FvH4_6g22602
ERF Family

mTERF

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0001228
Physical Location & Seq
Forward (+)
16251976 .. 16254093
2118 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g22602.t1

Sequence Viewer

Length: 1773 bp
ATGACCCATTTGCCAAAACTCAGGATAGCATCTATTCCCAACTGGGTTTCTTCTATTTTTCATGAATATCACCTTACATCACCAAGAACCCTGTTTCACCCAATTGGGGTTTTCCCCAATGTCCAAATCCCTAGACTTTACAGCACAAAAATGGCCCCTGAAATTGAAAACCATGAAATTTTGGTTGAAACTTCGACTGCTAAGGGCAGAAAGGGTACTCATAGTCATCGTTACATTCAAAAAGAAATGCAAGCGGCATTGTTGGAGTATTTGCATAGCACTAGAGGCTTACAGTTCATTGATGCTGAGAATATTAGTAAAAACTGCCCACATTTTATAGACAAGCTTTTCAAAAGGGTTGATTGTGAGAGAGAGATTCGGAAGTCCATGGCTCGCTTCTTGCGTTACCACCCTATTAATGAATTTGAACCCTTCTTCGAGAGCTTGGGTTTGGAACCTTCCGAGTATGTTTCTCTTCTTCCCTGCAATTTGATGTATTTGATTGATGATGAGTTGTTGCTCCATAACTATACTGTTTTGTCTTATTATGGGATTCCACCGAATAAGGTTGGAAAGATTTACAGGGAAGCAAGAGAGGTCTTTCGATATGATTTTCAGGTTTTGGCATCAAAACTTCAAGCTTATGAAGAACTGGGTCTTAGTCGATCTGCTTTAGTTCACTATGTTGTTGGTAGTCCTGAACTTTTGCTTGGGGATGTCAATGCAGCATTTGTTTCGGTATTCAAAAAACTGAAGAGTATTGGATTTGAAAGTAATGGGATGGAGGGGAATTTAAAGGAAGATAACACTTATTATTGGAGCCGGATGCTTGAAGTTTTTAGTTTGTTTAGTGAGATGGGTTGCAGTGATGAGCAGTCGGGCAAGCTACTTCGCCACAACCCAGATATTTTATTTGAAAGTTCGGGGGAAACGACAGTCTCACTGATTGGGTTGTTACAGAAGTTTGGATTTACAAAGAGAGAGTTATGTTCAATGTTTTTACAATTTCCACAGATTCCGGTAGCAAAATTTGTTGCGAATTTAAGACAATGCATTTTGTTTCTGGATGAGATTGACATGAAGGCTGCAGAGATCGGGAAGATTGTGCATTCTCACACGCTGCTACTGGGTTTGTGCTCTTTGAAAAAAACTAAAAGCTTACTTGACACTTTGAATGTTGGGAAGAAACGATTGTCTCGGTACATCCAGGAGAACCCAGAAGAATTAAAAAACTGGGTTTGGGGTAGAAGAGTTGAATCATTTCCAAATTCGGGAGATGAAGTTAGATCAAAGGCTCAAAGGACTAAGTTCTTATTAGACATAGGATTTGTAGAAAACTCCAACAAAATGAAAGCAGCCCTGAAGGCATGTCGAGGCAACGGAGTGGAGCTTCAGGAAAGATTTGATTGTATTGTAAAAGCTGGTTTGGATCGGAAGGATGTCTGTGAAATGGTTCGATCAAGCCCTCAAATTCTGAACCAGACAACGGATGTGATTGAAATGAAGATCAACTGTCTTGTAAATGAATTGGGCTATCCCATATGGTCCTTGTTGACCGCCAAAAGATTACTTTCCTATAAAATGGAAAGGGTCAAGCTTAGGGTTCGCATGTTCAATTGGCTCAAAGATCATGGAATAGCTGATCCTGGTCTTTCGTTGAGCACTCTTATTTCTTGCTCAGAGAGTTATTTTATAAAGACTTATGTACATCGTCATCCTGCCGGTCCTCAAGTTTGGCATGATCTGAAGAATGAAATTGAATCCGATTGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
mTERF

Protein Analysis

591

Amino Acids

68.0

Weight (kDa)

8.53

Isoelectric Point (pI)

39.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
mTERF PF02536 281 - 444 5.7e-11 mTERF
mTERF PF02536 464 - 564 4.4e-11 mTERF
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1694
AciI CCGC 2 cut(s) 254, 1557
AclWI GGATC 2 cut(s) 1437, 1637
AcsI RAATTY 7 cut(s) 177, 422, 790, 1028, 1039, 1267, 1470
AcuI CTGAAG 4 cut(s) 773, 1376, 1382, 1766
AfaI GTAC 3 cut(s) 217, 1202, 1707
AfiI CCNNNNNNNGG 3 cut(s) 106, 1271, 1486
AjnI CCWGG 2 cut(s) 1206, 1645
AjuI GAANNNNNNNTTGG 2 cut(s) 693, 725
AluBI AGCT 9 cut(s) 346, 444, 641, 886, 1158, 1390, 1421, 1597, 1640
AluI AGCT 9 cut(s) 346, 444, 641, 886, 1158, 1390, 1421, 1597, 1640
Alw21I GWGCWC 2 cut(s) 1139, 1664
Alw26I GTCTC 2 cut(s) 943, 1200
AlwI GGATC 2 cut(s) 1437, 1637
AoxI GGCC 1 cut(s) 153
ApeKI GCWGC 4 cut(s) 725, 1085, 1120, 1355
ApoI RAATTY 7 cut(s) 177, 422, 790, 1028, 1039, 1267, 1470
ArsI GACNNNNNNTTYG 2 cut(s) 1310, 1342
AseI ATTAAT 1 cut(s) 417
Asp700I GAANNNNTTC 2 cut(s) 1260, 1452
AspS9I GGNCC 3 cut(s) 154, 1545, 1724
AsuHPI GGTGA 3 cut(s) 62, 72, 89
AvaII GGWCC 2 cut(s) 1545, 1724
Bbv12I GWGCWC 2 cut(s) 1139, 1664
BbvI GCAGC 4 cut(s) 737, 1072, 1107, 1367
BccI CCATC 2 cut(s) 775, 850
BcgI CGANNNNNNTGC 2 cut(s) 717, 751
BciT130I CCWGG 2 cut(s) 1208, 1647
BcoDI GTCTC 2 cut(s) 943, 1200
BfaI CTAG 2 cut(s) 132, 282
BfmI CTRYAG 1 cut(s) 1086
BglI GCCNNNNNGGC 1 cut(s) 1364
BisI GCNGC 5 cut(s) 255, 726, 1086, 1121, 1356
BlsI GCNGC 5 cut(s) 256, 727, 1087, 1122, 1357
Bme1390I CCNGG 2 cut(s) 1208, 1647
Bme18I GGWCC 2 cut(s) 1545, 1724
BmgT120I GGNCC 3 cut(s) 154, 1545, 1724
BmiI GGNNCC 3 cut(s) 156, 456, 821
BmrFI CCNGG 2 cut(s) 1208, 1647
BmrI ACTGGG 4 cut(s) 52, 662, 1136, 1243
BmsI GCATC 4 cut(s) 38, 292, 635, 816
BmuI ACTGGG 4 cut(s) 52, 662, 1136, 1243
Bpu10I CCTNAGC 2 cut(s) 201, 1598
BpuEI CTTGAG 1 cut(s) 1713
BsaJI CCNNGG 1 cut(s) 387
BsaWI WCCGGW 1 cut(s) 1018
BsaXI ACNNNNNCTCC 2 cut(s) 1266, 1296
Bsc4I CCNNNNNNNGG 3 cut(s) 106, 1271, 1486
Bse118I RCCGGY 1 cut(s) 1721
Bse1I ACTGG 4 cut(s) 47, 657, 1131, 1238
BseBI CCWGG 2 cut(s) 1208, 1647
BseDI CCNNGG 1 cut(s) 387
BseGI GGATG 8 cut(s) 721, 786, 831, 1072, 1203, 1444, 1495, 1714
BseLI CCNNNNNNNGG 3 cut(s) 106, 1271, 1486
BseMII CTCAG 3 cut(s) 34, 297, 1692
BseNI ACTGG 4 cut(s) 47, 657, 1131, 1238
BseXI GCAGC 4 cut(s) 737, 1072, 1107, 1367
BshFI GGCC 1 cut(s) 155
BsiHKAI GWGCWC 2 cut(s) 1139, 1664
BsiSI CCGG 3 cut(s) 823, 1019, 1722
BslI CCNNNNNNNGG 3 cut(s) 106, 1271, 1486
BsmAI GTCTC 2 cut(s) 943, 1200
BsmI GAATGC 1 cut(s) 1108
BsnI GGCC 1 cut(s) 155
Bsp1286I GDGCHC 2 cut(s) 1139, 1664
Bsp1407I TGTACA 1 cut(s) 1705
Bsp143I GATC 9 cut(s) 665, 1092, 1286, 1429, 1457, 1506, 1627, 1642, 1741
Bsp19I CCATGG 1 cut(s) 387
BspACI CCGC 2 cut(s) 254, 1557
BspANI GGCC 1 cut(s) 155
BspCNI CTCAG 3 cut(s) 33, 298, 1691
BspHI TCATGA 1 cut(s) 61
BspLI GGNNCC 3 cut(s) 156, 456, 821
BspMAI CTGCAG 1 cut(s) 1090
BspPI GGATC 2 cut(s) 1437, 1637
BsrFI RCCGGY 1 cut(s) 1721
BsrGI TGTACA 1 cut(s) 1705
BsrI ACTGG 4 cut(s) 47, 657, 1131, 1238
BssAI RCCGGY 1 cut(s) 1721
BssECI CCNNGG 1 cut(s) 387
BssMI GATC 9 cut(s) 665, 1092, 1286, 1429, 1457, 1506, 1627, 1642, 1741
BssT1I CCWWGG 1 cut(s) 387
Bst2UI CCWGG 2 cut(s) 1208, 1647
Bst4CI ACNGT 4 cut(s) 294, 535, 937, 1514
Bst6I CTCTTC 3 cut(s) 480, 749, 1243
BstAUI TGTACA 1 cut(s) 1705
BstC8I GCNNGC 3 cut(s) 252, 394, 884
BstDEI CTNAG 7 cut(s) 20, 201, 306, 659, 1305, 1598, 1678
BstDSI CCRYGG 1 cut(s) 387
BstF5I GGATG 8 cut(s) 721, 786, 831, 1072, 1203, 1444, 1495, 1714
BstKTI GATC 9 cut(s) 668, 1095, 1289, 1432, 1460, 1509, 1630, 1645, 1744
BstMAI GTCTC 2 cut(s) 943, 1200
BstMBI GATC 9 cut(s) 665, 1092, 1286, 1429, 1457, 1506, 1627, 1642, 1741
BstMWI GCNNNNNNNGC 2 cut(s) 285, 1364
BstNI CCWGG 2 cut(s) 1208, 1647
BstNSI RCATGY 2 cut(s) 1371, 1612
BstSCI CCNGG 2 cut(s) 1206, 1645
BstSFI CTRYAG 1 cut(s) 1086
BstV1I GCAGC 4 cut(s) 737, 1072, 1107, 1367
BsuRI GGCC 1 cut(s) 155
BtgI CCRYGG 1 cut(s) 387
BtsCI GGATG 8 cut(s) 721, 786, 831, 1072, 1203, 1444, 1495, 1714
BtsI GCAGTG 1 cut(s) 871
BtsIMutI CAGTG 2 cut(s) 871, 941
Cac8I GCNNGC 3 cut(s) 252, 394, 884
CciI TCATGA 1 cut(s) 61
Cfr10I RCCGGY 1 cut(s) 1721
Cfr13I GGNCC 3 cut(s) 154, 1545, 1724
Csp6I GTAC 3 cut(s) 216, 1201, 1706
CviAII CATG 8 cut(s) 62, 173, 388, 1078, 1368, 1609, 1631, 1739
CviQI GTAC 3 cut(s) 216, 1201, 1706
DdeI CTNAG 7 cut(s) 20, 201, 306, 659, 1305, 1598, 1678
DpnI GATC 9 cut(s) 667, 1094, 1288, 1431, 1459, 1508, 1629, 1644, 1743
DpnII GATC 9 cut(s) 665, 1092, 1286, 1429, 1457, 1506, 1627, 1642, 1741
DraI TTTAAA 1 cut(s) 795
Eam1104I CTCTTC 3 cut(s) 480, 749, 1243
EarI CTCTTC 3 cut(s) 480, 749, 1243
Eco130I CCWWGG 1 cut(s) 387
Eco47I GGWCC 2 cut(s) 1545, 1724
Eco57I CTGAAG 4 cut(s) 773, 1376, 1382, 1766
EcoRII CCWGG 2 cut(s) 1206, 1645
EcoT14I CCWWGG 1 cut(s) 387
EcoT22I ATGCAT 1 cut(s) 1055
ErhI CCWWGG 1 cut(s) 387
FaeI CATG 8 cut(s) 65, 176, 391, 1081, 1371, 1612, 1634, 1742
FatI CATG 8 cut(s) 61, 172, 387, 1077, 1367, 1608, 1630, 1738
FauNDI CATATG 1 cut(s) 1541
Fnu4HI GCNGC 5 cut(s) 255, 726, 1086, 1121, 1356
FokI GGATG 8 cut(s) 728, 793, 838, 1079, 1190, 1451, 1502, 1701
Fsp4HI GCNGC 5 cut(s) 255, 726, 1086, 1121, 1356
FspBI CTAG 2 cut(s) 132, 282
GluI GCNGC 5 cut(s) 255, 726, 1086, 1121, 1356
HaeIII GGCC 1 cut(s) 155
HapII CCGG 3 cut(s) 823, 1019, 1722
Hin1II CATG 8 cut(s) 65, 176, 391, 1081, 1371, 1612, 1634, 1742
HincII GTYRAC 1 cut(s) 1554
HindII GTYRAC 1 cut(s) 1554
HindIII AAGCTT 4 cut(s) 344, 639, 1156, 1595
HinfI GANTC 5 cut(s) 376, 553, 1015, 1256, 1760
HpaII CCGG 3 cut(s) 823, 1019, 1722
HphI GGTGA 3 cut(s) 62, 72, 89
Hpy166II GTNNAC 2 cut(s) 679, 1554
Hpy188I TCNGA 7 cut(s) 381, 463, 1434, 1476, 1681, 1746, 1765
Hpy188III TCNNGA 8 cut(s) 22, 62, 439, 698, 1064, 1096, 1272, 1394
Hpy8I GTNNAC 2 cut(s) 679, 1554
HpyAV CCTTC 5 cut(s) 442, 468, 1075, 1357, 1429
HpyCH4III ACNGT 4 cut(s) 294, 535, 937, 1514
HpyCH4V TGCA 8 cut(s) 250, 274, 486, 725, 864, 1053, 1088, 1108
HpyF10VI GCNNNNNNNGC 2 cut(s) 285, 1364
HpyF3I CTNAG 7 cut(s) 20, 201, 306, 659, 1305, 1598, 1678
Hsp92II CATG 8 cut(s) 65, 176, 391, 1081, 1371, 1612, 1634, 1742
Kzo9I GATC 9 cut(s) 665, 1092, 1286, 1429, 1457, 1506, 1627, 1642, 1741
LmnI GCTCC 3 cut(s) 525, 819, 1387
Lsp1109I GCAGC 4 cut(s) 737, 1072, 1107, 1367
LweI GCATC 4 cut(s) 38, 292, 635, 816
MaeI CTAG 2 cut(s) 132, 282
MaeIII GTNAC 3 cut(s) 230, 404, 954
MalI GATC 9 cut(s) 667, 1094, 1288, 1431, 1459, 1508, 1629, 1644, 1743
MboI GATC 9 cut(s) 665, 1092, 1286, 1429, 1457, 1506, 1627, 1642, 1741
MfeI CAATTG 2 cut(s) 102, 1615
MhlI GDGCHC 2 cut(s) 1139, 1664
MmeI TCCRAC 3 cut(s) 243, 550, 1365
MnlI CCTC 6 cut(s) 278, 589, 778, 1367, 1476, 1737
Mph1103I ATGCAT 1 cut(s) 1055
MroXI GAANNNNTTC 2 cut(s) 1260, 1452
MseI TTAA 4 cut(s) 417, 794, 1043, 1226
MslI CAYNNNNRTG 1 cut(s) 149
MspI CCGG 3 cut(s) 823, 1019, 1722
MspR9I CCNGG 2 cut(s) 1208, 1647
MunI CAATTG 2 cut(s) 102, 1615
Mva1269I GAATGC 1 cut(s) 1108
MvaI CCWGG 2 cut(s) 1208, 1647
MwoI GCNNNNNNNGC 2 cut(s) 285, 1364
NcoI CCATGG 1 cut(s) 387
NdeI CATATG 1 cut(s) 1541
NdeII GATC 9 cut(s) 665, 1092, 1286, 1429, 1457, 1506, 1627, 1642, 1741
NlaIII CATG 8 cut(s) 65, 176, 391, 1081, 1371, 1612, 1634, 1742
NlaIV GGNNCC 3 cut(s) 156, 456, 821
NsiI ATGCAT 1 cut(s) 1055
NspI RCATGY 2 cut(s) 1371, 1612
PagI TCATGA 1 cut(s) 61
PcsI WCGNNNNNNNCGW 2 cut(s) 400, 929
PctI GAATGC 1 cut(s) 1108
PdmI GAANNNNTTC 2 cut(s) 1260, 1452
PfeI GAWTC 5 cut(s) 376, 553, 1015, 1256, 1760
PfoI TCCNGGA 1 cut(s) 1206
PkrI GCNGC 5 cut(s) 256, 727, 1087, 1122, 1357
PshBI ATTAAT 1 cut(s) 417
PsiI TTATAA 1 cut(s) 1694
Psp6I CCWGG 2 cut(s) 1206, 1645
PspGI CCWGG 2 cut(s) 1206, 1645
PspN4I GGNNCC 3 cut(s) 156, 456, 821
PspPI GGNCC 3 cut(s) 154, 1545, 1724
PstI CTGCAG 1 cut(s) 1090
RsaI GTAC 3 cut(s) 217, 1202, 1707
RsaNI GTAC 3 cut(s) 216, 1201, 1706
RseI CAYNNNNRTG 1 cut(s) 149
SaqAI TTAA 4 cut(s) 417, 794, 1043, 1226
SatI GCNGC 5 cut(s) 255, 726, 1086, 1121, 1356
Sau3AI GATC 9 cut(s) 665, 1092, 1286, 1429, 1457, 1506, 1627, 1642, 1741
Sau96I GGNCC 3 cut(s) 154, 1545, 1724
ScrFI CCNGG 2 cut(s) 1208, 1647
SduI GDGCHC 2 cut(s) 1139, 1664
SfaNI GCATC 4 cut(s) 38, 292, 635, 816
SfcI CTRYAG 1 cut(s) 1086
SinI GGWCC 2 cut(s) 1545, 1724
SmiMI CAYNNNNRTG 1 cut(s) 149
SmlI CTYRAG 1 cut(s) 1728
SmoI CTYRAG 1 cut(s) 1728
SsiI CCGC 2 cut(s) 254, 1557
SspI AATATT 1 cut(s) 313
SspMI CTAG 2 cut(s) 132, 282
StyD4I CCNGG 2 cut(s) 1206, 1645
StyI CCWWGG 1 cut(s) 387
TaaI ACNGT 4 cut(s) 294, 535, 937, 1514
TaqI TCGA 6 cut(s) 194, 438, 604, 664, 1372, 1456
TatI WGTACW 1 cut(s) 1705
TauI GCSGC 1 cut(s) 257
TfiI GAWTC 5 cut(s) 376, 553, 1015, 1256, 1760
Tru1I TTAA 4 cut(s) 417, 794, 1043, 1226
Tru9I TTAA 4 cut(s) 417, 794, 1043, 1226
TscAI CASTG 2 cut(s) 871, 948
TseI GCWGC 4 cut(s) 725, 1085, 1120, 1355
TspGWI ACGGA 2 cut(s) 1395, 1502
TspRI CASTG 2 cut(s) 871, 948
VpaK11BI GGWCC 2 cut(s) 1545, 1724
VspI ATTAAT 1 cut(s) 417
XapI RAATTY 7 cut(s) 177, 422, 790, 1028, 1039, 1267, 1470
XceI RCATGY 2 cut(s) 1371, 1612
XmnI GAANNNNTTC 2 cut(s) 1260, 1452
XspI CTAG 2 cut(s) 132, 282
Zsp2I ATGCAT 1 cut(s) 1055
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.