Rroxscaffold_6G00401780
ERF Family

Transcription termination factor family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0001228
Physical Location & Seq
Reverse (-)
24162962 .. 24165029
2068 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00401780.1

Sequence Viewer

Length: 627 bp
ATGACCCATTTGCATAAGTTGAGAACAGCATCCATTCTCAAATGGGTCTCTTCAAATTTTGATGAAAACCACTTCAGACTGTTAGGAACCCAAACCCCTAGACTTTACAGAACTAAAAGGAACCCTGCAACTGAAACTTGTGAAATTACTTTGCCTGAAAATGCTGGTCGAGTTTCTCGTGCTGTTCGACAAGAAGCGCAAGCTGCATTGTTGGACTATTTGTATGGTAATAGAGGCTTGCACTTTGCGGATGCAGAGAATATGAGCAAAAACTCACCGCATTTTCTCAACAAGCTTTTGAAATGCGTTGGTAATGAGAAGGAAATCCGGCAGTCGGTTTCCCGGTACTTGCTTTACCACCCTGTTAATGAGTTTGAGCCTTTCTTTGAGAGTTTGGGTTTGAAACCTTCAGAGTATGTTCATTTTCTTCCACCTAATTCGATGTTCTTGATCGATGAGAGTCTGTTGCTTCACAATTATGCTGTTTTGTGCCAGTTTGGGGTTGCGCGTAATAGGATAGGGAAGATATACAAGGAAGCTACAGAGAAGTTTTTCGATATGATTTTAAGGTTTTGCAATCAAAACTTCGAGCTTATGAAGAACTGGGTCTCAGTCGATATGCTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
mTERF

Protein Analysis

208

Amino Acids

24.29

Weight (kDa)

8.86

Isoelectric Point (pI)

34.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 508
AciI CCGC 2 cut(s) 248, 278
AcsI RAATTY 1 cut(s) 55
AcuI CTGAAG 2 cut(s) 58, 393
AfaI GTAC 1 cut(s) 347
AfiI CCNNNNNNNGG 2 cut(s) 334, 499
AgsI TTSAA 3 cut(s) 54, 301, 403
AluBI AGCT 4 cut(s) 203, 295, 539, 592
AluI AGCT 4 cut(s) 203, 295, 539, 592
Alw26I GTCTC 2 cut(s) 52, 613
ApeKI GCWGC 1 cut(s) 203
ApoI RAATTY 1 cut(s) 55
Asp700I GAANNNNTTC 1 cut(s) 551
AspLEI GCGC 2 cut(s) 199, 508
AsuC2I CCSGG 1 cut(s) 343
AsuHPI GGTGA 1 cut(s) 267
BauI CACGAG 1 cut(s) 177
BbvI GCAGC 1 cut(s) 190
BcnI CCSGG 1 cut(s) 343
BcoDI GTCTC 2 cut(s) 52, 613
BfaI CTAG 1 cut(s) 99
BfmI CTRYAG 1 cut(s) 540
BisI GCNGC 1 cut(s) 204
BlsI GCNGC 1 cut(s) 205
Bme1390I CCNGG 1 cut(s) 343
BmiI GGNNCC 2 cut(s) 88, 122
BmrFI CCNGG 1 cut(s) 343
BmrI ACTGGG 1 cut(s) 613
BmsI GCATC 2 cut(s) 38, 241
BmuI ACTGGG 1 cut(s) 613
BpuMI CCSGG 1 cut(s) 343
Bsa29I ATCGAT 1 cut(s) 453
BsaI GGTCTC 2 cut(s) 52, 613
Bsc4I CCNNNNNNNGG 2 cut(s) 334, 499
Bse1I ACTGG 2 cut(s) 493, 608
BseCI ATCGAT 1 cut(s) 453
BseGI GGATG 2 cut(s) 29, 256
BseLI CCNNNNNNNGG 2 cut(s) 334, 499
BseMII CTCAG 1 cut(s) 624
BseNI ACTGG 2 cut(s) 493, 608
BseXI GCAGC 1 cut(s) 190
Bsh1236I CGCG 1 cut(s) 508
BshVI ATCGAT 1 cut(s) 453
BsiSI CCGG 2 cut(s) 328, 343
BslI CCNNNNNNNGG 2 cut(s) 334, 499
BsmAI GTCTC 2 cut(s) 52, 613
Bso31I GGTCTC 2 cut(s) 52, 613
Bsp143I GATC 1 cut(s) 450
BspACI CCGC 2 cut(s) 248, 278
BspCNI CTCAG 1 cut(s) 623
BspDI ATCGAT 1 cut(s) 453
BspFNI CGCG 1 cut(s) 508
BspLI GGNNCC 2 cut(s) 88, 122
BspTNI GGTCTC 2 cut(s) 52, 613
BsrI ACTGG 2 cut(s) 493, 608
BssMI GATC 1 cut(s) 450
BssSI CACGAG 1 cut(s) 177
Bst2BI CACGAG 1 cut(s) 177
Bst4CI ACNGT 1 cut(s) 81
Bst6I CTCTTC 1 cut(s) 55
BstC8I GCNNGC 2 cut(s) 201, 239
BstDEI CTNAG 1 cut(s) 610
BstF5I GGATG 2 cut(s) 29, 256
BstFNI CGCG 1 cut(s) 508
BstHHI GCGC 2 cut(s) 199, 508
BstKTI GATC 1 cut(s) 453
BstMAI GTCTC 2 cut(s) 52, 613
BstMBI GATC 1 cut(s) 450
BstMWI GCNNNNNNNGC 1 cut(s) 203
BstSCI CCNGG 1 cut(s) 341
BstSFI CTRYAG 1 cut(s) 540
BstUI CGCG 1 cut(s) 508
BstV1I GCAGC 1 cut(s) 190
Bsu15I ATCGAT 1 cut(s) 453
BsuTUI ATCGAT 1 cut(s) 453
BtsCI GGATG 2 cut(s) 29, 256
Cac8I GCNNGC 2 cut(s) 201, 239
CfoI GCGC 2 cut(s) 199, 508
ClaI ATCGAT 1 cut(s) 453
Csp6I GTAC 1 cut(s) 346
CviJI RGCY 6 cut(s) 203, 237, 295, 379, 539, 592
CviKI_1 RGCY 6 cut(s) 203, 237, 295, 379, 539, 592
CviQI GTAC 1 cut(s) 346
DdeI CTNAG 1 cut(s) 610
DpnI GATC 1 cut(s) 452
DpnII GATC 1 cut(s) 450
Eam1104I CTCTTC 1 cut(s) 55
EarI CTCTTC 1 cut(s) 55
Eco31I GGTCTC 2 cut(s) 52, 613
Eco57I CTGAAG 2 cut(s) 58, 393
FaiI YATR 9 cut(s) 15, 225, 263, 417, 480, 529, 560, 596, 620
Fnu4HI GCNGC 1 cut(s) 204
FokI GGATG 2 cut(s) 16, 263
Fsp4HI GCNGC 1 cut(s) 204
FspBI CTAG 1 cut(s) 99
GlaI GCGC 2 cut(s) 198, 507
GluI GCNGC 1 cut(s) 204
HapII CCGG 2 cut(s) 328, 343
HhaI GCGC 2 cut(s) 199, 508
Hin6I GCGC 2 cut(s) 197, 506
HinP1I GCGC 2 cut(s) 197, 506
HindIII AAGCTT 1 cut(s) 293
HinfI GANTC 1 cut(s) 460
HpaII CCGG 2 cut(s) 328, 343
HphI GGTGA 1 cut(s) 267
Hpy188I TCNGA 2 cut(s) 77, 412
Hpy188III TCNNGA 1 cut(s) 448
HpyAV CCTTC 2 cut(s) 313, 417
HpyCH4III ACNGT 1 cut(s) 81
HpyCH4V TGCA 6 cut(s) 13, 128, 206, 241, 254, 576
HpyF10VI GCNNNNNNNGC 1 cut(s) 203
HpyF3I CTNAG 1 cut(s) 610
HspAI GCGC 2 cut(s) 197, 506
Kzo9I GATC 1 cut(s) 450
LpnPI CCDG 8 cut(s) 138, 150, 168, 341, 356, 375, 506, 589
Lsp1109I GCAGC 1 cut(s) 190
LweI GCATC 2 cut(s) 38, 241
MaeI CTAG 1 cut(s) 99
MalI GATC 1 cut(s) 452
MboI GATC 1 cut(s) 450
MboII GAAGA 4 cut(s) 42, 419, 535, 610
MluCI AATT 4 cut(s) 55, 144, 436, 475
MlyI GAGTC 1 cut(s) 469
MmeI TCCRAC 1 cut(s) 192
MnlI CCTC 1 cut(s) 227
MroXI GAANNNNTTC 1 cut(s) 551
MseI TTAA 2 cut(s) 366, 566
MslI CAYNNNNRTG 1 cut(s) 477
MspI CCGG 2 cut(s) 328, 343
MspR9I CCNGG 1 cut(s) 343
MvnI CGCG 1 cut(s) 508
MwoI GCNNNNNNNGC 1 cut(s) 203
NciI CCSGG 1 cut(s) 343
NdeII GATC 1 cut(s) 450
NlaIV GGNNCC 2 cut(s) 88, 122
PcsI WCGNNNNNNNCGW 2 cut(s) 175, 184
PdmI GAANNNNTTC 1 cut(s) 551
PkrI GCNGC 1 cut(s) 205
PleI GAGTC 1 cut(s) 468
PpsI GAGTC 1 cut(s) 468
PspN4I GGNNCC 2 cut(s) 88, 122
RsaI GTAC 1 cut(s) 347
RsaNI GTAC 1 cut(s) 346
RseI CAYNNNNRTG 1 cut(s) 477
SaqAI TTAA 2 cut(s) 366, 566
SatI GCNGC 1 cut(s) 204
Sau3AI GATC 1 cut(s) 450
SchI GAGTC 1 cut(s) 469
ScrFI CCNGG 1 cut(s) 343
SetI ASST 7 cut(s) 205, 297, 409, 436, 541, 572, 594
SfaNI GCATC 2 cut(s) 38, 241
SfcI CTRYAG 1 cut(s) 540
SmiMI CAYNNNNRTG 1 cut(s) 477
Sse9I AATT 4 cut(s) 55, 144, 436, 475
SsiI CCGC 2 cut(s) 248, 278
SspMI CTAG 1 cut(s) 99
StyD4I CCNGG 1 cut(s) 341
TaaI ACNGT 1 cut(s) 81
TaqI TCGA 7 cut(s) 169, 187, 440, 453, 555, 588, 615
TasI AATT 4 cut(s) 55, 144, 436, 475
Tru1I TTAA 2 cut(s) 366, 566
Tru9I TTAA 2 cut(s) 366, 566
TseI GCWGC 1 cut(s) 203
TspDTI ATGAA 3 cut(s) 78, 410, 611
XapI RAATTY 1 cut(s) 55
XmnI GAANNNNTTC 1 cut(s) 551
XspI CTAG 1 cut(s) 99
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.