Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0001228

Physical Location & Seq

Genomic Coordinates Forward (+)

6309870 .. 6310337

Gene Structure 468 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1059600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

ATGTTCTTGTTAGACATAGGATTTGTAGAGAACTCAAACAAAATGAAAGTAGCGCAAAAGGCATTTCAAGGCAATGCATGGGAGTTTCAGGAAAGATTTGATTGTATTGTGGAAGCTGGTTTGGATCGCGAGGCTGTCTGCAAAATGATTAAAGCGTACCCTCTAATTCTTAGCCAGTCAAAGGCTGTTATTGAAATGAAGATTGATTTTCTTGTAAATCATTTGCGTTATCCGTTATCAACTGTGCTGACCTTCCCAAGATTTCTTACATATGGAATTAAAAGGGTCAAGCGTAGGGTGTTTATGTACAATTGGCTCAAAGATCAAGGAACGGCAGATCCTAGGTATGCTTTGAGCACTGTTGTTTCGTGTTCAGATGCATGTTTATTAAGGAAGTATGTAAATTGCCATCCTAATGGTCCTGAAGTGTGGGAGGATTTGAAGAATAAAATTCATTTGGAGCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

mTERF

Protein Analysis

156

Amino Acids

18.05

Weight (kDa)

8.97

Isoelectric Point (pI)

45.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
mTERF	PF02536	29 - 127	1.4e-16	mTERF

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001228)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G06810 AT5G06811
fragaria_vesca	FvH4_6g22600 FvH4_6g22602 FvH4_6g47470
malus_domestica	MD00G1084200.v1.1 MD12G1058200.v1.1 MD14G1059500.v1.1 MD14G1059600.v1.1 MD14G1059700.v1.1 MD14G1059800.v1.1
prunus_persica	Prupe.7G074800_v2.0.a1 Prupe.7G074900_v2.0.a1 Prupe.7G075000_v2.0.a1
pyrus_communis	pycom12g05270 pycom12g05300 pycom14g04840 pycom14g04850
rosa_chinensis	RchiOBHm_Chr3g0480071 RchiOBHm_Chr3g0480081 RchiOBHm_Chr3g0480091 RchiOBHm_Chr3g0480101 RchiOBHm_Chr3g0480171
rosa_laevigata	RLG00000023515 RLG00000023517 RLG00000023518
rosa_multiflora	Rmu_co8013146.1_g000001 Rmu_co8232351.1_g000001 Rmu_sc0006604.1_g000015 Rmu_sc0011261.1_g000005 Rmu_sc0020879.1_g000002 Rmu_sc0020879.1_g000003
rosa_roxburghii	Rroxscaffold_6G00401750 Rroxscaffold_6G00401770 Rroxscaffold_6G00401780
rosa_rugosa	Rorug03G0180700 Rorug03G0180700 Rorug03G0180700
rosa_samantha	Rh3AG231500 Rh3AG231600 Rh3AG231700 Rh3AG231800 Rh3AG232500 Rh3BG263900 Rh3BG264000 Rh3BG264100 Rh3CG261500 Rh3CG261600 Rh3CG261700 Rh3CG261800 Rh3CG262200 Rh3DG257300 Rh3DG257400 Rh3DG257900
rosa_wichuraiana	Rw3G020820 Rw3G020830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	129
AclWI	GGATC	2 cut(s)	132, 332
AcsI	RAATTY	1 cut(s)	450
AcuI	CTGAAG	1 cut(s)	444
AfaI	GTAC	2 cut(s)	158, 308
AfiI	CCNNNNNNNGG	1 cut(s)	181
AgsI	TTSAA	3 cut(s)	68, 194, 442
AloI	GAACNNNNNNTCC	2 cut(s)	322, 354
AluBI	AGCT	1 cut(s)	116
AluI	AGCT	1 cut(s)	116
Alw21I	GWGCWC	1 cut(s)	359
AlwI	GGATC	2 cut(s)	132, 332
ApoI	RAATTY	1 cut(s)	450
ArsI	GACNNNNNNTTYG	1 cut(s)	37
AspA2I	CCTAGG	1 cut(s)	341
AspLEI	GCGC	1 cut(s)	55
AspS9I	GGNCC	1 cut(s)	419
AvaII	GGWCC	1 cut(s)	419
AvrII	CCTAGG	1 cut(s)	341
Bbv12I	GWGCWC	1 cut(s)	359
BccI	CCATC	1 cut(s)	417
BceAI	ACGGC	1 cut(s)	348
BfaI	CTAG	1 cut(s)	342
BlnI	CCTAGG	1 cut(s)	341
Bme18I	GGWCC	1 cut(s)	419
BmgT120I	GGNCC	1 cut(s)	419
BmsI	GCATC	1 cut(s)	367
BsaJI	CCNNGG	1 cut(s)	341
Bsc4I	CCNNNNNNNGG	1 cut(s)	181
Bse1I	ACTGG	1 cut(s)	175
Bse3DI	GCAATG	1 cut(s)	79
BseDI	CCNNGG	1 cut(s)	341
BseGI	GGATG	1 cut(s)	409
BseLI	CCNNNNNNNGG	1 cut(s)	181
BseMI	GCAATG	1 cut(s)	79
BseNI	ACTGG	1 cut(s)	175
Bsh1236I	CGCG	1 cut(s)	129
BsiHKAI	GWGCWC	1 cut(s)	359
BslI	CCNNNNNNNGG	1 cut(s)	181
Bsp1286I	GDGCHC	1 cut(s)	359
Bsp1407I	TGTACA	1 cut(s)	306
Bsp143I	GATC	3 cut(s)	124, 322, 337
Bsp68I	TCGCGA	1 cut(s)	129
BspFNI	CGCG	1 cut(s)	129
BspPI	GGATC	2 cut(s)	132, 332
BsrDI	GCAATG	1 cut(s)	79
BsrGI	TGTACA	1 cut(s)	306
BsrI	ACTGG	1 cut(s)	175
BssECI	CCNNGG	1 cut(s)	341
BssMI	GATC	3 cut(s)	124, 322, 337
BssT1I	CCWWGG	1 cut(s)	341
Bst4CI	ACNGT	2 cut(s)	244, 361
BstAUI	TGTACA	1 cut(s)	306
BstDEI	CTNAG	1 cut(s)	170
BstF5I	GGATG	1 cut(s)	409
BstFNI	CGCG	1 cut(s)	129
BstHHI	GCGC	1 cut(s)	55
BstKTI	GATC	3 cut(s)	127, 325, 340
BstMBI	GATC	3 cut(s)	124, 322, 337
BstMWI	GCNNNNNNNGC	1 cut(s)	59
BstNSI	RCATGY	1 cut(s)	384
BstUI	CGCG	1 cut(s)	129
BstX2I	RGATCY	1 cut(s)	337
BstXI	CCANNNNNNTGG	1 cut(s)	416
BstYI	RGATCY	1 cut(s)	337
BtsCI	GGATG	1 cut(s)	409
BtsIMutI	CAGTG	1 cut(s)	357
BtuMI	TCGCGA	1 cut(s)	129
CfoI	GCGC	1 cut(s)	55
Cfr13I	GGNCC	1 cut(s)	419
Csp6I	GTAC	2 cut(s)	157, 307
CviAII	CATG	2 cut(s)	78, 381
CviJI	RGCY	5 cut(s)	116, 134, 174, 185, 316
CviKI_1	RGCY	5 cut(s)	116, 134, 174, 185, 316
CviQI	GTAC	2 cut(s)	157, 307
DdeI	CTNAG	1 cut(s)	170
DpnI	GATC	3 cut(s)	126, 324, 339
DpnII	GATC	3 cut(s)	124, 322, 337
Eco130I	CCWWGG	1 cut(s)	341
Eco47I	GGWCC	1 cut(s)	419
Eco57I	CTGAAG	1 cut(s)	444
EcoT14I	CCWWGG	1 cut(s)	341
EcoT22I	ATGCAT	2 cut(s)	79, 382
ErhI	CCWWGG	1 cut(s)	341
FaeI	CATG	2 cut(s)	81, 384
FaiI	YATR	8 cut(s)	17, 79, 271, 273, 305, 348, 382, 399
FatI	CATG	2 cut(s)	77, 380
FauNDI	CATATG	1 cut(s)	271
FokI	GGATG	1 cut(s)	396
FspBI	CTAG	1 cut(s)	342
GlaI	GCGC	1 cut(s)	54
HhaI	GCGC	1 cut(s)	55
Hin1II	CATG	2 cut(s)	81, 384
Hin6I	GCGC	1 cut(s)	53
HinP1I	GCGC	1 cut(s)	53
Hpy188I	TCNGA	1 cut(s)	376
Hpy188III	TCNNGA	3 cut(s)	89, 128, 422
HpyAV	CCTTC	1 cut(s)	262
HpyCH4III	ACNGT	2 cut(s)	244, 361
HpyCH4V	TGCA	3 cut(s)	77, 141, 380
HpyF10VI	GCNNNNNNNGC	1 cut(s)	59
HpyF3I	CTNAG	1 cut(s)	170
Hsp92II	CATG	2 cut(s)	81, 384
HspAI	GCGC	1 cut(s)	53
Kzo9I	GATC	3 cut(s)	124, 322, 337
LmnI	GCTCC	1 cut(s)	460
LpnPI	CCDG	4 cut(s)	74, 102, 188, 435
LweI	GCATC	1 cut(s)	367
MaeI	CTAG	1 cut(s)	342
MalI	GATC	3 cut(s)	126, 324, 339
MboI	GATC	3 cut(s)	124, 322, 337
MboII	GAAGA	2 cut(s)	211, 454
MfeI	CAATTG	1 cut(s)	310
MflI	RGATCY	1 cut(s)	337
MhlI	GDGCHC	1 cut(s)	359
MluCI	AATT	5 cut(s)	165, 276, 310, 403, 450
MnlI	CCTC	3 cut(s)	124, 171, 427
Mph1103I	ATGCAT	2 cut(s)	79, 382
MseI	TTAA	3 cut(s)	150, 279, 389
MslI	CAYNNNNRTG	1 cut(s)	414
MunI	CAATTG	1 cut(s)	310
MvnI	CGCG	1 cut(s)	129
MwoI	GCNNNNNNNGC	1 cut(s)	59
NdeI	CATATG	1 cut(s)	271
NdeII	GATC	3 cut(s)	124, 322, 337
NlaIII	CATG	2 cut(s)	81, 384
NruI	TCGCGA	1 cut(s)	129
NsiI	ATGCAT	2 cut(s)	79, 382
NspI	RCATGY	1 cut(s)	384
PspPI	GGNCC	1 cut(s)	419
PsuI	RGATCY	1 cut(s)	337
RruI	TCGCGA	1 cut(s)	129
RsaI	GTAC	2 cut(s)	158, 308
RsaNI	GTAC	2 cut(s)	157, 307
RseI	CAYNNNNRTG	1 cut(s)	414
SaqAI	TTAA	3 cut(s)	150, 279, 389
Sau3AI	GATC	3 cut(s)	124, 322, 337
Sau96I	GGNCC	1 cut(s)	419
SduI	GDGCHC	1 cut(s)	359
SetI	ASST	3 cut(s)	118, 254, 347
SfaNI	GCATC	1 cut(s)	367
SinI	GGWCC	1 cut(s)	419
SmiMI	CAYNNNNRTG	1 cut(s)	414
Sse9I	AATT	5 cut(s)	165, 276, 310, 403, 450
SspMI	CTAG	1 cut(s)	342
StyI	CCWWGG	1 cut(s)	341
TaaI	ACNGT	2 cut(s)	244, 361
TasI	AATT	5 cut(s)	165, 276, 310, 403, 450
TatI	WGTACW	1 cut(s)	306
Tru1I	TTAA	3 cut(s)	150, 279, 389
Tru9I	TTAA	3 cut(s)	150, 279, 389
TscAI	CASTG	1 cut(s)	364
TspDTI	ATGAA	3 cut(s)	59, 212, 443
TspGWI	ACGGA	1 cut(s)	222
TspRI	CASTG	1 cut(s)	364
VpaK11BI	GGWCC	1 cut(s)	419
XapI	RAATTY	1 cut(s)	450
XceI	RCATGY	1 cut(s)	384
XmaJI	CCTAGG	1 cut(s)	341
XspI	CTAG	1 cut(s)	342
Zsp2I	ATGCAT	2 cut(s)	79, 382

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.