Rh3DG257400
ERF Family

mTERF

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0001228
Physical Location & Seq
Forward (+)
25506935 .. 25508689
1755 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG257400.1

Sequence Viewer

Length: 1755 bp
ATGACCCATTTGCATAGCCTCAGAAATGCATCTATTCTCAAATGGGTTTCTTCAAATATTGCTCAAAACCACCTTAGATCATCAAGAACCCCACTTCAGCCAATTGGGTCTTTCCCCAATTCTCATGCCATCAGGCTTTACGGTACCAAAACAGCTCTTGAAGCTGAAAACCCTGAAAACTTGGATATAACTTCGACTTCTAGTGGAAAAACTAGAGTAATTCGAAAAGAAGCCCAGGCTGCATTGTTGGAGTATTTGCACTGTACTAGGGGCTTGCAGTTCATGGATGCAGAGAATATGAGTAAAAACTCCCCGCAGTTTCTCAACAAGCTTTTAAGAAGTGTTGATGGTGAAATTGATAATGAAATTGGGGGCTTGATTTCCCGGTATTTGAGGTACCACCCCATTAATGAATTTGAGCCTTTCTTTGAGAGCTTGGGATTAAAACCTTCAGAGTATATCCCCCGTCTTCCTCGGAATTTGATGTTCTTGACCGATGATGGTTTGTTGCTTCACAATTATACTGTTTTGTGTAGTTATGGGGTTTCACGTAGCAAGATAGGAAAGATTTATAAAGAAGCAACAGAAGTGTTTCGATATGATTTTGAGGTGTTGCTATCAAAACTTCAGGCTTATGAAGAACTAGGTCTCAGCCAATTTGCTTTAGTTAAGTTTATTGTTTGCAGCCCTTATATTTTAGTTGGGGATGTACATGTGCCATTTGTTAAGGTACTAGAAAAGTTGAAGAGTTTGGGGTTTGAGACCTTTTGGATTGAAAGGAATTTATCAGAAGAGAATATTTATAGTTGGAGCCGGATGCTTGAAGTGCTAAGGTTGTTTAATGAGATGGGTTGCAGCAACGTGCAGTTGGTTGAATTACTTGGCCAGCATCCGGATATTTTATTTGAGAGTTCAGGAGAAACGACAGTGCTGTTAATTGGGTTCTTACTGAAGTTTGGATCCACAAGGAGCCAAATATGTTCAATGTTTCTGCAGTTTCCACAAATTCAGATTATGCAATTTGTTCTGAATTTGAGGAAATGTGTTTTGGTCCTAAATGAGATTGAGATGGAGGTTGCAGAGATTCAGAAGATTGTTTGTTCACATCCCCTGCTACTGGGTTCGTGTGCTCTGAAAAGCACTAACAGCTTACTTTCTTACTTGAAGATTGGGAAGAAGCGTCTGTCTAGGTACATACAGGAGAACCCTGAAGCATTAAAGAAATGGGTTCTAGGTAGAAGAGTTGAGCCACTTCCAGACTCGGAAGAGGACTCAAAGGGAAAGAGAATTAAGTTCTTGTTAGACATAGGATTTGTAGAGAACTCGAACAAAATGAAAGAAGCACTAAAGCTATTTCGAGGCAAGGGAGGGGAACTTCAAGACAGATTTGATTGTATAGTGAATGCTGGTTTAAATCGCCAGGATGTCTGTAAAATGATTAAAGTATCCCCTCAAATTCTTAACCAGAAAAGGCATGTGTTACAAATGAAGATTGATGTTCTTGTAAATCATCTGGGTTATCCTGTATCATCTTTGGTGAACTTCCCATCATATCTATCCTATACAACTCAAAGGGTCAAGCTCAGAGTATTCATGTACAATTGGCTCACTGGTCAAGGAACAATAGCCCCTACACTTGCCTTGAGCACTGTCGTTGCAATGGCGGAGAAAACATTTATATCGCAATATGTAAATCATCATCCTTGTGGTCCTCAAGTTTGGCAGGAATTGAAGGGTAAAATGTATTCTTTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
mTERF

Protein Analysis

584

Amino Acids

66.71

Weight (kDa)

9.01

Isoelectric Point (pI)

43.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
mTERF PF02536 277 - 440 1.4e-09 mTERF
mTERF PF02536 450 - 559 4e-13 mTERF
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 573, 1753
Acc65I GGTACC 2 cut(s) 143, 396
AccB1I GGYRCC 2 cut(s) 143, 396
AccIII TCCGGA 1 cut(s) 892
AciI CCGC 2 cut(s) 314, 1664
AclWI GGATC 2 cut(s) 954, 967
AcoI YGGCCR 1 cut(s) 883
AcsI RAATTY 6 cut(s) 413, 478, 781, 1005, 1030, 1455
AcuI CTGAAG 5 cut(s) 80, 435, 611, 971, 1230
AfaI GTAC 7 cut(s) 145, 265, 398, 711, 732, 1193, 1598
AfiI CCNNNNNNNGG 2 cut(s) 892, 1117
AflIII ACRYGT 1 cut(s) 712
AjnI CCWGG 2 cut(s) 234, 1419
AjuI GAANNNNNNNTTGG 2 cut(s) 1031, 1063
AluBI AGCT 7 cut(s) 155, 164, 331, 435, 1149, 1351, 1582
AluI AGCT 7 cut(s) 155, 164, 331, 435, 1149, 1351, 1582
Alw21I GWGCWC 2 cut(s) 1132, 1649
Alw26I GTCTC 2 cut(s) 653, 755
AlwI GGATC 2 cut(s) 954, 967
Aor13HI TCCGGA 1 cut(s) 892
AoxI GGCC 1 cut(s) 883
ApeKI GCWGC 3 cut(s) 239, 684, 855
ApoI RAATTY 6 cut(s) 413, 478, 781, 1005, 1030, 1455
ArsI GACNNNNNNTTYG 2 cut(s) 1295, 1327
AseI ATTAAT 1 cut(s) 408
Asp700I GAANNNNTTC 1 cut(s) 591
Asp718I GGTACC 2 cut(s) 143, 396
AspS9I GGNCC 2 cut(s) 1051, 1709
AsuC2I CCSGG 1 cut(s) 385
AsuHPI GGTGA 2 cut(s) 362, 1549
AsuII TTCGAA 1 cut(s) 223
AvaII GGWCC 2 cut(s) 1051, 1709
BalI TGGCCA 1 cut(s) 885
BamHI GGATCC 1 cut(s) 959
BanI GGYRCC 2 cut(s) 143, 396
BbsI GAAGAC 1 cut(s) 461
Bbv12I GWGCWC 2 cut(s) 1132, 1649
BbvI GCAGC 3 cut(s) 226, 696, 867
BccI CCATC 6 cut(s) 137, 341, 494, 841, 1063, 1555
BciT130I CCWGG 2 cut(s) 236, 1421
BciVI GTATCC 1 cut(s) 1456
BcnI CCSGG 1 cut(s) 385
BcoDI GTCTC 2 cut(s) 653, 755
BfaI CTAG 7 cut(s) 201, 213, 267, 644, 734, 1188, 1232
BfmI CTRYAG 1 cut(s) 992
BfuI GTATCC 1 cut(s) 1456
BisI GCNGC 3 cut(s) 240, 685, 856
BlsI GCNGC 3 cut(s) 241, 686, 857
Bme1390I CCNGG 3 cut(s) 236, 385, 1421
Bme18I GGWCC 2 cut(s) 1051, 1709
BmgT120I GGNCC 2 cut(s) 1051, 1709
BmiI GGNNCC 5 cut(s) 145, 398, 812, 961, 971
BmrFI CCNGG 3 cut(s) 236, 385, 1421
BmrI ACTGGG 1 cut(s) 1127
BmsI GCATC 4 cut(s) 38, 277, 807, 898
BmuI ACTGGG 1 cut(s) 1127
BpiI GAAGAC 1 cut(s) 461
Bpu10I CCTNAGC 1 cut(s) 830
Bpu14I TTCGAA 1 cut(s) 223
BpuEI CTTGAG 2 cut(s) 1663, 1698
BpuMI CCSGG 1 cut(s) 385
BsaAI YACGTR 1 cut(s) 551
BsaI GGTCTC 2 cut(s) 653, 755
BsaJI CCNNGG 2 cut(s) 234, 473
BsaWI WCCGGW 1 cut(s) 892
Bsc4I CCNNNNNNNGG 2 cut(s) 892, 1117
Bse1I ACTGG 2 cut(s) 1122, 1615
Bse3DI GCAATG 1 cut(s) 1665
BseAI TCCGGA 1 cut(s) 892
BseBI CCWGG 2 cut(s) 236, 1421
BseDI CCNNGG 2 cut(s) 234, 473
BseGI GGATG 7 cut(s) 292, 712, 822, 889, 1105, 1429, 1699
BseLI CCNNNNNNNGG 2 cut(s) 892, 1117
BseMI GCAATG 1 cut(s) 1665
BseMII CTCAG 3 cut(s) 34, 664, 1597
BseNI ACTGG 2 cut(s) 1122, 1615
BseXI GCAGC 3 cut(s) 226, 696, 867
BsgI GTGCAG 1 cut(s) 884
BshFI GGCC 1 cut(s) 885
BshNI GGYRCC 2 cut(s) 143, 396
BsiHKAI GWGCWC 2 cut(s) 1132, 1649
BsiSI CCGG 3 cut(s) 385, 814, 893
BslI CCNNNNNNNGG 2 cut(s) 892, 1117
BsmAI GTCTC 2 cut(s) 653, 755
BsmI GAATGC 1 cut(s) 1408
BsnI GGCC 1 cut(s) 885
Bso31I GGTCTC 2 cut(s) 653, 755
Bsp119I TTCGAA 1 cut(s) 223
Bsp1286I GDGCHC 2 cut(s) 1132, 1649
Bsp13I TCCGGA 1 cut(s) 892
Bsp1407I TGTACA 2 cut(s) 709, 1596
Bsp143I GATC 2 cut(s) 77, 959
BspACI CCGC 2 cut(s) 314, 1664
BspANI GGCC 1 cut(s) 885
BspCNI CTCAG 3 cut(s) 33, 663, 1596
BspEI TCCGGA 1 cut(s) 892
BspLI GGNNCC 5 cut(s) 145, 398, 812, 961, 971
BspMAI CTGCAG 1 cut(s) 996
BspPI GGATC 2 cut(s) 954, 967
BspT104I TTCGAA 1 cut(s) 223
BspT107I GGYRCC 2 cut(s) 143, 396
BspTNI GGTCTC 2 cut(s) 653, 755
BsrDI GCAATG 1 cut(s) 1665
BsrGI TGTACA 2 cut(s) 709, 1596
BsrI ACTGG 2 cut(s) 1122, 1615
BssECI CCNNGG 2 cut(s) 234, 473
BssMI GATC 2 cut(s) 77, 959
Bst2UI CCWGG 2 cut(s) 236, 1421
Bst4CI ACNGT 5 cut(s) 143, 263, 526, 928, 1651
Bst6I CTCTTC 4 cut(s) 740, 786, 1234, 1260
BstAUI TGTACA 2 cut(s) 709, 1596
BstBAI YACGTR 1 cut(s) 551
BstBI TTCGAA 1 cut(s) 223
BstC8I GCNNGC 2 cut(s) 275, 887
BstDEI CTNAG 5 cut(s) 20, 74, 650, 830, 1583
BstF5I GGATG 7 cut(s) 292, 712, 822, 889, 1105, 1429, 1699
BstKTI GATC 2 cut(s) 80, 962
BstMAI GTCTC 2 cut(s) 653, 755
BstMBI GATC 2 cut(s) 77, 959
BstMWI GCNNNNNNNGC 4 cut(s) 161, 239, 826, 1146
BstNI CCWGG 2 cut(s) 236, 1421
BstNSI RCATGY 2 cut(s) 716, 1478
BstSCI CCNGG 3 cut(s) 234, 383, 1419
BstSFI CTRYAG 1 cut(s) 992
BstV1I GCAGC 3 cut(s) 226, 696, 867
BstV2I GAAGAC 1 cut(s) 461
BstX2I RGATCY 1 cut(s) 959
BstYI RGATCY 1 cut(s) 959
BsuI GTATCC 1 cut(s) 1456
BsuRI GGCC 1 cut(s) 885
BtsCI GGATG 7 cut(s) 292, 712, 822, 889, 1105, 1429, 1699
BtsIMutI CAGTG 4 cut(s) 259, 933, 1608, 1647
Cac8I GCNNGC 2 cut(s) 275, 887
Cfr13I GGNCC 2 cut(s) 1051, 1709
CseI GACGC 1 cut(s) 1169
Csp6I GTAC 7 cut(s) 144, 264, 397, 710, 731, 1192, 1597
CviAII CATG 5 cut(s) 125, 283, 713, 1475, 1594
CviQI GTAC 7 cut(s) 144, 264, 397, 710, 731, 1192, 1597
DdeI CTNAG 5 cut(s) 20, 74, 650, 830, 1583
DpnI GATC 2 cut(s) 79, 961
DpnII GATC 2 cut(s) 77, 959
DraI TTTAAA 1 cut(s) 1413
EaeI YGGCCR 1 cut(s) 883
Eam1104I CTCTTC 4 cut(s) 740, 786, 1234, 1260
EarI CTCTTC 4 cut(s) 740, 786, 1234, 1260
EciI GGCGGA 1 cut(s) 1679
Eco31I GGTCTC 2 cut(s) 653, 755
Eco47I GGWCC 2 cut(s) 1051, 1709
Eco57I CTGAAG 5 cut(s) 80, 435, 611, 971, 1230
EcoRII CCWGG 2 cut(s) 234, 1419
EcoT22I ATGCAT 1 cut(s) 31
FaeI CATG 5 cut(s) 128, 286, 716, 1478, 1597
FatI CATG 5 cut(s) 124, 282, 712, 1474, 1593
FauI CCCGC 1 cut(s) 321
Fnu4HI GCNGC 3 cut(s) 240, 685, 856
FokI GGATG 7 cut(s) 299, 719, 829, 876, 1092, 1436, 1686
Fsp4HI GCNGC 3 cut(s) 240, 685, 856
FspBI CTAG 7 cut(s) 201, 213, 267, 644, 734, 1188, 1232
GluI GCNGC 3 cut(s) 240, 685, 856
HaeIII GGCC 1 cut(s) 885
HapII CCGG 3 cut(s) 385, 814, 893
HgaI GACGC 1 cut(s) 1169
Hin1II CATG 5 cut(s) 128, 286, 716, 1478, 1597
HindIII AAGCTT 1 cut(s) 329
HinfI GANTC 3 cut(s) 1084, 1259, 1271
HpaII CCGG 3 cut(s) 385, 814, 893
HphI GGTGA 2 cut(s) 362, 1549
Hpy166II GTNNAC 2 cut(s) 1103, 1540
Hpy188III TCNNGA 7 cut(s) 84, 158, 490, 893, 915, 1256, 1379
Hpy8I GTNNAC 2 cut(s) 1103, 1540
HpyAV CCTTC 2 cut(s) 459, 1726
HpyCH4III ACNGT 5 cut(s) 143, 263, 526, 928, 1651
HpyCH4IV ACGT 2 cut(s) 550, 861
HpyF10VI GCNNNNNNNGC 4 cut(s) 161, 239, 826, 1146
HpyF3I CTNAG 5 cut(s) 20, 74, 650, 830, 1583
HpySE526I ACGT 2 cut(s) 550, 861
Hsp92II CATG 5 cut(s) 128, 286, 716, 1478, 1597
Kpn2I TCCGGA 1 cut(s) 892
KpnI GGTACC 2 cut(s) 147, 400
Kzo9I GATC 2 cut(s) 77, 959
LmnI GCTCC 2 cut(s) 810, 969
Lsp1109I GCAGC 3 cut(s) 226, 696, 867
LweI GCATC 4 cut(s) 38, 277, 807, 898
MaeI CTAG 7 cut(s) 201, 213, 267, 644, 734, 1188, 1232
MaeII ACGT 2 cut(s) 550, 861
MaeIII GTNAC 1 cut(s) 1479
MalI GATC 2 cut(s) 79, 961
MboI GATC 2 cut(s) 77, 959
MfeI CAATTG 2 cut(s) 102, 1600
MflI RGATCY 1 cut(s) 959
MhlI GDGCHC 2 cut(s) 1132, 1649
MlsI TGGCCA 1 cut(s) 885
MluNI TGGCCA 1 cut(s) 885
MlyI GAGTC 2 cut(s) 1253, 1265
MmeI TCCRAC 2 cut(s) 228, 788
Mox20I TGGCCA 1 cut(s) 885
Mph1103I ATGCAT 1 cut(s) 31
MroI TCCGGA 1 cut(s) 892
MroXI GAANNNNTTC 1 cut(s) 591
MscI TGGCCA 1 cut(s) 885
MslI CAYNNNNRTG 1 cut(s) 1704
Msp20I TGGCCA 1 cut(s) 885
MspI CCGG 3 cut(s) 385, 814, 893
MspR9I CCNGG 3 cut(s) 236, 385, 1421
MunI CAATTG 2 cut(s) 102, 1600
Mva1269I GAATGC 1 cut(s) 1408
MvaI CCWGG 2 cut(s) 236, 1421
MwoI GCNNNNNNNGC 4 cut(s) 161, 239, 826, 1146
NciI CCSGG 1 cut(s) 385
NdeII GATC 2 cut(s) 77, 959
NlaIII CATG 5 cut(s) 128, 286, 716, 1478, 1597
NlaIV GGNNCC 5 cut(s) 145, 398, 812, 961, 971
NsiI ATGCAT 1 cut(s) 31
NspI RCATGY 2 cut(s) 716, 1478
NspV TTCGAA 1 cut(s) 223
PciI ACATGT 1 cut(s) 712
PctI GAATGC 1 cut(s) 1408
PdmI GAANNNNTTC 1 cut(s) 591
PfeI GAWTC 1 cut(s) 1084
PkrI GCNGC 3 cut(s) 241, 686, 857
PleI GAGTC 2 cut(s) 1253, 1265
PpsI GAGTC 2 cut(s) 1253, 1265
Ppu21I YACGTR 1 cut(s) 551
PscI ACATGT 1 cut(s) 712
PshBI ATTAAT 1 cut(s) 408
PsiI TTATAA 2 cut(s) 573, 1753
Psp6I CCWGG 2 cut(s) 234, 1419
PspGI CCWGG 2 cut(s) 234, 1419
PspN4I GGNNCC 5 cut(s) 145, 398, 812, 961, 971
PspPI GGNCC 2 cut(s) 1051, 1709
PstI CTGCAG 1 cut(s) 996
PsuI RGATCY 1 cut(s) 959
RsaI GTAC 7 cut(s) 145, 265, 398, 711, 732, 1193, 1598
RsaNI GTAC 7 cut(s) 144, 264, 397, 710, 731, 1192, 1597
RseI CAYNNNNRTG 1 cut(s) 1704
SatI GCNGC 3 cut(s) 240, 685, 856
Sau3AI GATC 2 cut(s) 77, 959
Sau96I GGNCC 2 cut(s) 1051, 1709
SchI GAGTC 2 cut(s) 1253, 1265
ScrFI CCNGG 3 cut(s) 236, 385, 1421
SduI GDGCHC 2 cut(s) 1132, 1649
SfaNI GCATC 4 cut(s) 38, 277, 807, 898
SfcI CTRYAG 1 cut(s) 992
SfuI TTCGAA 1 cut(s) 223
SinI GGWCC 2 cut(s) 1051, 1709
SmiMI CAYNNNNRTG 1 cut(s) 1704
SmlI CTYRAG 2 cut(s) 1642, 1713
SmoI CTYRAG 2 cut(s) 1642, 1713
SsiI CCGC 2 cut(s) 314, 1664
SspI AATATT 2 cut(s) 58, 799
SspMI CTAG 7 cut(s) 201, 213, 267, 644, 734, 1188, 1232
StyD4I CCNGG 3 cut(s) 234, 383, 1419
TaaI ACNGT 5 cut(s) 143, 263, 526, 928, 1651
TaiI ACGT 2 cut(s) 553, 864
TaqI TCGA 5 cut(s) 194, 223, 595, 1325, 1357
TaqII GACCGA 1 cut(s) 509
TatI WGTACW 3 cut(s) 263, 709, 1596
TfiI GAWTC 1 cut(s) 1084
TscAI CASTG 4 cut(s) 266, 933, 1615, 1654
TseI GCWGC 3 cut(s) 239, 684, 855
TspDTI ATGAA 7 cut(s) 271, 378, 426, 651, 1349, 1502, 1582
TspRI CASTG 4 cut(s) 266, 933, 1615, 1654
VpaK11BI GGWCC 2 cut(s) 1051, 1709
VspI ATTAAT 1 cut(s) 408
XapI RAATTY 6 cut(s) 413, 478, 781, 1005, 1030, 1455
XceI RCATGY 2 cut(s) 716, 1478
XmnI GAANNNNTTC 1 cut(s) 591
XspI CTAG 7 cut(s) 201, 213, 267, 644, 734, 1188, 1232
Zsp2I ATGCAT 1 cut(s) 31
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.