Rroxscaffold_6G00401750
ERF Family

mTERF

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0001228
Physical Location & Seq
Reverse (-)
24138256 .. 24139854
1599 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00401750.1

Sequence Viewer

Length: 1599 bp
ATGGCCCCTGAAATTGAAAACCATGAAGTTTTGGTTGAAACTTCGACTGCTAAGGGCAGAAGAGCTACTCGTACTCTTCGTTACATTCAAAAAGAAACGCAGGCTGCATTGTTGGAGTATTTGCACAGTACTAGAGGCTTACATTTCACTGATGCTGAGAATATTAGTAAAAACTGCCCACATTTTCTAGACAAGCTTTTTCAAAGGGCTGATTGTGAGAGAGAGATTAGGCGGTCGATTGCTCGGTTCTTGCGGTACCACCCTATTAATGAATTTGAACCCTTCTTTGAGAGCTTGGGTTTGAAACCTTTCGAGTATGTTTCTCTTCTTCCACGCAATTTGATGTATTTGACTGATGATGAGTTGTTGCTTCATAATTATACTGTTTTATCTAATTATGGGATTCCGCCGAATAAGATAGGAAAGATTTACAGGGAAGCAACAGAGGTCTTTCAATATGATTTTCAGGTTTTGGAATCAAAACTTCAAGCTTATGAAGAACTAGGTCTTAGCCGTTCTGCTTTAGTTCGCTATGTTGTTGGTAGTCCTTATCTTTTGGTTGGGGATGTCAATGCACCATTTGTTTCGGTATTGGAAAAGTTGAAGAGTATTGGATTTGAAACCAATAGGATTGAGGGGAATTTATGGGAAGATAACACTTATTATTGGAGCCGGATGCTTGAAGTTTTGAGTTTGTTTAGTGAGATGGGTTGCAATGATGTGCAGTTGGGCAAGCTACTTCGTCACAACCCAGATATTTTATTTGAAAGTTCGGGGGAAATGACAGTTTCACTGATTGGGTTGTTACAAAAATTTGGATTTACAAAGAGAGAGTTATGTTCAATGTTTCTACAATTTCCGCAGATTCCTGTAGCAAAATTTGTGGCAAATTTGAGACGGTGCATTTTGTTCCTGGATGAGATTGACATGAAGGCTGCAGAGATTGGGAAGATTGTTCATTCTCACCCCCTGCTACTGGGTTCGTGCTCTTTGAAAAAAACTAGCAGCTTACTTTGTACTTTGAATGTTGGGAAGAAACGATTGTCTCAATACATCCAGGAGAACCCACAAGAATTAAAGAATTGGGTTTGGGGTAGAAAAATTGAGTCATTTCCAGATTCAGGAGATGAAGTTAGATCAAAGGCTGAAAGGACTAAGTTCTTGTTAGACATAGGATTTGTAGAAAACTCCAGCAAAATGAAAGCAGCACTGAAGGCATGTCGAGGCAATGGAGAGGAGCTTCAGGAAAGATTTGATTGTATAGTAAAAGCTGGTTTGGATCGGAAGGATGTCTGTGAACTGATTCAATCATGCCCTCAAAATCTTAACCAGACAACAGATGTGATTGAAATGAAGATCGACTGTCTTGTAAATGAATTGGGTTATCCCATATCGTCCTTGTTGACTGCCACAAGATATCTTTCCCATAAAATGGAAAGGGTCAAGCTTAGGGTACGCATGTTCAATTGGCTCAAAGATCACGGAATAGCTGCTCCTGGGCTTTCCTTGAGCACTCTTATTTCTTGCTCAGATAGTTATTTTATAAAGACTTATATGTACATCGTCATCCTGCTGGTCCTCAAGTTTGGCACGATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
mTERF

Protein Analysis

532

Amino Acids

61.11

Weight (kDa)

7.86

Isoelectric Point (pI)

42.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
mTERF PF02536 230 - 395 6.5e-13 mTERF
mTERF PF02536 412 - 514 3.5e-12 mTERF
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1544
Acc65I GGTACC 1 cut(s) 255
AccB1I GGYRCC 1 cut(s) 255
AccB7I CCANNNNNTGG 1 cut(s) 1432
AciI CCGC 4 cut(s) 232, 253, 407, 860
AclWI GGATC 1 cut(s) 1287
AcsI RAATTY 5 cut(s) 272, 640, 812, 878, 889
AcuI CTGAAG 2 cut(s) 1226, 1232
AfaI GTAC 6 cut(s) 73, 130, 257, 1018, 1455, 1559
AfiI CCNNNNNNNGG 3 cut(s) 976, 1121, 1432
AjnI CCWGG 3 cut(s) 912, 1056, 1495
Alw21I GWGCWC 2 cut(s) 989, 1514
Alw26I GTCTC 2 cut(s) 889, 1050
AlwI GGATC 1 cut(s) 1287
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 5 cut(s) 104, 935, 1005, 1205, 1490
ApoI RAATTY 5 cut(s) 272, 640, 812, 878, 889
ArsI GACNNNNNNTTYG 2 cut(s) 1160, 1192
AseI ATTAAT 1 cut(s) 267
Asp700I GAANNNNTTC 2 cut(s) 308, 1302
Asp718I GGTACC 1 cut(s) 255
AspS9I GGNCC 2 cut(s) 4, 1576
AsuHPI GGTGA 1 cut(s) 956
AvaII GGWCC 1 cut(s) 1576
BaeI ACNNNNGTAYC 2 cut(s) 1445, 1478
BanI GGYRCC 1 cut(s) 255
Bbv12I GWGCWC 2 cut(s) 989, 1514
BbvI GCAGC 5 cut(s) 91, 922, 1017, 1217, 1477
BccI CCATC 1 cut(s) 700
BceAI ACGGC 1 cut(s) 498
BciT130I CCWGG 3 cut(s) 914, 1058, 1497
BcoDI GTCTC 2 cut(s) 889, 1050
BfaI CTAG 4 cut(s) 132, 188, 503, 1002
BfmI CTRYAG 2 cut(s) 870, 936
BisI GCNGC 5 cut(s) 105, 936, 1006, 1206, 1491
BlsI GCNGC 5 cut(s) 106, 937, 1007, 1207, 1492
BmcAI AGTACT 1 cut(s) 130
Bme1390I CCNGG 3 cut(s) 914, 1058, 1497
Bme18I GGWCC 1 cut(s) 1576
BmgT120I GGNCC 2 cut(s) 4, 1576
BmiI GGNNCC 3 cut(s) 6, 257, 671
BmrFI CCNGG 3 cut(s) 914, 1058, 1497
BmrI ACTGGG 1 cut(s) 986
BmsI GCATC 2 cut(s) 142, 666
BmuI ACTGGG 1 cut(s) 986
BpmI CTGGAG 1 cut(s) 1174
Bpu10I CCTNAGC 2 cut(s) 51, 1448
BpuEI CTTGAG 2 cut(s) 1528, 1565
BsaJI CCNNGG 1 cut(s) 1496
BsaXI ACNNNNNCTCC 2 cut(s) 1116, 1146
Bsc4I CCNNNNNNNGG 3 cut(s) 976, 1121, 1432
Bse1I ACTGG 1 cut(s) 981
Bse3DI GCAATG 2 cut(s) 721, 1234
BseBI CCWGG 3 cut(s) 914, 1058, 1497
BseDI CCNNGG 1 cut(s) 1496
BseGI GGATG 6 cut(s) 571, 681, 922, 1053, 1294, 1566
BseLI CCNNNNNNNGG 3 cut(s) 976, 1121, 1432
BseMI GCAATG 2 cut(s) 721, 1234
BseMII CTCAG 2 cut(s) 147, 1542
BseNI ACTGG 1 cut(s) 981
BseRI GAGGAG 1 cut(s) 1250
BseXI GCAGC 5 cut(s) 91, 922, 1017, 1217, 1477
BsgI GTGCAG 1 cut(s) 743
Bsh1285I CGRYCG 1 cut(s) 236
BshFI GGCC 1 cut(s) 5
BshNI GGYRCC 1 cut(s) 255
BsiEI CGRYCG 1 cut(s) 236
BsiHKAI GWGCWC 2 cut(s) 989, 1514
BsiSI CCGG 1 cut(s) 673
BslI CCNNNNNNNGG 3 cut(s) 976, 1121, 1432
BsmAI GTCTC 2 cut(s) 889, 1050
BsmBI CGTCTC 1 cut(s) 889
BsnI GGCC 1 cut(s) 5
Bsp1286I GDGCHC 2 cut(s) 989, 1514
Bsp1407I TGTACA 1 cut(s) 1557
Bsp143I GATC 4 cut(s) 1136, 1279, 1356, 1477
BspACI CCGC 4 cut(s) 232, 253, 407, 860
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 2 cut(s) 148, 1541
BspLI GGNNCC 3 cut(s) 6, 257, 671
BspMAI CTGCAG 1 cut(s) 940
BspPI GGATC 1 cut(s) 1287
BspQI GCTCTTC 1 cut(s) 55
BspT107I GGYRCC 1 cut(s) 255
BsrDI GCAATG 2 cut(s) 721, 1234
BsrGI TGTACA 1 cut(s) 1557
BsrI ACTGG 1 cut(s) 981
BssECI CCNNGG 1 cut(s) 1496
BssMI GATC 4 cut(s) 1136, 1279, 1356, 1477
Bst2UI CCWGG 3 cut(s) 914, 1058, 1497
Bst4CI ACNGT 5 cut(s) 128, 385, 787, 900, 1364
Bst6I CTCTTC 4 cut(s) 55, 81, 330, 599
BstAUI TGTACA 1 cut(s) 1557
BstC8I GCNNGC 2 cut(s) 102, 734
BstDEI CTNAG 6 cut(s) 51, 156, 509, 1155, 1448, 1528
BstF5I GGATG 6 cut(s) 571, 681, 922, 1053, 1294, 1566
BstKTI GATC 4 cut(s) 1139, 1282, 1359, 1480
BstMAI GTCTC 2 cut(s) 889, 1050
BstMBI GATC 4 cut(s) 1136, 1279, 1356, 1477
BstMCI CGRYCG 1 cut(s) 236
BstMWI GCNNNNNNNGC 1 cut(s) 1214
BstNI CCWGG 3 cut(s) 914, 1058, 1497
BstNSI RCATGY 2 cut(s) 1221, 1462
BstSCI CCNGG 3 cut(s) 912, 1056, 1495
BstSFI CTRYAG 2 cut(s) 870, 936
BstV1I GCAGC 5 cut(s) 91, 922, 1017, 1217, 1477
BsuRI GGCC 1 cut(s) 5
BtsCI GGATG 6 cut(s) 571, 681, 922, 1053, 1294, 1566
BtsIMutI CAGTG 3 cut(s) 147, 791, 1208
Cac8I GCNNGC 2 cut(s) 102, 734
Cfr13I GGNCC 2 cut(s) 4, 1576
Csp6I GTAC 6 cut(s) 72, 129, 256, 1017, 1454, 1558
CspCI CAANNNNNGTGG 4 cut(s) 321, 356, 864, 899
CviAII CATG 5 cut(s) 23, 928, 1218, 1311, 1459
CviQI GTAC 6 cut(s) 72, 129, 256, 1017, 1454, 1558
DdeI CTNAG 6 cut(s) 51, 156, 509, 1155, 1448, 1528
DpnI GATC 4 cut(s) 1138, 1281, 1358, 1479
DpnII GATC 4 cut(s) 1136, 1279, 1356, 1477
Eam1104I CTCTTC 4 cut(s) 55, 81, 330, 599
EarI CTCTTC 4 cut(s) 55, 81, 330, 599
EciI GGCGGA 1 cut(s) 396
Eco32I GATATC 1 cut(s) 1418
Eco47I GGWCC 1 cut(s) 1576
Eco57I CTGAAG 2 cut(s) 1226, 1232
EcoRII CCWGG 3 cut(s) 912, 1056, 1495
EcoRV GATATC 1 cut(s) 1418
Esp3I CGTCTC 1 cut(s) 889
FaeI CATG 5 cut(s) 26, 931, 1221, 1314, 1462
FatI CATG 5 cut(s) 22, 927, 1217, 1310, 1458
Fnu4HI GCNGC 5 cut(s) 105, 936, 1006, 1206, 1491
FokI GGATG 6 cut(s) 578, 688, 929, 1040, 1301, 1553
Fsp4HI GCNGC 5 cut(s) 105, 936, 1006, 1206, 1491
FspBI CTAG 4 cut(s) 132, 188, 503, 1002
GluI GCNGC 5 cut(s) 105, 936, 1006, 1206, 1491
GsuI CTGGAG 1 cut(s) 1174
HaeIII GGCC 1 cut(s) 5
HapII CCGG 1 cut(s) 673
Hin1II CATG 5 cut(s) 26, 931, 1221, 1314, 1462
HincII GTYRAC 1 cut(s) 1404
HindII GTYRAC 1 cut(s) 1404
HindIII AAGCTT 3 cut(s) 194, 489, 1445
HinfI GANTC 6 cut(s) 403, 476, 865, 1106, 1118, 1303
HpaII CCGG 1 cut(s) 673
HphI GGTGA 1 cut(s) 956
Hpy166II GTNNAC 2 cut(s) 1298, 1404
Hpy188I TCNGA 2 cut(s) 1284, 1531
Hpy188III TCNNGA 4 cut(s) 188, 1115, 1122, 1244
Hpy8I GTNNAC 2 cut(s) 1298, 1404
HpyAV CCTTC 4 cut(s) 292, 925, 1207, 1279
HpyCH4III ACNGT 5 cut(s) 128, 385, 787, 900, 1364
HpyCH4V TGCA 7 cut(s) 107, 124, 575, 714, 724, 903, 938
HpyF10VI GCNNNNNNNGC 1 cut(s) 1214
HpyF3I CTNAG 6 cut(s) 51, 156, 509, 1155, 1448, 1528
Hsp92II CATG 5 cut(s) 26, 931, 1221, 1314, 1462
KpnI GGTACC 1 cut(s) 259
Kzo9I GATC 4 cut(s) 1136, 1279, 1356, 1477
LguI GCTCTTC 1 cut(s) 55
LmnI GCTCC 3 cut(s) 669, 1237, 1498
Lsp1109I GCAGC 5 cut(s) 91, 922, 1017, 1217, 1477
LweI GCATC 2 cut(s) 142, 666
MaeI CTAG 4 cut(s) 132, 188, 503, 1002
MaeIII GTNAC 3 cut(s) 80, 743, 804
MalI GATC 4 cut(s) 1138, 1281, 1358, 1479
MboI GATC 4 cut(s) 1136, 1279, 1356, 1477
MfeI CAATTG 1 cut(s) 1465
MhlI GDGCHC 2 cut(s) 989, 1514
MlyI GAGTC 1 cut(s) 1115
MmeI TCCRAC 1 cut(s) 93
MnlI CCTC 7 cut(s) 128, 439, 628, 1217, 1228, 1326, 1589
MroXI GAANNNNTTC 2 cut(s) 308, 1302
MseI TTAA 3 cut(s) 267, 1076, 1326
MspI CCGG 1 cut(s) 673
MspR9I CCNGG 3 cut(s) 914, 1058, 1497
MunI CAATTG 1 cut(s) 1465
MvaI CCWGG 3 cut(s) 914, 1058, 1497
MwoI GCNNNNNNNGC 1 cut(s) 1214
NdeII GATC 4 cut(s) 1136, 1279, 1356, 1477
NlaIII CATG 5 cut(s) 26, 931, 1221, 1314, 1462
NlaIV GGNNCC 3 cut(s) 6, 257, 671
NmuCI GTSAC 1 cut(s) 743
NspI RCATGY 2 cut(s) 1221, 1462
PciSI GCTCTTC 1 cut(s) 55
PcsI WCGNNNNNNNCGW 1 cut(s) 76
PdmI GAANNNNTTC 2 cut(s) 308, 1302
PfeI GAWTC 5 cut(s) 403, 476, 865, 1118, 1303
PflMI CCANNNNNTGG 1 cut(s) 1432
PfoI TCCNGGA 2 cut(s) 912, 1056
PkrI GCNGC 5 cut(s) 106, 937, 1007, 1207, 1492
PleI GAGTC 1 cut(s) 1114
PpsI GAGTC 1 cut(s) 1114
PshBI ATTAAT 1 cut(s) 267
PsiI TTATAA 1 cut(s) 1544
Psp6I CCWGG 3 cut(s) 912, 1056, 1495
PspGI CCWGG 3 cut(s) 912, 1056, 1495
PspN4I GGNNCC 3 cut(s) 6, 257, 671
PspPI GGNCC 2 cut(s) 4, 1576
PstI CTGCAG 1 cut(s) 940
RsaI GTAC 6 cut(s) 73, 130, 257, 1018, 1455, 1559
RsaNI GTAC 6 cut(s) 72, 129, 256, 1017, 1454, 1558
SapI GCTCTTC 1 cut(s) 55
SaqAI TTAA 3 cut(s) 267, 1076, 1326
SatI GCNGC 5 cut(s) 105, 936, 1006, 1206, 1491
Sau3AI GATC 4 cut(s) 1136, 1279, 1356, 1477
Sau96I GGNCC 2 cut(s) 4, 1576
ScaI AGTACT 1 cut(s) 130
SchI GAGTC 1 cut(s) 1115
ScrFI CCNGG 3 cut(s) 914, 1058, 1497
SduI GDGCHC 2 cut(s) 989, 1514
SfaNI GCATC 2 cut(s) 142, 666
SfcI CTRYAG 2 cut(s) 870, 936
SinI GGWCC 1 cut(s) 1576
SmlI CTYRAG 2 cut(s) 1507, 1580
SmoI CTYRAG 2 cut(s) 1507, 1580
SsiI CCGC 4 cut(s) 232, 253, 407, 860
SspI AATATT 1 cut(s) 163
SspMI CTAG 4 cut(s) 132, 188, 503, 1002
StyD4I CCNGG 3 cut(s) 912, 1056, 1495
TaaI ACNGT 5 cut(s) 128, 385, 787, 900, 1364
TaqI TCGA 5 cut(s) 44, 236, 312, 1222, 1359
TatI WGTACW 3 cut(s) 128, 1016, 1557
TfiI GAWTC 5 cut(s) 403, 476, 865, 1118, 1303
Tru1I TTAA 3 cut(s) 267, 1076, 1326
Tru9I TTAA 3 cut(s) 267, 1076, 1326
TscAI CASTG 3 cut(s) 154, 798, 1215
TseFI GTSAC 1 cut(s) 743
TseI GCWGC 5 cut(s) 104, 935, 1005, 1205, 1490
Tsp45I GTSAC 1 cut(s) 743
TspGWI ACGGA 1 cut(s) 1497
TspRI CASTG 3 cut(s) 154, 798, 1215
Van91I CCANNNNNTGG 1 cut(s) 1432
VpaK11BI GGWCC 1 cut(s) 1576
VspI ATTAAT 1 cut(s) 267
XapI RAATTY 5 cut(s) 272, 640, 812, 878, 889
XbaI TCTAGA 1 cut(s) 187
XceI RCATGY 2 cut(s) 1221, 1462
XmnI GAANNNNTTC 2 cut(s) 308, 1302
XspI CTAG 4 cut(s) 132, 188, 503, 1002
ZrmI AGTACT 1 cut(s) 130
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.