Rh3CG261500
ERF Family

mTERF

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
Physical Location & Seq
Forward (+)
25572218 .. 25574682
2465 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG261500.1

Sequence Viewer

Length: 1749 bp
ATGACCCATCTGCACAAATTGAGAACAGCATCCATTCTCAGATGGGTCTCTTCAAATTTTGATGAAAACCACTTCAGACTATTAGGAACCCCAGCTCGGCCAATTGGGTCTCTCCCCAGTGCCCAAACCACTAGACTTTACAGAACTAAAAGGAACCCTGTGACTGAAAGCTGTGAAATTACTTGGCCTGAAAATGCTGGTCGAGTTTCTCGTGCTGTTCGACAAGAAGCGCAAGCTGCATTGTTGGACTATTTGTATGGTAATAGAGGCCTGCACTTTGCGGATGCAGAGAATATGAGCAAAAACTCACCGCATTTTCTCAACAAGCTTTTGAAATGCGTTGGTAGTGATAAGGAAATCCGGCAGTCGGTTTCCCGGTACTTGCTTTACCACCCTGTTAATGAGTTTGAGCCTTTCTTTGAGAGTTTGGGTTTGAAACCTTCAGAGTATGTTCATTTTCTTCCACCTAATTCCATGTTCTTGATCGATGAGAGTCTGTTGCTTCACAATTATGCTGTTTTGTGTCAGTTTGGGGTTGCGCGTAATAGGATAGGGAAGATTTACATGGAAGCTACAGAAGTTTTTCGATATGATTTTAAGGTTTTGCAATCAAAACTTCGAGCCTATGAAGAGCTGGGTCTCAGTCGATATGCTTTAGTTAAGTTTATTGTTGCTGCTCCTTATTTGTTAGTTGGGGATGTAGATGTGGCATTTGTTGAGGTGTTGGAGAAATTGAGGAGCCTTGGATTTGAAACCAGTTGGGTTCAGGGGAACTTATCGGAATCGGATTCTTATAATTGGGGACGGATGCTTGGAGTTCTGAGTTTGCTTAGTGATATTGGTTGCAGCAACAAGCAGTTGGGTGTATTGCTTGGCCAGCATCCAGATTTTGTGTTTGAGGCTTCAGGGGGAAGGACATTTTTACTAACTGGGATCTTTCTGAAATTTGGATGCACAATGAGCCAGATATGTTCAATGTTTCTGCAGTTTCCTCAAATTGAAGTTACGAAATTTGTTTTGAATATGAGGAGATGTTTTTTGATCCTGCATGAAATCAAAATGGAGTTTACAGAGATAGGGAAGATTGTGCATTCTCAACCCCTGCTACTGGGTTCCATTGCATTGAAAAGTACCAACACCTTACTTCTTCACTTAAAGATGGGAAAGAAGGAGCTGTCTAGATACATCCAGGAGAACCCACAAGAAATGAAGAATTGGGTATTTGGTAGAACACTTAGGCCATTAGAGCTGGGAGAGAACCTCAGATCAAAGACACACAAGATGAAGTTTTTGTTAGATATAGGATTTGTAGAGAACCCTAACAAAATAACAGAAGCGGTAAATCAGTTTCAAGGCAATGGATGGGAGCTTCAGGAAAGATTTGATTGCATTGTGGAAGCTGGTTTAGATCGTGATGAAGTCTGTAAACTGATTAAACGATATCCTCTTGTTCTTTGTCAGTCAAAGAAACTTATAGAAATGAAGATTGATCTCCTTGTAAATCATTTGTGTTATCCCTTGTCAACTTTGCTGTCCTTCCCAAGATATCTTACCTGTGGAATTAAAAGGGTCAAGCATAGGGTATTCATGTACAATTGGCTCAAAGATCAAGGAACAGTTGAACCTGGTTCTGCCTTGAGCACTATTTTATATCCCTCAGATCTATGTTTTCTGAGGAAGTTTGTAAATCATCATCCTTGTGGTCTTGAAGTTTGGCAGGATTTGAAGAATAAAATTTATTCAGGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

582

Amino Acids

66.89

Weight (kDa)

8.99

Isoelectric Point (pI)

40.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
mTERF PF02536 274 - 438 7.7e-08 mTERF
mTERF PF02536 457 - 557 3.9e-12 mTERF
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 795
AccII CGCG 1 cut(s) 541
AciI CCGC 3 cut(s) 281, 311, 1337
AclWI GGATC 2 cut(s) 941, 1036
AcoI YGGCCR 2 cut(s) 98, 874
AcsI RAATTY 4 cut(s) 55, 944, 1010, 1734
AcuI CTGAAG 4 cut(s) 58, 426, 888, 1355
AfaI GTAC 3 cut(s) 380, 1132, 1592
AfiI CCNNNNNNNGG 3 cut(s) 96, 367, 1108
AjnI CCWGG 2 cut(s) 1188, 1624
Alw21I GWGCWC 1 cut(s) 1643
Alw26I GTCTC 3 cut(s) 52, 114, 644
AlwI GGATC 2 cut(s) 941, 1036
AoxI GGCC 5 cut(s) 98, 185, 268, 874, 1238
ApeKI GCWGC 3 cut(s) 236, 674, 846
ApoI RAATTY 4 cut(s) 55, 944, 1010, 1734
Asp700I GAANNNNTTC 1 cut(s) 582
AspLEI GCGC 2 cut(s) 232, 541
AsuC2I CCSGG 1 cut(s) 376
AsuHPI GGTGA 1 cut(s) 300
BaeGI GKGCMC 1 cut(s) 124
BalI TGGCCA 1 cut(s) 876
BauI CACGAG 1 cut(s) 210
Bbv12I GWGCWC 1 cut(s) 1643
BbvI GCAGC 3 cut(s) 223, 661, 858
BccI CCATC 4 cut(s) 15, 36, 1153, 1356
BciT130I CCWGG 2 cut(s) 1190, 1626
BcnI CCSGG 1 cut(s) 376
BcoDI GTCTC 3 cut(s) 52, 114, 644
BfaI CTAG 2 cut(s) 132, 1179
BfmI CTRYAG 2 cut(s) 573, 983
BglII AGATCT 1 cut(s) 1660
BisI GCNGC 3 cut(s) 237, 675, 847
BlsI GCNGC 3 cut(s) 238, 676, 848
Bme1390I CCNGG 3 cut(s) 376, 1190, 1626
BmiI GGNNCC 4 cut(s) 88, 155, 740, 1114
BmrFI CCNGG 3 cut(s) 376, 1190, 1626
BmrI ACTGGG 3 cut(s) 111, 939, 1118
BmsI GCATC 5 cut(s) 38, 274, 798, 889, 941
BmuI ACTGGG 3 cut(s) 111, 939, 1118
BplI GAGNNNNNCTC 2 cut(s) 1245, 1277
BpuEI CTTGAG 1 cut(s) 1657
BpuMI CCSGG 1 cut(s) 376
Bsa29I ATCGAT 1 cut(s) 486
BsaI GGTCTC 3 cut(s) 52, 114, 644
BsaJI CCNNGG 1 cut(s) 742
Bsc4I CCNNNNNNNGG 3 cut(s) 96, 367, 1108
Bse1I ACTGG 4 cut(s) 117, 756, 934, 1113
Bse3DI GCAATG 2 cut(s) 1116, 1363
BseBI CCWGG 2 cut(s) 1190, 1626
BseCI ATCGAT 1 cut(s) 486
BseDI CCNNGG 1 cut(s) 742
BseGI GGATG 9 cut(s) 29, 289, 703, 813, 880, 956, 1185, 1367, 1693
BseLI CCNNNNNNNGG 3 cut(s) 96, 367, 1108
BseMI GCAATG 2 cut(s) 1116, 1363
BseMII CTCAG 6 cut(s) 52, 655, 812, 1276, 1664, 1671
BseNI ACTGG 4 cut(s) 117, 756, 934, 1113
BseRI GAGGAG 2 cut(s) 751, 1042
BseSI GKGCMC 1 cut(s) 124
BseXI GCAGC 3 cut(s) 223, 661, 858
BseYI CCCAGC 3 cut(s) 91, 634, 1249
BsgI GTGCAG 1 cut(s) 257
Bsh1236I CGCG 1 cut(s) 541
BshFI GGCC 5 cut(s) 100, 187, 270, 876, 1240
BshVI ATCGAT 1 cut(s) 486
BsiHKAI GWGCWC 1 cut(s) 1643
BsiSI CCGG 2 cut(s) 361, 376
BslFI GGGAC 1 cut(s) 816
BslI CCNNNNNNNGG 3 cut(s) 96, 367, 1108
BsmAI GTCTC 3 cut(s) 52, 114, 644
BsmFI GGGAC 1 cut(s) 816
BsmI GAATGC 1 cut(s) 1090
BsnI GGCC 5 cut(s) 100, 187, 270, 876, 1240
Bso31I GGTCTC 3 cut(s) 52, 114, 644
Bsp1286I GDGCHC 2 cut(s) 124, 1643
Bsp1407I TGTACA 1 cut(s) 1590
Bsp143I GATC 8 cut(s) 483, 933, 1041, 1265, 1408, 1489, 1606, 1660
BspACI CCGC 3 cut(s) 281, 311, 1337
BspANI GGCC 5 cut(s) 100, 187, 270, 876, 1240
BspCNI CTCAG 6 cut(s) 51, 654, 813, 1275, 1665, 1670
BspDI ATCGAT 1 cut(s) 486
BspFNI CGCG 1 cut(s) 541
BspLI GGNNCC 4 cut(s) 88, 155, 740, 1114
BspMAI CTGCAG 1 cut(s) 987
BspPI GGATC 2 cut(s) 941, 1036
BspQI GCTCTTC 1 cut(s) 624
BspTNI GGTCTC 3 cut(s) 52, 114, 644
BsrDI GCAATG 2 cut(s) 1116, 1363
BsrGI TGTACA 1 cut(s) 1590
BsrI ACTGG 4 cut(s) 117, 756, 934, 1113
BssECI CCNNGG 1 cut(s) 742
BssMI GATC 8 cut(s) 483, 933, 1041, 1265, 1408, 1489, 1606, 1660
BssSI CACGAG 1 cut(s) 210
BssT1I CCWWGG 1 cut(s) 742
Bst2BI CACGAG 1 cut(s) 210
Bst2UI CCWGG 2 cut(s) 1190, 1626
Bst4CI ACNGT 1 cut(s) 1618
Bst6I CTCTTC 2 cut(s) 55, 624
BstAUI TGTACA 1 cut(s) 1590
BstC8I GCNNGC 3 cut(s) 234, 272, 878
BstDEI CTNAG 8 cut(s) 38, 641, 821, 830, 1235, 1262, 1657, 1673
BstF5I GGATG 9 cut(s) 29, 289, 703, 813, 880, 956, 1185, 1367, 1693
BstFNI CGCG 1 cut(s) 541
BstHHI GCGC 2 cut(s) 232, 541
BstKTI GATC 8 cut(s) 486, 936, 1044, 1268, 1411, 1492, 1609, 1663
BstMAI GTCTC 3 cut(s) 52, 114, 644
BstMBI GATC 8 cut(s) 483, 933, 1041, 1265, 1408, 1489, 1606, 1660
BstMWI GCNNNNNNNGC 4 cut(s) 236, 877, 960, 1246
BstNI CCWGG 2 cut(s) 1190, 1626
BstSCI CCNGG 3 cut(s) 374, 1188, 1624
BstSFI CTRYAG 2 cut(s) 573, 983
BstSLI GKGCMC 1 cut(s) 124
BstUI CGCG 1 cut(s) 541
BstV1I GCAGC 3 cut(s) 223, 661, 858
BstX2I RGATCY 2 cut(s) 933, 1660
BstYI RGATCY 2 cut(s) 933, 1660
Bsu15I ATCGAT 1 cut(s) 486
BsuRI GGCC 5 cut(s) 100, 187, 270, 876, 1240
BsuTUI ATCGAT 1 cut(s) 486
BtsCI GGATG 9 cut(s) 29, 289, 703, 813, 880, 956, 1185, 1367, 1693
BtsIMutI CAGTG 1 cut(s) 124
Cac8I GCNNGC 3 cut(s) 234, 272, 878
CfoI GCGC 2 cut(s) 232, 541
ClaI ATCGAT 1 cut(s) 486
CsiI ACCWGGT 1 cut(s) 1624
Csp6I GTAC 3 cut(s) 379, 1131, 1591
CviAII CATG 4 cut(s) 475, 565, 1049, 1588
CviQI GTAC 3 cut(s) 379, 1131, 1591
DdeI CTNAG 8 cut(s) 38, 641, 821, 830, 1235, 1262, 1657, 1673
DpnI GATC 8 cut(s) 485, 935, 1043, 1267, 1410, 1491, 1608, 1662
DpnII GATC 8 cut(s) 483, 933, 1041, 1265, 1408, 1489, 1606, 1660
EaeI YGGCCR 2 cut(s) 98, 874
Eam1104I CTCTTC 2 cut(s) 55, 624
EarI CTCTTC 2 cut(s) 55, 624
Eco130I CCWWGG 1 cut(s) 742
Eco147I AGGCCT 1 cut(s) 270
Eco31I GGTCTC 3 cut(s) 52, 114, 644
Eco32I GATATC 2 cut(s) 1442, 1547
Eco57I CTGAAG 4 cut(s) 58, 426, 888, 1355
EcoRII CCWGG 2 cut(s) 1188, 1624
EcoRV GATATC 2 cut(s) 1442, 1547
EcoT14I CCWWGG 1 cut(s) 742
ErhI CCWWGG 1 cut(s) 742
FaeI CATG 4 cut(s) 478, 568, 1052, 1591
FaqI GGGAC 1 cut(s) 816
FatI CATG 4 cut(s) 474, 564, 1048, 1587
Fnu4HI GCNGC 3 cut(s) 237, 675, 847
FokI GGATG 9 cut(s) 16, 296, 710, 820, 867, 963, 1172, 1374, 1680
Fsp4HI GCNGC 3 cut(s) 237, 675, 847
FspBI CTAG 2 cut(s) 132, 1179
GlaI GCGC 2 cut(s) 231, 540
GluI GCNGC 3 cut(s) 237, 675, 847
GsaI CCCAGC 3 cut(s) 95, 638, 1253
HaeIII GGCC 5 cut(s) 100, 187, 270, 876, 1240
HapII CCGG 2 cut(s) 361, 376
HhaI GCGC 2 cut(s) 232, 541
Hin1II CATG 4 cut(s) 478, 568, 1052, 1591
Hin6I GCGC 2 cut(s) 230, 539
HinP1I GCGC 2 cut(s) 230, 539
HincII GTYRAC 1 cut(s) 1524
HindII GTYRAC 1 cut(s) 1524
HindIII AAGCTT 1 cut(s) 326
HinfI GANTC 3 cut(s) 493, 782, 788
HpaII CCGG 2 cut(s) 361, 376
HphI GGTGA 1 cut(s) 300
Hpy166II GTNNAC 3 cut(s) 1068, 1427, 1524
Hpy188III TCNNGA 6 cut(s) 481, 884, 1179, 1373, 1412, 1706
Hpy8I GTNNAC 3 cut(s) 1068, 1427, 1524
HpyAV CCTTC 4 cut(s) 450, 906, 1162, 1546
HpyCH4III ACNGT 1 cut(s) 1618
HpyF10VI GCNNNNNNNGC 4 cut(s) 236, 877, 960, 1246
HpyF3I CTNAG 8 cut(s) 38, 641, 821, 830, 1235, 1262, 1657, 1673
Hsp92II CATG 4 cut(s) 478, 568, 1052, 1591
HspAI GCGC 2 cut(s) 230, 539
Kzo9I GATC 8 cut(s) 483, 933, 1041, 1265, 1408, 1489, 1606, 1660
LguI GCTCTTC 1 cut(s) 624
LmnI GCTCC 4 cut(s) 682, 738, 1171, 1366
Lsp1109I GCAGC 3 cut(s) 223, 661, 858
LweI GCATC 5 cut(s) 38, 274, 798, 889, 941
MabI ACCWGGT 1 cut(s) 1624
MaeI CTAG 2 cut(s) 132, 1179
MaeIII GTNAC 2 cut(s) 160, 1003
MalI GATC 8 cut(s) 485, 935, 1043, 1267, 1410, 1491, 1608, 1662
MboI GATC 8 cut(s) 483, 933, 1041, 1265, 1408, 1489, 1606, 1660
MboII GAAGA 9 cut(s) 42, 452, 568, 641, 1093, 1139, 1222, 1495, 1738
MfeI CAATTG 2 cut(s) 102, 1594
MflI RGATCY 2 cut(s) 933, 1660
MhlI GDGCHC 2 cut(s) 124, 1643
MlsI TGGCCA 1 cut(s) 876
MluNI TGGCCA 1 cut(s) 876
MlyI GAGTC 1 cut(s) 502
MmeI TCCRAC 2 cut(s) 225, 705
Mox20I TGGCCA 1 cut(s) 876
MroXI GAANNNNTTC 1 cut(s) 582
MscI TGGCCA 1 cut(s) 876
MseI TTAA 6 cut(s) 399, 597, 660, 1154, 1434, 1563
MslI CAYNNNNRTG 2 cut(s) 510, 1698
Msp20I TGGCCA 1 cut(s) 876
MspI CCGG 2 cut(s) 361, 376
MspR9I CCNGG 3 cut(s) 376, 1190, 1626
MunI CAATTG 2 cut(s) 102, 1594
Mva1269I GAATGC 1 cut(s) 1090
MvaI CCWGG 2 cut(s) 1190, 1626
MvnI CGCG 1 cut(s) 541
MwoI GCNNNNNNNGC 4 cut(s) 236, 877, 960, 1246
NciI CCSGG 1 cut(s) 376
NdeII GATC 8 cut(s) 483, 933, 1041, 1265, 1408, 1489, 1606, 1660
NlaIII CATG 4 cut(s) 478, 568, 1052, 1591
NlaIV GGNNCC 4 cut(s) 88, 155, 740, 1114
NmeAIII GCCGAG 1 cut(s) 76
NmuCI GTSAC 1 cut(s) 160
PceI AGGCCT 1 cut(s) 270
PciSI GCTCTTC 1 cut(s) 624
PcsI WCGNNNNNNNCGW 2 cut(s) 208, 217
PctI GAATGC 1 cut(s) 1090
PdmI GAANNNNTTC 1 cut(s) 582
PfeI GAWTC 2 cut(s) 782, 788
PfoI TCCNGGA 1 cut(s) 1188
PkrI GCNGC 3 cut(s) 238, 676, 848
PleI GAGTC 1 cut(s) 501
PpsI GAGTC 1 cut(s) 501
PsiI TTATAA 1 cut(s) 795
Psp6I CCWGG 2 cut(s) 1188, 1624
PspFI CCCAGC 3 cut(s) 91, 634, 1249
PspGI CCWGG 2 cut(s) 1188, 1624
PspN4I GGNNCC 4 cut(s) 88, 155, 740, 1114
PstI CTGCAG 1 cut(s) 987
PsuI RGATCY 2 cut(s) 933, 1660
RsaI GTAC 3 cut(s) 380, 1132, 1592
RsaNI GTAC 3 cut(s) 379, 1131, 1591
RseI CAYNNNNRTG 2 cut(s) 510, 1698
SapI GCTCTTC 1 cut(s) 624
SaqAI TTAA 6 cut(s) 399, 597, 660, 1154, 1434, 1563
SatI GCNGC 3 cut(s) 237, 675, 847
Sau3AI GATC 8 cut(s) 483, 933, 1041, 1265, 1408, 1489, 1606, 1660
SchI GAGTC 1 cut(s) 502
ScrFI CCNGG 3 cut(s) 376, 1190, 1626
SduI GDGCHC 2 cut(s) 124, 1643
SexAI ACCWGGT 1 cut(s) 1624
SfaNI GCATC 5 cut(s) 38, 274, 798, 889, 941
SfcI CTRYAG 2 cut(s) 573, 983
SmiMI CAYNNNNRTG 2 cut(s) 510, 1698
SmlI CTYRAG 1 cut(s) 1636
SmoI CTYRAG 1 cut(s) 1636
SseBI AGGCCT 1 cut(s) 270
SsiI CCGC 3 cut(s) 281, 311, 1337
SspMI CTAG 2 cut(s) 132, 1179
StuI AGGCCT 1 cut(s) 270
StyD4I CCNGG 3 cut(s) 374, 1188, 1624
StyI CCWWGG 1 cut(s) 742
TaaI ACNGT 1 cut(s) 1618
TaqI TCGA 6 cut(s) 202, 220, 486, 586, 619, 646
TatI WGTACW 1 cut(s) 1590
TfiI GAWTC 2 cut(s) 782, 788
Tru1I TTAA 6 cut(s) 399, 597, 660, 1154, 1434, 1563
Tru9I TTAA 6 cut(s) 399, 597, 660, 1154, 1434, 1563
TscAI CASTG 1 cut(s) 124
TseFI GTSAC 1 cut(s) 160
TseI GCWGC 3 cut(s) 236, 674, 846
Tsp45I GTSAC 1 cut(s) 160
TspDTI ATGAA 9 cut(s) 78, 443, 642, 1065, 1223, 1298, 1431, 1496, 1576
TspGWI ACGGA 1 cut(s) 820
TspRI CASTG 1 cut(s) 124
XapI RAATTY 4 cut(s) 55, 944, 1010, 1734
XbaI TCTAGA 1 cut(s) 1178
XmnI GAANNNNTTC 1 cut(s) 582
XspI CTAG 2 cut(s) 132, 1179
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.