Rmu_sc0020879.1_g000003
ERF Family

mTERF

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0020879.1
OG0001228
Physical Location & Seq
Forward (+)
8349 .. 9629
1281 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0020879.1_g000003.1.cds

Sequence Viewer

Length: 1281 bp
atgtatttgactgatgatgagttgttgcttcataattatactgttttatctaattatgggattccgccgaataagataggaaagatttacagggaagcaacagaggtctttcaatatgattttcaggttttggcatcaaaacttcaagcttatgaagaactaggtcttagccgttctgctttagttcgctatgttgttggtagtccttatcttttggttggggatgtcaatgcagtatttgtttcagtattggaaaaattgaagagtattggatttgaaaccaataggattgaggggaatttatgggaagataacacttattattggagccggatgcttgaagttttgagtttgtttagtgagatgggttgcagtgatgagcagttgggcaagctacttcgtcacaacccagatattttatttgaaagttcaggggaaatgacagtttcactgattgggttgttacaaaaatttggatttacgaagagagagttatgttcaatgtttctacaatttccgcagattccagtagcaaaatttgttgcaaatttgagacggtgcattctgttcctggatgagattgacatgaaggctgcagagattgggaagattgttcattctcaccccctgctactgggttcgtgctctttgaaaaaaactagcagcttactttgtactttgaatgttgggaagaaacgattgtctcaatacatccaggagaacccacaagagctaaagaattgggtttggggtagaaaaattgagtcatttccagattcaggagatgaagttagatcaagggctgaaaggactaagttcttgttagacataggatttgtagaaaactccagcaaaatgaaagcagcgctgaaggcatgtcgaggcaatggagaggagcttcaggaaagatttgattgcatagtaaaagctggtttggatcggaaggatgtctgtgaactgattcaatcatgccctcaaaatcttaaccagacaacggatgtgattgaaatgaagatcgactgtcttgtaaatgaattgggttatcccatatcgtccttgttgactgccacaagatatctttcccataaaatggaaagggtcaagcttagggtacgcatgttcaattggctcaaagatcatggaatagctgctcctgggctttccttgagcactcttatttcttgctcagatagttattttataaagacttatgtacatcgtcatcctgctggtcctcaagtttggcacgatttgaagaatgaaattgaatccaattgctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
mTERF

Protein Analysis

426

Amino Acids

48.57

Weight (kDa)

6.76

Isoelectric Point (pI)

43.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1202
AccB7I CCANNNNNTGG 1 cut(s) 1090
AciI CCGC 2 cut(s) 65, 518
AclWI GGATC 1 cut(s) 945
AcsI RAATTY 4 cut(s) 298, 470, 536, 547
AcuI CTGAAG 2 cut(s) 884, 890
AfaI GTAC 3 cut(s) 676, 1113, 1215
AfeI AGCGCT 1 cut(s) 867
AfiI CCNNNNNNNGG 4 cut(s) 634, 779, 994, 1090
AjnI CCWGG 3 cut(s) 570, 714, 1153
AluBI AGCT 8 cut(s) 149, 394, 666, 733, 898, 929, 1105, 1148
AluI AGCT 8 cut(s) 149, 394, 666, 733, 898, 929, 1105, 1148
Alw21I GWGCWC 2 cut(s) 647, 1172
Alw26I GTCTC 2 cut(s) 547, 708
AlwI GGATC 1 cut(s) 945
Aor51HI AGCGCT 1 cut(s) 867
ApeKI GCWGC 4 cut(s) 593, 663, 863, 1148
ApoI RAATTY 4 cut(s) 298, 470, 536, 547
ArsI GACNNNNNNTTYG 2 cut(s) 818, 850
Asp700I GAANNNNTTC 1 cut(s) 960
AspLEI GCGC 1 cut(s) 868
AspS9I GGNCC 1 cut(s) 1232
AsuHPI GGTGA 1 cut(s) 614
AvaII GGWCC 1 cut(s) 1232
BaeI ACNNNNGTAYC 2 cut(s) 1103, 1136
Bbv12I GWGCWC 2 cut(s) 647, 1172
BbvI GCAGC 4 cut(s) 580, 675, 875, 1135
BccI CCATC 1 cut(s) 358
BceAI ACGGC 1 cut(s) 156
BciT130I CCWGG 3 cut(s) 572, 716, 1155
BcoDI GTCTC 2 cut(s) 547, 708
BfaI CTAG 2 cut(s) 161, 660
BfmI CTRYAG 1 cut(s) 594
BfoI RGCGCY 1 cut(s) 869
BisI GCNGC 4 cut(s) 594, 664, 864, 1149
BlsI GCNGC 4 cut(s) 595, 665, 865, 1150
Bme1390I CCNGG 3 cut(s) 572, 716, 1155
Bme18I GGWCC 1 cut(s) 1232
BmgT120I GGNCC 1 cut(s) 1232
BmiI GGNNCC 1 cut(s) 329
BmrFI CCNGG 3 cut(s) 572, 716, 1155
BmrI ACTGGG 1 cut(s) 644
BmsI GCATC 2 cut(s) 143, 324
BmuI ACTGGG 1 cut(s) 644
BpmI CTGGAG 1 cut(s) 832
Bpu10I CCTNAGC 1 cut(s) 1106
BpuEI CTTGAG 2 cut(s) 1186, 1221
BsaJI CCNNGG 1 cut(s) 1154
BsaXI ACNNNNNCTCC 2 cut(s) 774, 804
Bsc4I CCNNNNNNNGG 4 cut(s) 634, 779, 994, 1090
Bse1I ACTGG 2 cut(s) 527, 639
Bse3DI GCAATG 1 cut(s) 892
BseBI CCWGG 3 cut(s) 572, 716, 1155
BseDI CCNNGG 1 cut(s) 1154
BseGI GGATG 7 cut(s) 229, 339, 580, 711, 952, 1003, 1222
BseLI CCNNNNNNNGG 4 cut(s) 634, 779, 994, 1090
BseMI GCAATG 1 cut(s) 892
BseMII CTCAG 1 cut(s) 1200
BseNI ACTGG 2 cut(s) 527, 639
BseRI GAGGAG 1 cut(s) 908
BseXI GCAGC 4 cut(s) 580, 675, 875, 1135
BsiHKAI GWGCWC 2 cut(s) 647, 1172
BsiSI CCGG 1 cut(s) 331
BslI CCNNNNNNNGG 4 cut(s) 634, 779, 994, 1090
BsmAI GTCTC 2 cut(s) 547, 708
BsmBI CGTCTC 1 cut(s) 547
BsmI GAATGC 1 cut(s) 561
Bsp1286I GDGCHC 2 cut(s) 647, 1172
Bsp1407I TGTACA 1 cut(s) 1213
Bsp143I GATC 4 cut(s) 794, 937, 1014, 1135
BspACI CCGC 2 cut(s) 65, 518
BspCNI CTCAG 1 cut(s) 1199
BspLI GGNNCC 1 cut(s) 329
BspMAI CTGCAG 1 cut(s) 598
BspPI GGATC 1 cut(s) 945
BsrDI GCAATG 1 cut(s) 892
BsrGI TGTACA 1 cut(s) 1213
BsrI ACTGG 2 cut(s) 527, 639
BssECI CCNNGG 1 cut(s) 1154
BssMI GATC 4 cut(s) 794, 937, 1014, 1135
Bst2UI CCWGG 3 cut(s) 572, 716, 1155
Bst4CI ACNGT 4 cut(s) 43, 445, 558, 1022
Bst6I CTCTTC 2 cut(s) 257, 479
BstAUI TGTACA 1 cut(s) 1213
BstC8I GCNNGC 1 cut(s) 392
BstDEI CTNAG 4 cut(s) 167, 813, 1106, 1186
BstF5I GGATG 7 cut(s) 229, 339, 580, 711, 952, 1003, 1222
BstH2I RGCGCY 1 cut(s) 869
BstHHI GCGC 1 cut(s) 868
BstKTI GATC 4 cut(s) 797, 940, 1017, 1138
BstMAI GTCTC 2 cut(s) 547, 708
BstMBI GATC 4 cut(s) 794, 937, 1014, 1135
BstMWI GCNNNNNNNGC 1 cut(s) 872
BstNI CCWGG 3 cut(s) 572, 716, 1155
BstNSI RCATGY 2 cut(s) 879, 1120
BstSCI CCNGG 3 cut(s) 570, 714, 1153
BstSFI CTRYAG 1 cut(s) 594
BstV1I GCAGC 4 cut(s) 580, 675, 875, 1135
BtsCI GGATG 7 cut(s) 229, 339, 580, 711, 952, 1003, 1222
BtsI GCAGTG 1 cut(s) 379
BtsIMutI CAGTG 2 cut(s) 379, 449
Cac8I GCNNGC 1 cut(s) 392
CfoI GCGC 1 cut(s) 868
Cfr13I GGNCC 1 cut(s) 1232
Csp6I GTAC 3 cut(s) 675, 1112, 1214
CviAII CATG 5 cut(s) 586, 876, 969, 1117, 1139
CviQI GTAC 3 cut(s) 675, 1112, 1214
DdeI CTNAG 4 cut(s) 167, 813, 1106, 1186
DpnI GATC 4 cut(s) 796, 939, 1016, 1137
DpnII GATC 4 cut(s) 794, 937, 1014, 1135
Eam1104I CTCTTC 2 cut(s) 257, 479
EarI CTCTTC 2 cut(s) 257, 479
EciI GGCGGA 1 cut(s) 54
Eco32I GATATC 1 cut(s) 1076
Eco47I GGWCC 1 cut(s) 1232
Eco47III AGCGCT 1 cut(s) 867
Eco57I CTGAAG 2 cut(s) 884, 890
EcoRII CCWGG 3 cut(s) 570, 714, 1153
EcoRV GATATC 1 cut(s) 1076
Esp3I CGTCTC 1 cut(s) 547
FaeI CATG 5 cut(s) 589, 879, 972, 1120, 1142
FatI CATG 5 cut(s) 585, 875, 968, 1116, 1138
Fnu4HI GCNGC 4 cut(s) 594, 664, 864, 1149
FokI GGATG 7 cut(s) 236, 346, 587, 698, 959, 1010, 1209
Fsp4HI GCNGC 4 cut(s) 594, 664, 864, 1149
FspBI CTAG 2 cut(s) 161, 660
GlaI GCGC 1 cut(s) 867
GluI GCNGC 4 cut(s) 594, 664, 864, 1149
GsuI CTGGAG 1 cut(s) 832
HaeII RGCGCY 1 cut(s) 869
HapII CCGG 1 cut(s) 331
HhaI GCGC 1 cut(s) 868
Hin1II CATG 5 cut(s) 589, 879, 972, 1120, 1142
Hin6I GCGC 1 cut(s) 866
HinP1I GCGC 1 cut(s) 866
HincII GTYRAC 1 cut(s) 1062
HindII GTYRAC 1 cut(s) 1062
HindIII AAGCTT 2 cut(s) 147, 1103
HinfI GANTC 6 cut(s) 61, 523, 764, 776, 961, 1268
HpaII CCGG 1 cut(s) 331
HphI GGTGA 1 cut(s) 614
Hpy166II GTNNAC 2 cut(s) 956, 1062
Hpy188I TCNGA 2 cut(s) 942, 1189
Hpy188III TCNNGA 3 cut(s) 773, 780, 902
Hpy8I GTNNAC 2 cut(s) 956, 1062
HpyAV CCTTC 3 cut(s) 583, 865, 937
HpyCH4III ACNGT 4 cut(s) 43, 445, 558, 1022
HpyCH4V TGCA 6 cut(s) 233, 372, 545, 561, 596, 918
HpyF10VI GCNNNNNNNGC 1 cut(s) 872
HpyF3I CTNAG 4 cut(s) 167, 813, 1106, 1186
Hsp92II CATG 5 cut(s) 589, 879, 972, 1120, 1142
HspAI GCGC 1 cut(s) 866
Kzo9I GATC 4 cut(s) 794, 937, 1014, 1135
LmnI GCTCC 3 cut(s) 327, 895, 1156
Lsp1109I GCAGC 4 cut(s) 580, 675, 875, 1135
LweI GCATC 2 cut(s) 143, 324
MaeI CTAG 2 cut(s) 161, 660
MaeIII GTNAC 2 cut(s) 401, 462
MalI GATC 4 cut(s) 796, 939, 1016, 1137
MboI GATC 4 cut(s) 794, 937, 1014, 1135
MboII GAAGA 8 cut(s) 167, 274, 320, 496, 619, 703, 1024, 1267
MfeI CAATTG 2 cut(s) 1123, 1273
MhlI GDGCHC 2 cut(s) 647, 1172
MlyI GAGTC 1 cut(s) 773
MnlI CCTC 6 cut(s) 97, 286, 875, 886, 984, 1245
MroXI GAANNNNTTC 1 cut(s) 960
MseI TTAA 1 cut(s) 984
MspI CCGG 1 cut(s) 331
MspR9I CCNGG 3 cut(s) 572, 716, 1155
MunI CAATTG 2 cut(s) 1123, 1273
Mva1269I GAATGC 1 cut(s) 561
MvaI CCWGG 3 cut(s) 572, 716, 1155
MwoI GCNNNNNNNGC 1 cut(s) 872
NdeII GATC 4 cut(s) 794, 937, 1014, 1135
NlaIII CATG 5 cut(s) 589, 879, 972, 1120, 1142
NlaIV GGNNCC 1 cut(s) 329
NmuCI GTSAC 1 cut(s) 401
NspI RCATGY 2 cut(s) 879, 1120
PctI GAATGC 1 cut(s) 561
PdmI GAANNNNTTC 1 cut(s) 960
PfeI GAWTC 5 cut(s) 61, 523, 776, 961, 1268
PflMI CCANNNNNTGG 1 cut(s) 1090
PfoI TCCNGGA 2 cut(s) 570, 714
PkrI GCNGC 4 cut(s) 595, 665, 865, 1150
PleI GAGTC 1 cut(s) 772
PpsI GAGTC 1 cut(s) 772
PsiI TTATAA 1 cut(s) 1202
Psp6I CCWGG 3 cut(s) 570, 714, 1153
PspGI CCWGG 3 cut(s) 570, 714, 1153
PspN4I GGNNCC 1 cut(s) 329
PspPI GGNCC 1 cut(s) 1232
PstI CTGCAG 1 cut(s) 598
RsaI GTAC 3 cut(s) 676, 1113, 1215
RsaNI GTAC 3 cut(s) 675, 1112, 1214
SaqAI TTAA 1 cut(s) 984
SatI GCNGC 4 cut(s) 594, 664, 864, 1149
Sau3AI GATC 4 cut(s) 794, 937, 1014, 1135
Sau96I GGNCC 1 cut(s) 1232
SchI GAGTC 1 cut(s) 773
ScrFI CCNGG 3 cut(s) 572, 716, 1155
SduI GDGCHC 2 cut(s) 647, 1172
SfaNI GCATC 2 cut(s) 143, 324
SfcI CTRYAG 1 cut(s) 594
SinI GGWCC 1 cut(s) 1232
SmlI CTYRAG 2 cut(s) 1165, 1236
SmoI CTYRAG 2 cut(s) 1165, 1236
SsiI CCGC 2 cut(s) 65, 518
SspMI CTAG 2 cut(s) 161, 660
StyD4I CCNGG 3 cut(s) 570, 714, 1153
TaaI ACNGT 4 cut(s) 43, 445, 558, 1022
TaqI TCGA 2 cut(s) 880, 1017
TatI WGTACW 2 cut(s) 674, 1213
TfiI GAWTC 5 cut(s) 61, 523, 776, 961, 1268
Tru1I TTAA 1 cut(s) 984
Tru9I TTAA 1 cut(s) 984
TscAI CASTG 2 cut(s) 379, 456
TseFI GTSAC 1 cut(s) 401
TseI GCWGC 4 cut(s) 593, 663, 863, 1148
Tsp45I GTSAC 1 cut(s) 401
TspDTI ATGAA 9 cut(s) 20, 168, 602, 605, 801, 872, 1025, 1047, 1275
TspGWI ACGGA 1 cut(s) 1010
TspRI CASTG 2 cut(s) 379, 456
Van91I CCANNNNNTGG 1 cut(s) 1090
VpaK11BI GGWCC 1 cut(s) 1232
XapI RAATTY 4 cut(s) 298, 470, 536, 547
XceI RCATGY 2 cut(s) 879, 1120
XmnI GAANNNNTTC 1 cut(s) 960
XspI CTAG 2 cut(s) 161, 660
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.