717, 1077, 1147, 1347, 1632
GsaI CCCAGC 2 cut(s) 42, 46
GsuI CTGGAG 1 cut(s) 1315
HaeII RGCGCY 1 cut(s) 1352
HaeIII GGCC 1 cut(s) 146
HapII CCGG 1 cut(s) 814
HhaI GCGC 1 cut(s) 1351
Hin1II CATG 7 cut(s) 65, 167, 1072, 1362, 1455, 1603, 1625
Hin6I GCGC 1 cut(s) 1349
HinP1I GCGC 1 cut(s) 1349
HincII GTYRAC 1 cut(s) 1545
HindII GTYRAC 1 cut(s) 1545
HindIII AAGCTT 3 cut(s) 335, 630, 1586
HinfI GANTC 6 cut(s) 544, 1006, 1247, 1259, 1444, 1751
HpaII CCGG 1 cut(s) 814
HphI GGTGA 3 cut(s) 62, 72, 1097
Hpy166II GTNNAC 3 cut(s) 130, 1439, 1545
Hpy188I TCNGA 4 cut(s) 454, 831, 1425, 1672
Hpy188III TCNNGA 6 cut(s) 22, 62, 329, 1256, 1263, 1385
Hpy8I GTNNAC 3 cut(s) 130, 1439, 1545
HpyAV CCTTC 6 cut(s) 433, 459, 1066, 1348, 1420, 1735
HpyCH4III ACNGT 5 cut(s) 269, 526, 928, 1041, 1505
HpyCH4V TGCA 9 cut(s) 13, 248, 265, 716, 855, 1028, 1044, 1079, 1401
HpyF10VI GCNNNNNNNGC 1 cut(s) 1355
HpyF3I CTNAG 9 cut(s) 20, 74, 192, 297, 650, 830, 1296, 1589, 1669
Hsp92II CATG 7 cut(s) 65, 167, 1072, 1362, 1455, 1603, 1625
HspAI GCGC 1 cut(s) 1349
KpnI GGTACC 1 cut(s) 400
Kzo9I GATC 5 cut(s) 77, 1277, 1420, 1497, 1618
LmnI GCTCC 3 cut(s) 810, 1378, 1639
Lsp1109I GCAGC 6 cut(s) 232, 728, 1063, 1158, 1358, 1618
LweI GCATC 4 cut(s) 38, 283, 626, 807
MaeI CTAG 5 cut(s) 123, 273, 329, 644, 1143
MaeIII GTNAC 3 cut(s) 221, 884, 945
MalI GATC 5 cut(s) 79, 1279, 1422, 1499, 1620
MboI GATC 5 cut(s) 77, 1277, 1420, 1497, 1618
MfeI CAATTG 3 cut(s) 378, 1606, 1756
MhlI GDGCHC 2 cut(s) 1130, 1655
MlyI GAGTC 1 cut(s) 1256
MmeI TCCRAC 1 cut(s) 234
MnlI CCTC 8 cut(s) 269, 580, 769, 963, 1358, 1369, 1467, 1728
MroXI GAANNNNTTC 1 cut(s) 1443
MseI TTAA 3 cut(s) 408, 1217, 1467
MslI CAYNNNNRTG 1 cut(s) 140
MspA1I CMGCKG 1 cut(s) 42
MspI CCGG 1 cut(s) 814
MspR9I CCNGG 3 cut(s) 1055, 1199, 1638
MunI CAATTG 3 cut(s) 378, 1606, 1756
MvaI CCWGG 3 cut(s) 1055, 1199, 1638
MwoI GCNNNNNNNGC 1 cut(s) 1355
NdeII GATC 5 cut(s) 77, 1277, 1420, 1497, 1618
NlaIII CATG 7 cut(s) 65, 167, 1072, 1362, 1455, 1603, 1625
NlaIV GGNNCC 3 cut(s) 147, 398, 812
NmuCI GTSAC 1 cut(s) 884
NspI RCATGY 2 cut(s) 1362, 1603
PagI TCATGA 1 cut(s) 61
PcsI WCGNNNNNNNCGW 1 cut(s) 217
PdmI GAANNNNTTC 1 cut(s) 1443
PfeI GAWTC 5 cut(s) 544, 1006, 1259, 1444, 1751
PflMI CCANNNNNTGG 1 cut(s) 1573
PfoI TCCNGGA 2 cut(s) 1053, 1197
PkrI GCNGC 6 cut(s) 247, 718, 1078, 1148, 1348, 1633
PleI GAGTC 1 cut(s) 1255
PpsI GAGTC 1 cut(s) 1255
PshBI ATTAAT 1 cut(s) 408
PsiI TTATAA 1 cut(s) 1685
Psp6I CCWGG 3 cut(s) 1053, 1197, 1636
PspFI CCCAGC 2 cut(s) 38, 42
PspGI CCWGG 3 cut(s) 1053, 1197, 1636
PspN4I GGNNCC 3 cut(s) 147, 398, 812
PspPI GGNCC 3 cut(s) 145, 686, 1715
PstI CTGCAG 1 cut(s) 1081
PvuII CAGCTG 1 cut(s) 42
RsaI GTAC 5 cut(s) 271, 398, 1159, 1596, 1698
RsaNI GTAC 5 cut(s) 270, 397, 1158, 1595, 1697
RseI CAYNNNNRTG 1 cut(s) 140
SaqAI TTAA 3 cut(s) 408, 1217, 1467
SatI GCNGC 6 cut(s) 246, 717, 1077, 1147, 1347, 1632
Sau3AI GATC 5 cut(s) 77, 1277, 1420, 1497, 1618
Sau96I GGNCC 3 cut(s) 145, 686, 1715
ScaI AGTACT 1 cut(s) 271
SchI GAGTC 1 cut(s) 1256
ScrFI CCNGG 3 cut(s) 1055, 1199, 1638
SduI GDGCHC 2 cut(s) 1130, 1655
SfaNI GCATC 4 cut(s) 38, 283, 626, 807
SfcI CTRYAG 1 cut(s) 1077
SinI GGWCC 2 cut(s) 686, 1715
SmiMI CAYNNNNRTG 1 cut(s) 140
SmlI CTYRAG 2 cut(s) 1648, 1719
SmoI CTYRAG 2 cut(s) 1648, 1719
SsiI CCGC 3 cut(s) 373, 394, 1001
SspI AATATT 1 cut(s) 304
SspMI CTAG 5 cut(s) 123, 273, 329, 644, 1143
StyD4I CCNGG 3 cut(s) 1053, 1197, 1636
TaaI ACNGT 5 cut(s) 269, 526, 928, 1041, 1505
TaqI TCGA 4 cut(s) 185, 211, 1363, 1500
TatI WGTACW 3 cut(s) 269, 1157, 1696
TfiI GAWTC 5 cut(s) 544, 1006, 1259, 1444, 1751
Tru1I TTAA 3 cut(s) 408, 1217, 1467
Tru9I TTAA 3 cut(s) 408, 1217, 1467
TscAI CASTG 3 cut(s) 295, 862, 939
TseFI GTSAC 1 cut(s) 884
TseI GCWGC 6 cut(s) 245, 716, 1076, 1146, 1346, 1631
Tsp45I GTSAC 1 cut(s) 884
TspGWI ACGGA 1 cut(s) 1493
TspRI CASTG 3 cut(s) 295, 862, 939
Van91I CCANNNNNTGG 1 cut(s) 1573
VpaK11BI GGWCC 2 cut(s) 686, 1715
VspI ATTAAT 1 cut(s) 408
XapI RAATTY 5 cut(s) 413, 781, 953, 1019, 1030
XbaI TCTAGA 1 cut(s) 328
XceI RCATGY 2 cut(s) 1362, 1603
XmnI GAANNNNTTC 1 cut(s) 1443
XspI CTAG 5 cut(s) 123, 273, 329, 644, 1143
ZrmI AGTACT 1 cut(s) 271
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.