Rmu_co8013146.1_g000001
ERF Family

Transcription termination factor family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8013146.1
OG0001228
Physical Location & Seq
Reverse (-)
2 .. 452
451 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8013146.1_g000001.1.cds

Sequence Viewer

Length: 451 bp
atgagcaaaaactcaccgcattttctcaacaagcttttgaaatgcgttggtaatgagaaggaaatccggcagtcggtttcccggtacttgctttaccaccctgttaatgagtttgagcctttctttgagagtttgggtttgaaaccttcagagtatgttcattttcttccacctaattccatgttcttgatcgatgagagtctgttgcttcacaattatgctgttttgtgtcagtttggggttgtgcgtaataggatagggaagatatacaaggaagctgcagaagtttttcgatatgattttaaggttttgcaatcaaaacttcgagcctatgaagagctgggtctcagtcgatatgctttagttaagtttattgttgctgctccttatttgttagttggggatgtagatgtggcatttgttgaggtgttggagaaattgaggagccttg
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
mTERF

Protein Analysis

150

Amino Acids

17.41

Weight (kDa)

8.48

Isoelectric Point (pI)

43.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 17
AcuI CTGAAG 1 cut(s) 132
AfaI GTAC 1 cut(s) 86
AfiI CCNNNNNNNGG 1 cut(s) 73
AgsI TTSAA 2 cut(s) 40, 142
AluBI AGCT 3 cut(s) 34, 278, 340
AluI AGCT 3 cut(s) 34, 278, 340
Alw26I GTCTC 1 cut(s) 350
ApeKI GCWGC 2 cut(s) 278, 380
Asp700I GAANNNNTTC 1 cut(s) 288
AsuC2I CCSGG 1 cut(s) 82
AsuHPI GGTGA 1 cut(s) 6
BbvI GCAGC 2 cut(s) 265, 367
BcnI CCSGG 1 cut(s) 82
BcoDI GTCTC 1 cut(s) 350
BfmI CTRYAG 1 cut(s) 279
BisI GCNGC 2 cut(s) 279, 381
BlsI GCNGC 2 cut(s) 280, 382
Bme1390I CCNGG 1 cut(s) 82
BmiI GGNNCC 1 cut(s) 446
BmrFI CCNGG 1 cut(s) 82
BpuMI CCSGG 1 cut(s) 82
Bsa29I ATCGAT 1 cut(s) 192
BsaI GGTCTC 1 cut(s) 350
Bsc4I CCNNNNNNNGG 1 cut(s) 73
BseCI ATCGAT 1 cut(s) 192
BseGI GGATG 1 cut(s) 409
BseLI CCNNNNNNNGG 1 cut(s) 73
BseMII CTCAG 1 cut(s) 361
BseXI GCAGC 2 cut(s) 265, 367
BseYI CCCAGC 1 cut(s) 340
BshVI ATCGAT 1 cut(s) 192
BsiSI CCGG 2 cut(s) 67, 82
BslI CCNNNNNNNGG 1 cut(s) 73
BsmAI GTCTC 1 cut(s) 350
Bso31I GGTCTC 1 cut(s) 350
Bsp143I GATC 1 cut(s) 189
BspACI CCGC 1 cut(s) 17
BspCNI CTCAG 1 cut(s) 360
BspDI ATCGAT 1 cut(s) 192
BspLI GGNNCC 1 cut(s) 446
BspMAI CTGCAG 1 cut(s) 283
BspQI GCTCTTC 1 cut(s) 330
BspTNI GGTCTC 1 cut(s) 350
BssMI GATC 1 cut(s) 189
Bst6I CTCTTC 1 cut(s) 330
BstDEI CTNAG 1 cut(s) 347
BstF5I GGATG 1 cut(s) 409
BstKTI GATC 1 cut(s) 192
BstMAI GTCTC 1 cut(s) 350
BstMBI GATC 1 cut(s) 189
BstSCI CCNGG 1 cut(s) 80
BstSFI CTRYAG 1 cut(s) 279
BstV1I GCAGC 2 cut(s) 265, 367
Bsu15I ATCGAT 1 cut(s) 192
BsuTUI ATCGAT 1 cut(s) 192
BtsCI GGATG 1 cut(s) 409
ClaI ATCGAT 1 cut(s) 192
Csp6I GTAC 1 cut(s) 85
CviAII CATG 1 cut(s) 181
CviJI RGCY 6 cut(s) 34, 118, 278, 329, 340, 447
CviKI_1 RGCY 6 cut(s) 34, 118, 278, 329, 340, 447
CviQI GTAC 1 cut(s) 85
DdeI CTNAG 1 cut(s) 347
DpnI GATC 1 cut(s) 191
DpnII GATC 1 cut(s) 189
Eam1104I CTCTTC 1 cut(s) 330
EarI CTCTTC 1 cut(s) 330
Eco31I GGTCTC 1 cut(s) 350
Eco57I CTGAAG 1 cut(s) 132
FaeI CATG 1 cut(s) 184
FaiI YATR 7 cut(s) 156, 182, 219, 268, 297, 333, 357
FatI CATG 1 cut(s) 180
Fnu4HI GCNGC 2 cut(s) 279, 381
FokI GGATG 1 cut(s) 416
Fsp4HI GCNGC 2 cut(s) 279, 381
GluI GCNGC 2 cut(s) 279, 381
GsaI CCCAGC 1 cut(s) 344
HapII CCGG 2 cut(s) 67, 82
Hin1II CATG 1 cut(s) 184
HindIII AAGCTT 1 cut(s) 32
HinfI GANTC 1 cut(s) 199
HpaII CCGG 2 cut(s) 67, 82
HphI GGTGA 1 cut(s) 6
Hpy188I TCNGA 1 cut(s) 151
Hpy188III TCNNGA 1 cut(s) 187
HpyAV CCTTC 2 cut(s) 52, 156
HpyCH4V TGCA 2 cut(s) 281, 313
HpyF3I CTNAG 1 cut(s) 347
Hsp92II CATG 1 cut(s) 184
Kzo9I GATC 1 cut(s) 189
LguI GCTCTTC 1 cut(s) 330
LmnI GCTCC 2 cut(s) 388, 444
LpnPI CCDG 4 cut(s) 80, 95, 114, 326
Lsp1109I GCAGC 2 cut(s) 265, 367
MalI GATC 1 cut(s) 191
MboI GATC 1 cut(s) 189
MboII GAAGA 3 cut(s) 158, 274, 347
MluCI AATT 3 cut(s) 175, 214, 437
MlyI GAGTC 1 cut(s) 208
MmeI TCCRAC 1 cut(s) 411
MnlI CCTC 2 cut(s) 418, 435
MroXI GAANNNNTTC 1 cut(s) 288
MseI TTAA 3 cut(s) 105, 303, 366
MslI CAYNNNNRTG 1 cut(s) 216
MspI CCGG 2 cut(s) 67, 82
MspR9I CCNGG 1 cut(s) 82
NciI CCSGG 1 cut(s) 82
NdeII GATC 1 cut(s) 189
NlaIII CATG 1 cut(s) 184
NlaIV GGNNCC 1 cut(s) 446
PciSI GCTCTTC 1 cut(s) 330
PdmI GAANNNNTTC 1 cut(s) 288
PkrI GCNGC 2 cut(s) 280, 382
PleI GAGTC 1 cut(s) 207
PpsI GAGTC 1 cut(s) 207
PspFI CCCAGC 1 cut(s) 340
PspN4I GGNNCC 1 cut(s) 446
PstI CTGCAG 1 cut(s) 283
RsaI GTAC 1 cut(s) 86
RsaNI GTAC 1 cut(s) 85
RseI CAYNNNNRTG 1 cut(s) 216
SapI GCTCTTC 1 cut(s) 330
SaqAI TTAA 3 cut(s) 105, 303, 366
SatI GCNGC 2 cut(s) 279, 381
Sau3AI GATC 1 cut(s) 189
SchI GAGTC 1 cut(s) 208
ScrFI CCNGG 1 cut(s) 82
SetI ASST 7 cut(s) 36, 148, 175, 280, 309, 342, 429
SfcI CTRYAG 1 cut(s) 279
SmiMI CAYNNNNRTG 1 cut(s) 216
Sse9I AATT 3 cut(s) 175, 214, 437
SsiI CCGC 1 cut(s) 17
StyD4I CCNGG 1 cut(s) 80
TaqI TCGA 4 cut(s) 192, 292, 325, 352
TasI AATT 3 cut(s) 175, 214, 437
Tru1I TTAA 3 cut(s) 105, 303, 366
Tru9I TTAA 3 cut(s) 105, 303, 366
TseI GCWGC 2 cut(s) 278, 380
TspDTI ATGAA 2 cut(s) 149, 348
XmnI GAANNNNTTC 1 cut(s) 288
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.