Rh3DG257900
ERF Family

mTERF

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
Physical Location & Seq
Forward (+)
25530495 .. 25532267
1773 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG257900.1

Sequence Viewer

Length: 1773 bp
ATGACCCATATGCAAAAACTCAGGATAGCATCTATTCCCAGCTGGGTTTCTACTATTTTTCATGAAAATCACCTTAGATCACCAAGAACCCTATTTCAGCCAATTGGGGTTTTCCCCAATGTCCAAATCCCTAAAGTTTACAGCACAAAAATGGCCCCTGAAATTGAAAACCATGAAGTTTTGGTTGAAACTTCGACTGCTAAGGGCAGAAGTGCTACTCGAACTCTTCGTTACATTCAAAAAGAAACGCAGGCTGCATTGTTGGAGTATTTGCACAGTACTAGAGGCTTACATTTCACTGATGCTGAGAATATTAGTAAAAACTGCCCACATTTTCTAGACAAGCTTTTTCAAAGGGCTGATTGTGAGAGAGAGATTAGGCGGTCGATTGCTCGGTTCTTGCGGTACCACCCTATTAATGAATTTGAACCCTTCTTTGAGAGCTTGGGTTTGAAACCTTCCGAGTATGTTTCTCTTCTTCCACGCAATTTGATGTATTTGACTGATGATGAGTTGTTGCTTCATAATTATACTGTTTTATCTAATTATGGGATTCCGCCGAATAAGATAGGAAAGATTTACAGGGAAGCAACAGAGGTCTTTCAATATGATTTTCAGGTTTTGGCATCAAAACTTCAAGCTTATGAAGAACTAGGTCTTAGCCGTTCTGCTTTAGTTCGCTATGTTGTTGGTAGTCCTTATCTTTTGGTTGGGGATGTCAATGCAGTATTTGTTTCAGTATTGGAAAAATTGAAGAGTATTGGATTTGAAACCAATAGGATTGAGGGGAATCTATGGGAAGATAACACTTATTATTGGAGCCGGATGCTTGAAGTTTTGAGTTTGTTTAGTGAGATGGGTTGCAGTGATGAGCAGTTGGGCAAGCTACTTCGTCACAACCCAGATATTTTATTTGAAAGTTCAGGGGAAATGACAGTTTCACTGATTGGGTTGTTACAAAAATTTGGATTTACGAAGAGAGAGTTATGTTCAATGTTTCTACAATTTCCGCAGATTCCAGTAGCAAAATTTGTTGCAAATTTGAGACGGTGCATTCTGTTCCTGGATGAGATTGACATGAAGGCTGCAGAGATTGGGAAGATTGTTCATTCTCACCCCCTGCTACTGGGTTCGTGCTCTTTGAAAAAAACTAGCAGCTTACTTTGTACTTTGAATGTTGGGAAGAAACGATTGTCTCAATACATCCAGGAGAACCCACAAGAGCTAAAGAATTGGGTTTGGGGTAGAAAAATTGAGTCATTTCCAGATTCAGGAGATGAAGTTAGATCAAGGGCTGAAAGGACTAAGTTCTTGTTAGACATAGGATTTGTAGAAAACTCCAGCAAAATGAAAGCAGCGCTGAAGGCATGTCGAGGCAATGGAGAGGAGCTTCAGGAAAGATTTGATTGCATAGTAAAAGCTGGTTTGGATCGGAAGGATGTCTGTGAACTGATTCAATCATGCCCTCAAAATCTTAACCAGACAACGGATGTGATTGAAATGAAGATCGACTGTCTTGTAAATGAATTGGGTTATCCCATATCGTCCTTGTTGACTGCCACAAGATATCTTTCCCATAAAATGGAAAGGGTCAAGCTTAGGGTACGCATGTTCAATTGGCTCAAAGATCATGGAATAGCTGCTCCTGGGCTTTCCTTGAGCACTCTTATTTCTTGCTCAGATAGTTATTTTATAAAGACTTATGTACATCGTCATCCTGCTGGTCCTCAAGTTTGGCACGATTTGAAGAATGAAATTGAATCCAATTGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

590

Amino Acids

67.71

Weight (kDa)

8.26

Isoelectric Point (pI)

43.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
mTERF PF02536 280 - 444 3.2e-13 mTERF
mTERF PF02536 462 - 564 4.1e-12 mTERF
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1694
Acc65I GGTACC 1 cut(s) 405
AccB1I GGYRCC 1 cut(s) 405
AccB7I CCANNNNNTGG 1 cut(s) 1582
AciI CCGC 4 cut(s) 382, 403, 557, 1010
AclWI GGATC 1 cut(s) 1437
AcsI RAATTY 4 cut(s) 422, 962, 1028, 1039
AcuI CTGAAG 2 cut(s) 1376, 1382
AfaI GTAC 5 cut(s) 280, 407, 1168, 1605, 1707
AfeI AGCGCT 1 cut(s) 1359
AfiI CCNNNNNNNGG 4 cut(s) 1126, 1271, 1486, 1582
AjnI CCWGG 3 cut(s) 1062, 1206, 1645
Alw21I GWGCWC 2 cut(s) 1139, 1664
Alw26I GTCTC 2 cut(s) 1039, 1200
AlwI GGATC 1 cut(s) 1437
Aor51HI AGCGCT 1 cut(s) 1359
AoxI GGCC 1 cut(s) 153
ApeKI GCWGC 5 cut(s) 254, 1085, 1155, 1355, 1640
ApoI RAATTY 4 cut(s) 422, 962, 1028, 1039
ArsI GACNNNNNNTTYG 2 cut(s) 1310, 1342
AseI ATTAAT 1 cut(s) 417
Asp700I GAANNNNTTC 1 cut(s) 1452
Asp718I GGTACC 1 cut(s) 405
AspLEI GCGC 1 cut(s) 1360
AspS9I GGNCC 2 cut(s) 154, 1724
AsuHPI GGTGA 3 cut(s) 62, 72, 1106
AvaII GGWCC 1 cut(s) 1724
BaeI ACNNNNGTAYC 2 cut(s) 1595, 1628
BanI GGYRCC 1 cut(s) 405
Bbv12I GWGCWC 2 cut(s) 1139, 1664
BbvI GCAGC 5 cut(s) 241, 1072, 1167, 1367, 1627
BccI CCATC 1 cut(s) 850
BceAI ACGGC 1 cut(s) 648
BciT130I CCWGG 3 cut(s) 1064, 1208, 1647
BcoDI GTCTC 2 cut(s) 1039, 1200
BfaI CTAG 4 cut(s) 282, 338, 653, 1152
BfmI CTRYAG 1 cut(s) 1086
BfoI RGCGCY 1 cut(s) 1361
BisI GCNGC 5 cut(s) 255, 1086, 1156, 1356, 1641
BlsI GCNGC 5 cut(s) 256, 1087, 1157, 1357, 1642
BmcAI AGTACT 1 cut(s) 280
Bme1390I CCNGG 3 cut(s) 1064, 1208, 1647
Bme18I GGWCC 1 cut(s) 1724
BmgT120I GGNCC 2 cut(s) 154, 1724
BmiI GGNNCC 3 cut(s) 156, 407, 821
BmrFI CCNGG 3 cut(s) 1064, 1208, 1647
BmrI ACTGGG 1 cut(s) 1136
BmsI GCATC 4 cut(s) 38, 292, 635, 816
BmuI ACTGGG 1 cut(s) 1136
BpmI CTGGAG 1 cut(s) 1324
Bpu10I CCTNAGC 2 cut(s) 201, 1598
BpuEI CTTGAG 2 cut(s) 1678, 1713
BsaJI CCNNGG 1 cut(s) 1646
BsaXI ACNNNNNCTCC 2 cut(s) 1266, 1296
Bsc4I CCNNNNNNNGG 4 cut(s) 1126, 1271, 1486, 1582
Bse1I ACTGG 2 cut(s) 1019, 1131
Bse3DI GCAATG 1 cut(s) 1384
BseBI CCWGG 3 cut(s) 1064, 1208, 1647
BseDI CCNNGG 1 cut(s) 1646
BseGI GGATG 7 cut(s) 721, 831, 1072, 1203, 1444, 1495, 1714
BseLI CCNNNNNNNGG 4 cut(s) 1126, 1271, 1486, 1582
BseMI GCAATG 1 cut(s) 1384
BseMII CTCAG 3 cut(s) 34, 297, 1692
BseNI ACTGG 2 cut(s) 1019, 1131
BseRI GAGGAG 1 cut(s) 1400
BseXI GCAGC 5 cut(s) 241, 1072, 1167, 1367, 1627
BseYI CCCAGC 2 cut(s) 38, 42
Bsh1285I CGRYCG 1 cut(s) 386
BshFI GGCC 1 cut(s) 155
BshNI GGYRCC 1 cut(s) 405
BsiEI CGRYCG 1 cut(s) 386
BsiHKAI GWGCWC 2 cut(s) 1139, 1664
BsiSI CCGG 1 cut(s) 823
BslI CCNNNNNNNGG 4 cut(s) 1126, 1271, 1486, 1582
BsmAI GTCTC 2 cut(s) 1039, 1200
BsmBI CGTCTC 1 cut(s) 1039
BsmI GAATGC 1 cut(s) 1053
BsnI GGCC 1 cut(s) 155
Bsp1286I GDGCHC 2 cut(s) 1139, 1664
Bsp1407I TGTACA 1 cut(s) 1705
Bsp143I GATC 5 cut(s) 77, 1286, 1429, 1506, 1627
BspACI CCGC 4 cut(s) 382, 403, 557, 1010
BspANI GGCC 1 cut(s) 155
BspCNI CTCAG 3 cut(s) 33, 298, 1691
BspHI TCATGA 1 cut(s) 61
BspLI GGNNCC 3 cut(s) 156, 407, 821
BspMAI CTGCAG 1 cut(s) 1090
BspPI GGATC 1 cut(s) 1437
BspT107I GGYRCC 1 cut(s) 405
BsrDI GCAATG 1 cut(s) 1384
BsrGI TGTACA 1 cut(s) 1705
BsrI ACTGG 2 cut(s) 1019, 1131
BssECI CCNNGG 1 cut(s) 1646
BssMI GATC 5 cut(s) 77, 1286, 1429, 1506, 1627
Bst2UI CCWGG 3 cut(s) 1064, 1208, 1647
Bst4CI ACNGT 5 cut(s) 278, 535, 937, 1050, 1514
Bst6I CTCTTC 4 cut(s) 231, 480, 749, 971
BstAUI TGTACA 1 cut(s) 1705
BstC8I GCNNGC 2 cut(s) 252, 884
BstDEI CTNAG 8 cut(s) 20, 74, 201, 306, 659, 1305, 1598, 1678
BstF5I GGATG 7 cut(s) 721, 831, 1072, 1203, 1444, 1495, 1714
BstH2I RGCGCY 1 cut(s) 1361
BstHHI GCGC 1 cut(s) 1360
BstKTI GATC 5 cut(s) 80, 1289, 1432, 1509, 1630
BstMAI GTCTC 2 cut(s) 1039, 1200
BstMBI GATC 5 cut(s) 77, 1286, 1429, 1506, 1627
BstMCI CGRYCG 1 cut(s) 386
BstMWI GCNNNNNNNGC 1 cut(s) 1364
BstNI CCWGG 3 cut(s) 1064, 1208, 1647
BstNSI RCATGY 2 cut(s) 1371, 1612
BstSCI CCNGG 3 cut(s) 1062, 1206, 1645
BstSFI CTRYAG 1 cut(s) 1086
BstV1I GCAGC 5 cut(s) 241, 1072, 1167, 1367, 1627
BsuRI GGCC 1 cut(s) 155
BtsCI GGATG 7 cut(s) 721, 831, 1072, 1203, 1444, 1495, 1714
BtsI GCAGTG 1 cut(s) 871
BtsIMutI CAGTG 3 cut(s) 297, 871, 941
Cac8I GCNNGC 2 cut(s) 252, 884
CciI TCATGA 1 cut(s) 61
CfoI GCGC 1 cut(s) 1360
Cfr13I GGNCC 2 cut(s) 154, 1724
Csp6I GTAC 5 cut(s) 279, 406, 1167, 1604, 1706
CspCI CAANNNNNGTGG 2 cut(s) 471, 506
CviAII CATG 7 cut(s) 62, 173, 1078, 1368, 1461, 1609, 1631
CviQI GTAC 5 cut(s) 279, 406, 1167, 1604, 1706
DdeI CTNAG 8 cut(s) 20, 74, 201, 306, 659, 1305, 1598, 1678
DpnI GATC 5 cut(s) 79, 1288, 1431, 1508, 1629
DpnII GATC 5 cut(s) 77, 1286, 1429, 1506, 1627
Eam1104I CTCTTC 4 cut(s) 231, 480, 749, 971
EarI CTCTTC 4 cut(s) 231, 480, 749, 971
EciI GGCGGA 1 cut(s) 546
Eco32I GATATC 1 cut(s) 1568
Eco47I GGWCC 1 cut(s) 1724
Eco47III AGCGCT 1 cut(s) 1359
Eco57I CTGAAG 2 cut(s) 1376, 1382
EcoRII CCWGG 3 cut(s) 1062, 1206, 1645
EcoRV GATATC 1 cut(s) 1568
Esp3I CGTCTC 1 cut(s) 1039
FaeI CATG 7 cut(s) 65, 176, 1081, 1371, 1464, 1612, 1634
FatI CATG 7 cut(s) 61, 172, 1077, 1367, 1460, 1608, 1630
FauNDI CATATG 1 cut(s) 9
Fnu4HI GCNGC 5 cut(s) 255, 1086, 1156, 1356, 1641
FokI GGATG 7 cut(s) 728, 838, 1079, 1190, 1451, 1502, 1701
Fsp4HI GCNGC 5 cut(s) 255, 1086, 1156, 1356, 1641
FspBI CTAG 4 cut(s) 282, 338, 653, 1152
GlaI GCGC 1 cut(s) 1359
GluI GCNGC 5 cut(s) 255, 1086, 1156, 1356, 1641
GsaI CCCAGC 2 cut(s) 42, 46
GsuI CTGGAG 1 cut(s) 1324
HaeII RGCGCY 1 cut(s) 1361
HaeIII GGCC 1 cut(s) 155
HapII CCGG 1 cut(s) 823
HhaI GCGC 1 cut(s) 1360
Hin1II CATG 7 cut(s) 65, 176, 1081, 1371, 1464, 1612, 1634
Hin6I GCGC 1 cut(s) 1358
HinP1I GCGC 1 cut(s) 1358
HincII GTYRAC 1 cut(s) 1554
HindII GTYRAC 1 cut(s) 1554
HindIII AAGCTT 3 cut(s) 344, 639, 1595
HinfI GANTC 7 cut(s) 553, 790, 1015, 1256, 1268, 1453, 1760
HpaII CCGG 1 cut(s) 823
HphI GGTGA 3 cut(s) 62, 72, 1106
Hpy166II GTNNAC 3 cut(s) 139, 1448, 1554
Hpy188I TCNGA 3 cut(s) 463, 1434, 1681
Hpy188III TCNNGA 6 cut(s) 22, 62, 338, 1265, 1272, 1394
Hpy8I GTNNAC 3 cut(s) 139, 1448, 1554
HpyAV CCTTC 5 cut(s) 442, 468, 1075, 1357, 1429
HpyCH4III ACNGT 5 cut(s) 278, 535, 937, 1050, 1514
HpyCH4V TGCA 9 cut(s) 13, 257, 274, 725, 864, 1037, 1053, 1088, 1410
HpyF10VI GCNNNNNNNGC 1 cut(s) 1364
HpyF3I CTNAG 8 cut(s) 20, 74, 201, 306, 659, 1305, 1598, 1678
Hsp92II CATG 7 cut(s) 65, 176, 1081, 1371, 1464, 1612, 1634
HspAI GCGC 1 cut(s) 1358
KpnI GGTACC 1 cut(s) 409
Kzo9I GATC 5 cut(s) 77, 1286, 1429, 1506, 1627
LmnI GCTCC 3 cut(s) 819, 1387, 1648
Lsp1109I GCAGC 5 cut(s) 241, 1072, 1167, 1367, 1627
LweI GCATC 4 cut(s) 38, 292, 635, 816
MaeI CTAG 4 cut(s) 282, 338, 653, 1152
MaeIII GTNAC 3 cut(s) 230, 893, 954
MalI GATC 5 cut(s) 79, 1288, 1431, 1508, 1629
MboI GATC 5 cut(s) 77, 1286, 1429, 1506, 1627
MfeI CAATTG 3 cut(s) 102, 1615, 1765
MhlI GDGCHC 2 cut(s) 1139, 1664
MlyI GAGTC 1 cut(s) 1265
MmeI TCCRAC 1 cut(s) 243
MnlI CCTC 7 cut(s) 278, 589, 778, 1367, 1378, 1476, 1737
MroXI GAANNNNTTC 1 cut(s) 1452
MseI TTAA 2 cut(s) 417, 1476
MslI CAYNNNNRTG 1 cut(s) 149
MspA1I CMGCKG 1 cut(s) 42
MspI CCGG 1 cut(s) 823
MspR9I CCNGG 3 cut(s) 1064, 1208, 1647
MunI CAATTG 3 cut(s) 102, 1615, 1765
Mva1269I GAATGC 1 cut(s) 1053
MvaI CCWGG 3 cut(s) 1064, 1208, 1647
MwoI GCNNNNNNNGC 1 cut(s) 1364
NdeI CATATG 1 cut(s) 9
NdeII GATC 5 cut(s) 77, 1286, 1429, 1506, 1627
NlaIII CATG 7 cut(s) 65, 176, 1081, 1371, 1464, 1612, 1634
NlaIV GGNNCC 3 cut(s) 156, 407, 821
NmuCI GTSAC 1 cut(s) 893
NspI RCATGY 2 cut(s) 1371, 1612
PagI TCATGA 1 cut(s) 61
PcsI WCGNNNNNNNCGW 1 cut(s) 226
PctI GAATGC 1 cut(s) 1053
PdmI GAANNNNTTC 1 cut(s) 1452
PfeI GAWTC 6 cut(s) 553, 790, 1015, 1268, 1453, 1760
PflMI CCANNNNNTGG 1 cut(s) 1582
PfoI TCCNGGA 2 cut(s) 1062, 1206
PkrI GCNGC 5 cut(s) 256, 1087, 1157, 1357, 1642
PleI GAGTC 1 cut(s) 1264
PpsI GAGTC 1 cut(s) 1264
PshBI ATTAAT 1 cut(s) 417
PsiI TTATAA 1 cut(s) 1694
Psp6I CCWGG 3 cut(s) 1062, 1206, 1645
PspFI CCCAGC 2 cut(s) 38, 42
PspGI CCWGG 3 cut(s) 1062, 1206, 1645
PspN4I GGNNCC 3 cut(s) 156, 407, 821
PspPI GGNCC 2 cut(s) 154, 1724
PstI CTGCAG 1 cut(s) 1090
PvuII CAGCTG 1 cut(s) 42
RsaI GTAC 5 cut(s) 280, 407, 1168, 1605, 1707
RsaNI GTAC 5 cut(s) 279, 406, 1167, 1604, 1706
RseI CAYNNNNRTG 1 cut(s) 149
SaqAI TTAA 2 cut(s) 417, 1476
SatI GCNGC 5 cut(s) 255, 1086, 1156, 1356, 1641
Sau3AI GATC 5 cut(s) 77, 1286, 1429, 1506, 1627
Sau96I GGNCC 2 cut(s) 154, 1724
ScaI AGTACT 1 cut(s) 280
SchI GAGTC 1 cut(s) 1265
ScrFI CCNGG 3 cut(s) 1064, 1208, 1647
SduI GDGCHC 2 cut(s) 1139, 1664
SfaNI GCATC 4 cut(s) 38, 292, 635, 816
SfcI CTRYAG 1 cut(s) 1086
SinI GGWCC 1 cut(s) 1724
SmiMI CAYNNNNRTG 1 cut(s) 149
SmlI CTYRAG 2 cut(s) 1657, 1728
SmoI CTYRAG 2 cut(s) 1657, 1728
SsiI CCGC 4 cut(s) 382, 403, 557, 1010
SspI AATATT 1 cut(s) 313
SspMI CTAG 4 cut(s) 282, 338, 653, 1152
StyD4I CCNGG 3 cut(s) 1062, 1206, 1645
TaaI ACNGT 5 cut(s) 278, 535, 937, 1050, 1514
TaqI TCGA 5 cut(s) 194, 220, 386, 1372, 1509
TatI WGTACW 3 cut(s) 278, 1166, 1705
TfiI GAWTC 6 cut(s) 553, 790, 1015, 1268, 1453, 1760
Tru1I TTAA 2 cut(s) 417, 1476
Tru9I TTAA 2 cut(s) 417, 1476
TscAI CASTG 3 cut(s) 304, 871, 948
TseFI GTSAC 1 cut(s) 893
TseI GCWGC 5 cut(s) 254, 1085, 1155, 1355, 1640
Tsp45I GTSAC 1 cut(s) 893
TspGWI ACGGA 1 cut(s) 1502
TspRI CASTG 3 cut(s) 304, 871, 948
Van91I CCANNNNNTGG 1 cut(s) 1582
VpaK11BI GGWCC 1 cut(s) 1724
VspI ATTAAT 1 cut(s) 417
XapI RAATTY 4 cut(s) 422, 962, 1028, 1039
XbaI TCTAGA 1 cut(s) 337
XceI RCATGY 2 cut(s) 1371, 1612
XmnI GAANNNNTTC 1 cut(s) 1452
XspI CTAG 4 cut(s) 282, 338, 653, 1152
ZrmI AGTACT 1 cut(s) 280
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.