Rroxscaffold_6G00401770
ERF Family

mTERF

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0001228
Physical Location & Seq
Reverse (-)
24159031 .. 24160798
1768 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00401770.1

Sequence Viewer

Length: 1518 bp
ATGACCCATTTGCATAGCCTCAGAAATGCATCTATTCTCAAATGGGTTTCTTCAAATATTGCTCAAAACCACCTAAGATCATCAAGAACCCCACTTCAGCCAATCGGGTCTTTCCCCAATTCTCATGCCATCGGGCTTTACAGTACCAAAACAGCTCTTGAAGCTGAAAACCCTGAAAACTTGGATATAACTTGGACTTCTAGTGGAAAAAATGGAGGGGGATTTCTAGAGTTATTCGAAAAGAAGCCCAGGCTGCATTATGATGGTTTGTTGCTTCACAATTATACTGTTTTGTGTAGTTATGGGGTTTCACGTAGCAAGATAGGAAAGATTTATAAAGAAGCAACACAAGTGTTTCGATATGATTTTGAGGTGTTGCTATCGAAACTTCAGGCTTATGAAGAACTAGGTCTCAGCCAATTTGCTTTAGTTAAGTTTATTGTTTGCAGCCCTTATATTTTAGTTGGGGATGTAAATGTGCCATTTGTTAAGGTACTAGAAAAGTTGAAGAGTTTGGGGTTTGAGACCTATTGGATTGAAAGGAATTTATCAGAAGAGAATATTTATAGTTGGAGCCGAATGCTTGAAGTGCTAAGGTTGTTTAATGAGATGGGTTGCAGCAACGTGCAGTTGGTTGAATTACTTGGCCAGCATCCGGATATTTTATTTGAGAGTTCAGGAGAAACGACACTTCTGTTAATTGGGTTCTTACTGAAGTTTGGATCCACAAGGAGCCAAATATGTTCAATGTTTCTGCAGTTTCCACAAATTCAGATTATGCAATTTGTTCTGAATTTGAGGAAATGTGTTTTGGTCCTAAATGAGATTGAGATGGAGGTTGCAGAGATTCAGAAGATTGTTTGTTCACACCCCCTGCTACTGGGTTCGTGTGCTCTGAAAAGCACTAACAGCTTACTTTCTTACTTGAAGATTGGGAAGAAGCGTCTGTCTAGGTACATACAGGAGAACCCTGAAGCATTAAAGAAATGGGTTCTAGGTAGAAGAGTTGAGCCACTTCCAGACTCGGAAGAGGACTCAAAGGGAAAGAGAATTAAGTTCTTGTTAGACATAGGATTTGTAGAGAACTCAAACAAAATGAAAGAAGCACTAAAGCTATTTCGAGGCAAGGGAGGGGAACTTCAAGACAGATTTGATTGTATAGTGAATTCTGGTTTAAATCGCCAGGATGTCTGTAAAATGATTAAAGTATCCCCTCAAATTCTTAACCAGAAAAGGGATGTGTTACAAATGAAGATTGATGTTCTTGTAAATCATCTGGGTTATCCTGTATCATCTTTGGTGAACTTCCCATCATATCTATCCTATACAACTCAAAGGGTCAAGCTCAGAGTATTCATGTACAATTGGCTCACTGGTCAAGGAACAATAGCCCCTACACTTGCCTTGAGCACTGTCGTTGCAATGGCGGAGAAAACATTTATATCGCAATATGTAAATCATCATCCTTGTGGTCCTCAAGTTTGGCAGGAATTGAAGGGTAAAATGTATTCTTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
mTERF

Protein Analysis

505

Amino Acids

57.56

Weight (kDa)

9.11

Isoelectric Point (pI)

40.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
mTERF PF02536 198 - 361 1.4e-09 mTERF
mTERF PF02536 372 - 480 2.2e-13 mTERF
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 336
AccIII TCCGGA 1 cut(s) 655
AciI CCGC 1 cut(s) 1427
AclWI GGATC 2 cut(s) 717, 730
AcoI YGGCCR 1 cut(s) 646
AcsI RAATTY 5 cut(s) 544, 768, 793, 1165, 1218
AcuI CTGAAG 4 cut(s) 80, 374, 734, 993
AfaI GTAC 4 cut(s) 145, 495, 956, 1361
AfiI CCNNNNNNNGG 3 cut(s) 655, 880, 1234
AjnI CCWGG 2 cut(s) 248, 1182
AjuI GAANNNNNNNTTGG 2 cut(s) 794, 826
AluBI AGCT 5 cut(s) 155, 164, 912, 1114, 1345
AluI AGCT 5 cut(s) 155, 164, 912, 1114, 1345
Alw21I GWGCWC 2 cut(s) 895, 1412
Alw26I GTCTC 2 cut(s) 416, 518
AlwI GGATC 2 cut(s) 717, 730
Aor13HI TCCGGA 1 cut(s) 655
AoxI GGCC 1 cut(s) 646
ApeKI GCWGC 3 cut(s) 253, 447, 618
ApoI RAATTY 5 cut(s) 544, 768, 793, 1165, 1218
ArsI GACNNNNNNTTYG 2 cut(s) 1058, 1090
AspS9I GGNCC 2 cut(s) 814, 1472
AsuHPI GGTGA 1 cut(s) 1312
AsuII TTCGAA 1 cut(s) 237
AvaII GGWCC 2 cut(s) 814, 1472
BalI TGGCCA 1 cut(s) 648
BamHI GGATCC 1 cut(s) 722
Bbv12I GWGCWC 2 cut(s) 895, 1412
BbvI GCAGC 3 cut(s) 240, 459, 630
BccI CCATC 5 cut(s) 137, 257, 604, 826, 1318
BciT130I CCWGG 2 cut(s) 250, 1184
BciVI GTATCC 1 cut(s) 1219
BcoDI GTCTC 2 cut(s) 416, 518
BfaI CTAG 6 cut(s) 201, 227, 407, 497, 951, 995
BfmI CTRYAG 1 cut(s) 755
BfuI GTATCC 1 cut(s) 1219
BisI GCNGC 3 cut(s) 254, 448, 619
BlsI GCNGC 3 cut(s) 255, 449, 620
Bme1390I CCNGG 2 cut(s) 250, 1184
Bme18I GGWCC 2 cut(s) 814, 1472
BmgT120I GGNCC 2 cut(s) 814, 1472
BmiI GGNNCC 3 cut(s) 575, 724, 734
BmrFI CCNGG 2 cut(s) 250, 1184
BmrI ACTGGG 1 cut(s) 890
BmsI GCATC 2 cut(s) 38, 661
BmuI ACTGGG 1 cut(s) 890
Bpu10I CCTNAGC 1 cut(s) 593
Bpu14I TTCGAA 1 cut(s) 237
BpuEI CTTGAG 2 cut(s) 1426, 1461
BsaAI YACGTR 1 cut(s) 314
BsaI GGTCTC 2 cut(s) 416, 518
BsaJI CCNNGG 1 cut(s) 248
BsaWI WCCGGW 1 cut(s) 655
Bsc4I CCNNNNNNNGG 3 cut(s) 655, 880, 1234
Bse1I ACTGG 2 cut(s) 885, 1378
Bse3DI GCAATG 1 cut(s) 1428
BseAI TCCGGA 1 cut(s) 655
BseBI CCWGG 2 cut(s) 250, 1184
BseDI CCNNGG 1 cut(s) 248
BseGI GGATG 5 cut(s) 475, 652, 1192, 1243, 1462
BseLI CCNNNNNNNGG 3 cut(s) 655, 880, 1234
BseMI GCAATG 1 cut(s) 1428
BseMII CTCAG 3 cut(s) 34, 427, 1360
BseNI ACTGG 2 cut(s) 885, 1378
BseXI GCAGC 3 cut(s) 240, 459, 630
BsgI GTGCAG 1 cut(s) 647
BshFI GGCC 1 cut(s) 648
BsiHKAI GWGCWC 2 cut(s) 895, 1412
BsiSI CCGG 1 cut(s) 656
BslI CCNNNNNNNGG 3 cut(s) 655, 880, 1234
BsmAI GTCTC 2 cut(s) 416, 518
BsmI GAATGC 1 cut(s) 585
BsnI GGCC 1 cut(s) 648
Bso31I GGTCTC 2 cut(s) 416, 518
Bsp119I TTCGAA 1 cut(s) 237
Bsp1286I GDGCHC 2 cut(s) 895, 1412
Bsp13I TCCGGA 1 cut(s) 655
Bsp1407I TGTACA 1 cut(s) 1359
Bsp143I GATC 2 cut(s) 77, 722
BspACI CCGC 1 cut(s) 1427
BspANI GGCC 1 cut(s) 648
BspCNI CTCAG 3 cut(s) 33, 426, 1359
BspEI TCCGGA 1 cut(s) 655
BspLI GGNNCC 3 cut(s) 575, 724, 734
BspMAI CTGCAG 1 cut(s) 759
BspPI GGATC 2 cut(s) 717, 730
BspT104I TTCGAA 1 cut(s) 237
BspTNI GGTCTC 2 cut(s) 416, 518
BsrDI GCAATG 1 cut(s) 1428
BsrGI TGTACA 1 cut(s) 1359
BsrI ACTGG 2 cut(s) 885, 1378
BssECI CCNNGG 1 cut(s) 248
BssMI GATC 2 cut(s) 77, 722
Bst2UI CCWGG 2 cut(s) 250, 1184
Bst4CI ACNGT 3 cut(s) 143, 289, 1414
Bst6I CTCTTC 4 cut(s) 503, 549, 997, 1023
BstAUI TGTACA 1 cut(s) 1359
BstBAI YACGTR 1 cut(s) 314
BstBI TTCGAA 1 cut(s) 237
BstC8I GCNNGC 1 cut(s) 650
BstDEI CTNAG 5 cut(s) 20, 74, 413, 593, 1346
BstF5I GGATG 5 cut(s) 475, 652, 1192, 1243, 1462
BstKTI GATC 2 cut(s) 80, 725
BstMAI GTCTC 2 cut(s) 416, 518
BstMBI GATC 2 cut(s) 77, 722
BstMWI GCNNNNNNNGC 4 cut(s) 161, 253, 589, 909
BstNI CCWGG 2 cut(s) 250, 1184
BstSCI CCNGG 2 cut(s) 248, 1182
BstSFI CTRYAG 1 cut(s) 755
BstV1I GCAGC 3 cut(s) 240, 459, 630
BstX2I RGATCY 1 cut(s) 722
BstYI RGATCY 1 cut(s) 722
BsuI GTATCC 1 cut(s) 1219
BsuRI GGCC 1 cut(s) 648
BtsCI GGATG 5 cut(s) 475, 652, 1192, 1243, 1462
BtsIMutI CAGTG 2 cut(s) 1371, 1410
Cac8I GCNNGC 1 cut(s) 650
Cfr13I GGNCC 2 cut(s) 814, 1472
CseI GACGC 1 cut(s) 932
Csp6I GTAC 4 cut(s) 144, 494, 955, 1360
CviAII CATG 2 cut(s) 125, 1357
CviQI GTAC 4 cut(s) 144, 494, 955, 1360
DdeI CTNAG 5 cut(s) 20, 74, 413, 593, 1346
DpnI GATC 2 cut(s) 79, 724
DpnII GATC 2 cut(s) 77, 722
DraI TTTAAA 1 cut(s) 1176
EaeI YGGCCR 1 cut(s) 646
Eam1104I CTCTTC 4 cut(s) 503, 549, 997, 1023
EarI CTCTTC 4 cut(s) 503, 549, 997, 1023
EciI GGCGGA 1 cut(s) 1442
Eco31I GGTCTC 2 cut(s) 416, 518
Eco47I GGWCC 2 cut(s) 814, 1472
Eco57I CTGAAG 4 cut(s) 80, 374, 734, 993
EcoRI GAATTC 1 cut(s) 1165
EcoRII CCWGG 2 cut(s) 248, 1182
EcoT22I ATGCAT 1 cut(s) 31
FaeI CATG 2 cut(s) 128, 1360
FatI CATG 2 cut(s) 124, 1356
Fnu4HI GCNGC 3 cut(s) 254, 448, 619
FokI GGATG 5 cut(s) 482, 639, 1199, 1250, 1449
Fsp4HI GCNGC 3 cut(s) 254, 448, 619
FspBI CTAG 6 cut(s) 201, 227, 407, 497, 951, 995
GluI GCNGC 3 cut(s) 254, 448, 619
HaeIII GGCC 1 cut(s) 648
HapII CCGG 1 cut(s) 656
HgaI GACGC 1 cut(s) 932
Hin1II CATG 2 cut(s) 128, 1360
HinfI GANTC 3 cut(s) 847, 1022, 1034
HpaII CCGG 1 cut(s) 656
HphI GGTGA 1 cut(s) 1312
Hpy166II GTNNAC 2 cut(s) 866, 1303
Hpy188I TCNGA 8 cut(s) 23, 553, 774, 792, 852, 897, 1027, 1349
Hpy188III TCNNGA 7 cut(s) 84, 158, 227, 656, 678, 1019, 1142
Hpy8I GTNNAC 2 cut(s) 866, 1303
HpyAV CCTTC 1 cut(s) 1489
HpyCH4III ACNGT 3 cut(s) 143, 289, 1414
HpyCH4IV ACGT 2 cut(s) 313, 624
HpyF10VI GCNNNNNNNGC 4 cut(s) 161, 253, 589, 909
HpyF3I CTNAG 5 cut(s) 20, 74, 413, 593, 1346
HpySE526I ACGT 2 cut(s) 313, 624
Hsp92II CATG 2 cut(s) 128, 1360
Kpn2I TCCGGA 1 cut(s) 655
Kzo9I GATC 2 cut(s) 77, 722
LmnI GCTCC 2 cut(s) 573, 732
Lsp1109I GCAGC 3 cut(s) 240, 459, 630
LweI GCATC 2 cut(s) 38, 661
MaeI CTAG 6 cut(s) 201, 227, 407, 497, 951, 995
MaeII ACGT 2 cut(s) 313, 624
MaeIII GTNAC 1 cut(s) 1242
MalI GATC 2 cut(s) 79, 724
MboI GATC 2 cut(s) 77, 722
MfeI CAATTG 1 cut(s) 1363
MflI RGATCY 1 cut(s) 722
MhlI GDGCHC 2 cut(s) 895, 1412
MlsI TGGCCA 1 cut(s) 648
MluNI TGGCCA 1 cut(s) 648
MlyI GAGTC 2 cut(s) 1016, 1028
MmeI TCCRAC 1 cut(s) 551
Mox20I TGGCCA 1 cut(s) 648
Mph1103I ATGCAT 1 cut(s) 31
MroI TCCGGA 1 cut(s) 655
MscI TGGCCA 1 cut(s) 648
MseI TTAA 9 cut(s) 432, 489, 603, 698, 980, 1053, 1175, 1203, 1224
MslI CAYNNNNRTG 2 cut(s) 261, 1467
Msp20I TGGCCA 1 cut(s) 648
MspI CCGG 1 cut(s) 656
MspR9I CCNGG 2 cut(s) 250, 1184
MunI CAATTG 1 cut(s) 1363
Mva1269I GAATGC 1 cut(s) 585
MvaI CCWGG 2 cut(s) 250, 1184
MwoI GCNNNNNNNGC 4 cut(s) 161, 253, 589, 909
NdeII GATC 2 cut(s) 77, 722
NlaIII CATG 2 cut(s) 128, 1360
NlaIV GGNNCC 3 cut(s) 575, 724, 734
NsiI ATGCAT 1 cut(s) 31
NspV TTCGAA 1 cut(s) 237
PctI GAATGC 1 cut(s) 585
PfeI GAWTC 1 cut(s) 847
PkrI GCNGC 3 cut(s) 255, 449, 620
PleI GAGTC 2 cut(s) 1016, 1028
PpsI GAGTC 2 cut(s) 1016, 1028
Ppu21I YACGTR 1 cut(s) 314
PsiI TTATAA 1 cut(s) 336
Psp6I CCWGG 2 cut(s) 248, 1182
PspGI CCWGG 2 cut(s) 248, 1182
PspN4I GGNNCC 3 cut(s) 575, 724, 734
PspPI GGNCC 2 cut(s) 814, 1472
PstI CTGCAG 1 cut(s) 759
PsuI RGATCY 1 cut(s) 722
RsaI GTAC 4 cut(s) 145, 495, 956, 1361
RsaNI GTAC 4 cut(s) 144, 494, 955, 1360
RseI CAYNNNNRTG 2 cut(s) 261, 1467
SaqAI TTAA 9 cut(s) 432, 489, 603, 698, 980, 1053, 1175, 1203, 1224
SatI GCNGC 3 cut(s) 254, 448, 619
Sau3AI GATC 2 cut(s) 77, 722
Sau96I GGNCC 2 cut(s) 814, 1472
SchI GAGTC 2 cut(s) 1016, 1028
ScrFI CCNGG 2 cut(s) 250, 1184
SduI GDGCHC 2 cut(s) 895, 1412
SfaNI GCATC 2 cut(s) 38, 661
SfcI CTRYAG 1 cut(s) 755
SfuI TTCGAA 1 cut(s) 237
SinI GGWCC 2 cut(s) 814, 1472
SmiMI CAYNNNNRTG 2 cut(s) 261, 1467
SmlI CTYRAG 2 cut(s) 1405, 1476
SmoI CTYRAG 2 cut(s) 1405, 1476
SsiI CCGC 1 cut(s) 1427
SspI AATATT 2 cut(s) 58, 562
SspMI CTAG 6 cut(s) 201, 227, 407, 497, 951, 995
StyD4I CCNGG 2 cut(s) 248, 1182
TaaI ACNGT 3 cut(s) 143, 289, 1414
TaiI ACGT 2 cut(s) 316, 627
TaqI TCGA 4 cut(s) 237, 358, 383, 1120
TatI WGTACW 1 cut(s) 1359
TfiI GAWTC 1 cut(s) 847
Tru1I TTAA 9 cut(s) 432, 489, 603, 698, 980, 1053, 1175, 1203, 1224
Tru9I TTAA 9 cut(s) 432, 489, 603, 698, 980, 1053, 1175, 1203, 1224
TscAI CASTG 2 cut(s) 1378, 1417
TseI GCWGC 3 cut(s) 253, 447, 618
TspDTI ATGAA 4 cut(s) 414, 1112, 1265, 1345
TspRI CASTG 2 cut(s) 1378, 1417
VpaK11BI GGWCC 2 cut(s) 814, 1472
XapI RAATTY 5 cut(s) 544, 768, 793, 1165, 1218
XbaI TCTAGA 1 cut(s) 226
XspI CTAG 6 cut(s) 201, 227, 407, 497, 951, 995
Zsp2I ATGCAT 1 cut(s) 31
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.