Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001228

Physical Location & Seq

Genomic Coordinates Forward (+)

25901063 .. 25903067

Gene Structure 2005 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ44513

Sequence Viewer

CDS Protein Promoter (2k)

Length: 696 bp

ATGAAGGCTACAGAGATTGGGAAGATTGTTCATTCTCACCCCCTGCTACTGGGTTCGTGCTCTTTGAAAAAAACTAGCAGCTTACTTTGTACTTTGCATGTTGGGAAGAAACGATTGTCTCAGTACATCCAGGAGAACCCACAAGTATTAAAGAATTGGGGTTGGGATAGAAAAATTGAGTCATTTCCAGATTCCGGAGATGAAGTTAGGTCAAAGGCTGAAAGGACTAAGTTCTTGCCAGACATAGGATTTGTAGAAAACTCCAGCAAAATGAAAGCAGCGCTGAAGGCATGTCGAGGCAATGGAGAGGAGCTTCAGGAAAGATTTGATTGTATAGTAAAAGCTGGTTCGGATCGGAAGGATGTCTGTGAACTGATTCAATCATGCCCTCAAAATCCTAACCAGACAACAGATGTGATTGAAATGAAGATCGACTGTCTTGTAAATGAATTGGGTTATCCCATATCATCCTTGTTGACTGCCACAAGATATCTTTCCCATAAAATGGAAAGGGTGAAGCTTAGGGTACGCATGTTCAATTGGCTCAAAGATCATGGAATAGCTGCTCCTGGGCTTTCCTTGAGCACTCTTATTTCTTGCTCAGATAGTTATTTTATAAAGACTTATGTACATCGTCATCCTGCTGGTCCTCAAGTTTGGCACGATTTGAAGAATGAAATTGAATCCAATTGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

mTERF

Protein Analysis

231

Amino Acids

26.13

Weight (kDa)

8.8

Isoelectric Point (pI)

44.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
mTERF	PF02536	102 - 205	9.5e-11	mTERF

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001228)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G06810 AT5G06811
fragaria_vesca	FvH4_6g22600 FvH4_6g22602 FvH4_6g47470
malus_domestica	MD00G1084200.v1.1 MD12G1058200.v1.1 MD14G1059500.v1.1 MD14G1059600.v1.1 MD14G1059700.v1.1 MD14G1059800.v1.1
prunus_persica	Prupe.7G074800_v2.0.a1 Prupe.7G074900_v2.0.a1 Prupe.7G075000_v2.0.a1
pyrus_communis	pycom12g05270 pycom12g05300 pycom14g04840 pycom14g04850
rosa_chinensis	RchiOBHm_Chr3g0480071 RchiOBHm_Chr3g0480081 RchiOBHm_Chr3g0480091 RchiOBHm_Chr3g0480101 RchiOBHm_Chr3g0480171
rosa_laevigata	RLG00000023515 RLG00000023517 RLG00000023518
rosa_multiflora	Rmu_co8013146.1_g000001 Rmu_co8232351.1_g000001 Rmu_sc0006604.1_g000015 Rmu_sc0011261.1_g000005 Rmu_sc0020879.1_g000002 Rmu_sc0020879.1_g000003
rosa_roxburghii	Rroxscaffold_6G00401750 Rroxscaffold_6G00401770 Rroxscaffold_6G00401780
rosa_rugosa	Rorug03G0180700 Rorug03G0180700 Rorug03G0180700
rosa_samantha	Rh3AG231500 Rh3AG231600 Rh3AG231700 Rh3AG231800 Rh3AG232500 Rh3BG263900 Rh3BG264000 Rh3BG264100 Rh3CG261500 Rh3CG261600 Rh3CG261700 Rh3CG261800 Rh3CG262200 Rh3DG257300 Rh3DG257400 Rh3DG257900
rosa_wichuraiana	Rw3G020820 Rw3G020830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	617
AccB7I	CCANNNNNTGG	1 cut(s)	505
AccIII	TCCGGA	1 cut(s)	194
AclWI	GGATC	1 cut(s)	360
AcuI	CTGAAG	2 cut(s)	299, 305
AfaI	GTAC	4 cut(s)	91, 125, 528, 630
AfeI	AGCGCT	1 cut(s)	282
AfiI	CCNNNNNNNGG	4 cut(s)	49, 194, 245, 505
AgsI	TTSAA	6 cut(s)	67, 380, 422, 538, 670, 683
AjnI	CCWGG	2 cut(s)	129, 568
AluBI	AGCT	5 cut(s)	81, 313, 344, 520, 563
AluI	AGCT	5 cut(s)	81, 313, 344, 520, 563
Alw21I	GWGCWC	2 cut(s)	62, 587
Alw26I	GTCTC	1 cut(s)	123
AlwI	GGATC	1 cut(s)	360
Aor13HI	TCCGGA	1 cut(s)	194
Aor51HI	AGCGCT	1 cut(s)	282
ApeKI	GCWGC	3 cut(s)	78, 278, 563
ArsI	GACNNNNNNTTYG	2 cut(s)	233, 265
Asp700I	GAANNNNTTC	1 cut(s)	375
AspLEI	GCGC	1 cut(s)	283
AspS9I	GGNCC	1 cut(s)	647
AsuHPI	GGTGA	2 cut(s)	29, 526
AvaII	GGWCC	1 cut(s)	647
BaeI	ACNNNNGTAYC	2 cut(s)	518, 551
Bbv12I	GWGCWC	2 cut(s)	62, 587
BbvI	GCAGC	3 cut(s)	90, 290, 550
BciT130I	CCWGG	2 cut(s)	131, 570
BcoDI	GTCTC	1 cut(s)	123
BfaI	CTAG	1 cut(s)	75
BfmI	CTRYAG	1 cut(s)	9
BfoI	RGCGCY	1 cut(s)	284
BisI	GCNGC	3 cut(s)	79, 279, 564
BlsI	GCNGC	3 cut(s)	80, 280, 565
Bme1390I	CCNGG	2 cut(s)	131, 570
Bme18I	GGWCC	1 cut(s)	647
BmgT120I	GGNCC	1 cut(s)	647
BmrFI	CCNGG	2 cut(s)	131, 570
BmrI	ACTGGG	1 cut(s)	59
BmuI	ACTGGG	1 cut(s)	59
BpmI	CTGGAG	1 cut(s)	247
Bpu10I	CCTNAGC	1 cut(s)	521
BpuEI	CTTGAG	2 cut(s)	601, 636
BsaJI	CCNNGG	1 cut(s)	569
BsaWI	WCCGGW	1 cut(s)	194
BsaXI	ACNNNNNCTCC	2 cut(s)	189, 219
Bsc4I	CCNNNNNNNGG	4 cut(s)	49, 194, 245, 505
Bse1I	ACTGG	1 cut(s)	54
Bse3DI	GCAATG	1 cut(s)	307
BseAI	TCCGGA	1 cut(s)	194
BseBI	CCWGG	2 cut(s)	131, 570
BseDI	CCNNGG	1 cut(s)	569
BseGI	GGATG	4 cut(s)	126, 367, 467, 637
BseLI	CCNNNNNNNGG	4 cut(s)	49, 194, 245, 505
BseMI	GCAATG	1 cut(s)	307
BseMII	CTCAG	2 cut(s)	134, 615
BseNI	ACTGG	1 cut(s)	54
BseRI	GAGGAG	1 cut(s)	323
BseXI	GCAGC	3 cut(s)	90, 290, 550
BsiHKAI	GWGCWC	2 cut(s)	62, 587
BsiSI	CCGG	1 cut(s)	195
BslI	CCNNNNNNNGG	4 cut(s)	49, 194, 245, 505
BsmAI	GTCTC	1 cut(s)	123
Bsp1286I	GDGCHC	2 cut(s)	62, 587
Bsp13I	TCCGGA	1 cut(s)	194
Bsp1407I	TGTACA	1 cut(s)	628
Bsp143I	GATC	3 cut(s)	352, 429, 550
BspCNI	CTCAG	2 cut(s)	133, 614
BspEI	TCCGGA	1 cut(s)	194
BspPI	GGATC	1 cut(s)	360
BsrDI	GCAATG	1 cut(s)	307
BsrGI	TGTACA	1 cut(s)	628
BsrI	ACTGG	1 cut(s)	54
BssECI	CCNNGG	1 cut(s)	569
BssMI	GATC	3 cut(s)	352, 429, 550
Bst2UI	CCWGG	2 cut(s)	131, 570
Bst4CI	ACNGT	1 cut(s)	437
BstAUI	TGTACA	1 cut(s)	628
BstDEI	CTNAG	4 cut(s)	120, 228, 521, 601
BstF5I	GGATG	4 cut(s)	126, 367, 467, 637
BstH2I	RGCGCY	1 cut(s)	284
BstHHI	GCGC	1 cut(s)	283
BstKTI	GATC	3 cut(s)	355, 432, 553
BstMAI	GTCTC	1 cut(s)	123
BstMBI	GATC	3 cut(s)	352, 429, 550
BstMWI	GCNNNNNNNGC	1 cut(s)	287
BstNI	CCWGG	2 cut(s)	131, 570
BstNSI	RCATGY	3 cut(s)	101, 294, 535
BstSCI	CCNGG	2 cut(s)	129, 568
BstSFI	CTRYAG	1 cut(s)	9
BstV1I	GCAGC	3 cut(s)	90, 290, 550
BtsCI	GGATG	4 cut(s)	126, 367, 467, 637
CfoI	GCGC	1 cut(s)	283
Cfr13I	GGNCC	1 cut(s)	647
Csp6I	GTAC	4 cut(s)	90, 124, 527, 629
CviAII	CATG	5 cut(s)	98, 291, 384, 532, 554
CviJI	RGCY	9 cut(s)	8, 81, 218, 313, 344, 520, 544, 563, 574
CviKI_1	RGCY	9 cut(s)	8, 81, 218, 313, 344, 520, 544, 563, 574
CviQI	GTAC	4 cut(s)	90, 124, 527, 629
DdeI	CTNAG	4 cut(s)	120, 228, 521, 601
DpnI	GATC	3 cut(s)	354, 431, 552
DpnII	GATC	3 cut(s)	352, 429, 550
Eco32I	GATATC	1 cut(s)	491
Eco47I	GGWCC	1 cut(s)	647
Eco47III	AGCGCT	1 cut(s)	282
Eco57I	CTGAAG	2 cut(s)	299, 305
EcoRII	CCWGG	2 cut(s)	129, 568
EcoRV	GATATC	1 cut(s)	491
FaeI	CATG	5 cut(s)	101, 294, 387, 535, 557
FatI	CATG	5 cut(s)	97, 290, 383, 531, 553
Fnu4HI	GCNGC	3 cut(s)	79, 279, 564
FokI	GGATG	4 cut(s)	113, 374, 454, 624
Fsp4HI	GCNGC	3 cut(s)	79, 279, 564
FspBI	CTAG	1 cut(s)	75
GlaI	GCGC	1 cut(s)	282
GluI	GCNGC	3 cut(s)	79, 279, 564
GsuI	CTGGAG	1 cut(s)	247
HaeII	RGCGCY	1 cut(s)	284
HapII	CCGG	1 cut(s)	195
HhaI	GCGC	1 cut(s)	283
Hin1II	CATG	5 cut(s)	101, 294, 387, 535, 557
Hin6I	GCGC	1 cut(s)	281
HinP1I	GCGC	1 cut(s)	281
HincII	GTYRAC	1 cut(s)	477
HindII	GTYRAC	1 cut(s)	477
HindIII	AAGCTT	1 cut(s)	518
HinfI	GANTC	4 cut(s)	179, 191, 376, 683
HpaII	CCGG	1 cut(s)	195
HphI	GGTGA	2 cut(s)	29, 526
Hpy166II	GTNNAC	2 cut(s)	371, 477
Hpy188I	TCNGA	3 cut(s)	352, 357, 604
Hpy188III	TCNNGA	3 cut(s)	188, 195, 317
Hpy8I	GTNNAC	2 cut(s)	371, 477
HpyAV	CCTTC	2 cut(s)	280, 352
HpyCH4III	ACNGT	1 cut(s)	437
HpyCH4V	TGCA	1 cut(s)	97
HpyF10VI	GCNNNNNNNGC	1 cut(s)	287
HpyF3I	CTNAG	4 cut(s)	120, 228, 521, 601
Hsp92II	CATG	5 cut(s)	101, 294, 387, 535, 557
HspAI	GCGC	1 cut(s)	281
Kpn2I	TCCGGA	1 cut(s)	194
Kzo9I	GATC	3 cut(s)	352, 429, 550
LmnI	GCTCC	2 cut(s)	310, 571
Lsp1109I	GCAGC	3 cut(s)	90, 290, 550
MaeI	CTAG	1 cut(s)	75
MalI	GATC	3 cut(s)	354, 431, 552
MboI	GATC	3 cut(s)	352, 429, 550
MboII	GAAGA	4 cut(s)	34, 118, 439, 682
MfeI	CAATTG	2 cut(s)	538, 688
MhlI	GDGCHC	2 cut(s)	62, 587
MluCI	AATT	6 cut(s)	154, 174, 449, 538, 678, 688
MlyI	GAGTC	1 cut(s)	188
MnlI	CCTC	4 cut(s)	290, 301, 399, 660
MroI	TCCGGA	1 cut(s)	194
MroXI	GAANNNNTTC	1 cut(s)	375
MseI	TTAA	1 cut(s)	149
MspI	CCGG	1 cut(s)	195
MspR9I	CCNGG	2 cut(s)	131, 570
MunI	CAATTG	2 cut(s)	538, 688
MvaI	CCWGG	2 cut(s)	131, 570
MwoI	GCNNNNNNNGC	1 cut(s)	287
NdeII	GATC	3 cut(s)	352, 429, 550
NlaIII	CATG	5 cut(s)	101, 294, 387, 535, 557
NspI	RCATGY	3 cut(s)	101, 294, 535
PdmI	GAANNNNTTC	1 cut(s)	375
PfeI	GAWTC	3 cut(s)	191, 376, 683
PflMI	CCANNNNNTGG	1 cut(s)	505
PfoI	TCCNGGA	1 cut(s)	129
PkrI	GCNGC	3 cut(s)	80, 280, 565
PleI	GAGTC	1 cut(s)	187
PpsI	GAGTC	1 cut(s)	187
PsiI	TTATAA	1 cut(s)	617
Psp6I	CCWGG	2 cut(s)	129, 568
PspGI	CCWGG	2 cut(s)	129, 568
PspPI	GGNCC	1 cut(s)	647
RsaI	GTAC	4 cut(s)	91, 125, 528, 630
RsaNI	GTAC	4 cut(s)	90, 124, 527, 629
SaqAI	TTAA	1 cut(s)	149
SatI	GCNGC	3 cut(s)	79, 279, 564
Sau3AI	GATC	3 cut(s)	352, 429, 550
Sau96I	GGNCC	1 cut(s)	647
SchI	GAGTC	1 cut(s)	188
ScrFI	CCNGG	2 cut(s)	131, 570
SduI	GDGCHC	2 cut(s)	62, 587
SetI	ASST	6 cut(s)	83, 212, 315, 346, 522, 565
SfcI	CTRYAG	1 cut(s)	9
SinI	GGWCC	1 cut(s)	647
SmlI	CTYRAG	2 cut(s)	580, 651
SmoI	CTYRAG	2 cut(s)	580, 651
Sse9I	AATT	6 cut(s)	154, 174, 449, 538, 678, 688
SspMI	CTAG	1 cut(s)	75
StyD4I	CCNGG	2 cut(s)	129, 568
TaaI	ACNGT	1 cut(s)	437
TaqI	TCGA	2 cut(s)	295, 432
TasI	AATT	6 cut(s)	154, 174, 449, 538, 678, 688
TatI	WGTACW	3 cut(s)	89, 123, 628
TfiI	GAWTC	3 cut(s)	191, 376, 683
Tru1I	TTAA	1 cut(s)	149
Tru9I	TTAA	1 cut(s)	149
TseI	GCWGC	3 cut(s)	78, 278, 563
TspDTI	ATGAA	7 cut(s)	17, 20, 216, 287, 440, 462, 690
Van91I	CCANNNNNTGG	1 cut(s)	505
VpaK11BI	GGWCC	1 cut(s)	647
XceI	RCATGY	3 cut(s)	101, 294, 535
XmnI	GAANNNNTTC	1 cut(s)	375
XspI	CTAG	1 cut(s)	75

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.