RchiOBHm_Chr3g0480091
ERF Family

mTERF

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0001228
Physical Location & Seq
Forward (+)
25899864 .. 25901061
1198 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ44512

Sequence Viewer

Length: 882 bp
ATGACCCATTTGCAAAAACTCAGGATAGCATCTATTCCCAGCTGGGTTTCTACTATTTTTCATGAAAATCACCTTAGATCACCAAGAACCCTATTTCAGCCAATTGGGGTTTTCCCCAATGTCCAAATCCCTAGAGTTTACAGCACAAAAATGGCCCCTGAAATTGAAAACCATGAAGTTTTGGTTGAAACTTCGACTGCTAAGGGCAGAAGTGCTACTCGAACTCTTCGTTACATTAAAAAAGAAACGCAGGCTGCATTGTTGGAGTATTTGCACAGTACTAGAGGCTTACATTTCACTGATGCTGAGAATATTAGTAAAAACTGCCCACATTTTCTAGACAAGCTTTTTCAAAGGGCTGATTGTGAGAGAGACATTAGGCGGTCAATTGCTCGGTTCTTGCGGTACCACCCTATTAATGAATTTGAACCCTTCTTTGAGAGCTTGGGTTTGAAACCTTCCGAGTATGTTTCTCTTCTTCCACGCAATTTGATGTATTTGACTGATGATGAGTTGTTGCTTCATAATTATACTGTTTTATCTAATTATGGGATTCCGCCGAATAAGATAGGAAAGATTTACAGGGACGCAACAGAGGTCTTTCAATATGATTTTCAGGTTTTGGCATCAAAACTTCAAGCTTATGAAGAACTAGGTCTTAGCCGTTCTGCTTTAGTTCGCTATGTTGTTGGTAGTCCTTATCTTTTGGTTGGGGATGTCAATGCAGCATTTGTTTCAGTATTGGAAAAATTGAAGAGTATTGGATTTGAAACCAATAGGATTGAGGGGAATTTATGGGAAGATAACACTTATTTCCGCAACCTTATGGGATTGAGGGGAATTTATGTTCACTGTTTCTACAATTTCCGCAGATTCCAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
mTERF

Protein Analysis

293

Amino Acids

34.15

Weight (kDa)

8.98

Isoelectric Point (pI)

39.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 405
AccB1I GGYRCC 1 cut(s) 405
AciI CCGC 5 cut(s) 382, 403, 557, 817, 868
AcsI RAATTY 3 cut(s) 422, 790, 840
AfaI GTAC 2 cut(s) 280, 407
AgsI TTSAA 9 cut(s) 167, 188, 353, 428, 454, 605, 638, 754, 770
AloI GAACNNNNNNTCC 2 cut(s) 831, 863
AluBI AGCT 4 cut(s) 42, 346, 444, 641
AluI AGCT 4 cut(s) 42, 346, 444, 641
Alw26I GTCTC 1 cut(s) 366
AoxI GGCC 1 cut(s) 153
ApeKI GCWGC 2 cut(s) 254, 725
ApoI RAATTY 3 cut(s) 422, 790, 840
AseI ATTAAT 1 cut(s) 417
Asp718I GGTACC 1 cut(s) 405
AspS9I GGNCC 1 cut(s) 154
AsuHPI GGTGA 2 cut(s) 62, 72
BanI GGYRCC 1 cut(s) 405
BbvI GCAGC 2 cut(s) 241, 737
BceAI ACGGC 1 cut(s) 648
BcoDI GTCTC 1 cut(s) 366
BfaI CTAG 4 cut(s) 132, 282, 338, 653
BisI GCNGC 2 cut(s) 255, 726
BlsI GCNGC 2 cut(s) 256, 727
BmcAI AGTACT 1 cut(s) 280
BmgT120I GGNCC 1 cut(s) 154
BmiI GGNNCC 2 cut(s) 156, 407
BmsI GCATC 3 cut(s) 38, 292, 635
Bpu10I CCTNAGC 1 cut(s) 201
Bse1I ACTGG 1 cut(s) 877
BseGI GGATG 1 cut(s) 721
BseMII CTCAG 2 cut(s) 34, 297
BseNI ACTGG 1 cut(s) 877
BseXI GCAGC 2 cut(s) 241, 737
BseYI CCCAGC 2 cut(s) 38, 42
BshFI GGCC 1 cut(s) 155
BshNI GGYRCC 1 cut(s) 405
BslFI GGGAC 1 cut(s) 599
BsmAI GTCTC 1 cut(s) 366
BsmFI GGGAC 1 cut(s) 599
BsnI GGCC 1 cut(s) 155
Bsp143I GATC 1 cut(s) 77
BspACI CCGC 5 cut(s) 382, 403, 557, 817, 868
BspANI GGCC 1 cut(s) 155
BspCNI CTCAG 2 cut(s) 33, 298
BspHI TCATGA 1 cut(s) 61
BspLI GGNNCC 2 cut(s) 156, 407
BspT107I GGYRCC 1 cut(s) 405
BsrI ACTGG 1 cut(s) 877
BssMI GATC 1 cut(s) 77
Bst4CI ACNGT 3 cut(s) 278, 535, 854
Bst6I CTCTTC 3 cut(s) 231, 480, 749
BstC8I GCNNGC 1 cut(s) 252
BstDEI CTNAG 5 cut(s) 20, 74, 201, 306, 659
BstF5I GGATG 1 cut(s) 721
BstKTI GATC 1 cut(s) 80
BstMAI GTCTC 1 cut(s) 366
BstMBI GATC 1 cut(s) 77
BstV1I GCAGC 2 cut(s) 241, 737
BsuRI GGCC 1 cut(s) 155
BtsCI GGATG 1 cut(s) 721
BtsIMutI CAGTG 2 cut(s) 297, 850
Cac8I GCNNGC 1 cut(s) 252
CciI TCATGA 1 cut(s) 61
Cfr13I GGNCC 1 cut(s) 154
CseI GACGC 1 cut(s) 596
Csp6I GTAC 2 cut(s) 279, 406
CspCI CAANNNNNGTGG 2 cut(s) 471, 506
CviAII CATG 2 cut(s) 62, 173
CviQI GTAC 2 cut(s) 279, 406
DdeI CTNAG 5 cut(s) 20, 74, 201, 306, 659
DpnI GATC 1 cut(s) 79
DpnII GATC 1 cut(s) 77
Eam1104I CTCTTC 3 cut(s) 231, 480, 749
EarI CTCTTC 3 cut(s) 231, 480, 749
EciI GGCGGA 1 cut(s) 546
FaeI CATG 2 cut(s) 65, 176
FaqI GGGAC 1 cut(s) 599
FatI CATG 2 cut(s) 61, 172
Fnu4HI GCNGC 2 cut(s) 255, 726
FokI GGATG 1 cut(s) 728
Fsp4HI GCNGC 2 cut(s) 255, 726
FspBI CTAG 4 cut(s) 132, 282, 338, 653
GluI GCNGC 2 cut(s) 255, 726
GsaI CCCAGC 2 cut(s) 42, 46
HaeIII GGCC 1 cut(s) 155
HgaI GACGC 1 cut(s) 596
Hin1II CATG 2 cut(s) 65, 176
HindIII AAGCTT 2 cut(s) 344, 639
HinfI GANTC 2 cut(s) 553, 873
HphI GGTGA 2 cut(s) 62, 72
Hpy166II GTNNAC 2 cut(s) 139, 850
Hpy188I TCNGA 1 cut(s) 463
Hpy188III TCNNGA 3 cut(s) 22, 62, 338
Hpy8I GTNNAC 2 cut(s) 139, 850
HpyAV CCTTC 2 cut(s) 442, 468
HpyCH4III ACNGT 3 cut(s) 278, 535, 854
HpyCH4V TGCA 4 cut(s) 13, 257, 274, 725
HpyF3I CTNAG 5 cut(s) 20, 74, 201, 306, 659
Hsp92II CATG 2 cut(s) 65, 176
KpnI GGTACC 1 cut(s) 409
Kzo9I GATC 1 cut(s) 77
LpnPI CCDG 7 cut(s) 7, 28, 52, 171, 236, 568, 602
Lsp1109I GCAGC 2 cut(s) 241, 737
LweI GCATC 3 cut(s) 38, 292, 635
MaeI CTAG 4 cut(s) 132, 282, 338, 653
MaeIII GTNAC 1 cut(s) 230
MalI GATC 1 cut(s) 79
MboI GATC 1 cut(s) 77
MboII GAAGA 6 cut(s) 218, 467, 470, 659, 766, 812
MfeI CAATTG 2 cut(s) 102, 387
MmeI TCCRAC 1 cut(s) 243
MnlI CCTC 4 cut(s) 278, 589, 778, 828
MseI TTAA 2 cut(s) 237, 417
MslI CAYNNNNRTG 1 cut(s) 149
MspA1I CMGCKG 1 cut(s) 42
MunI CAATTG 2 cut(s) 102, 387
NdeII GATC 1 cut(s) 77
NlaIII CATG 2 cut(s) 65, 176
NlaIV GGNNCC 2 cut(s) 156, 407
PagI TCATGA 1 cut(s) 61
PcsI WCGNNNNNNNCGW 1 cut(s) 226
PfeI GAWTC 2 cut(s) 553, 873
PkrI GCNGC 2 cut(s) 256, 727
PshBI ATTAAT 1 cut(s) 417
PspFI CCCAGC 2 cut(s) 38, 42
PspN4I GGNNCC 2 cut(s) 156, 407
PspPI GGNCC 1 cut(s) 154
PvuII CAGCTG 1 cut(s) 42
RsaI GTAC 2 cut(s) 280, 407
RsaNI GTAC 2 cut(s) 279, 406
RseI CAYNNNNRTG 1 cut(s) 149
SaqAI TTAA 2 cut(s) 237, 417
SatI GCNGC 2 cut(s) 255, 726
Sau3AI GATC 1 cut(s) 77
Sau96I GGNCC 1 cut(s) 154
ScaI AGTACT 1 cut(s) 280
SfaNI GCATC 3 cut(s) 38, 292, 635
SmiMI CAYNNNNRTG 1 cut(s) 149
SsiI CCGC 5 cut(s) 382, 403, 557, 817, 868
SspI AATATT 1 cut(s) 313
SspMI CTAG 4 cut(s) 132, 282, 338, 653
TaaI ACNGT 3 cut(s) 278, 535, 854
TaqI TCGA 2 cut(s) 194, 220
TatI WGTACW 1 cut(s) 278
TfiI GAWTC 2 cut(s) 553, 873
Tru1I TTAA 2 cut(s) 237, 417
Tru9I TTAA 2 cut(s) 237, 417
TscAI CASTG 2 cut(s) 304, 857
TseI GCWGC 2 cut(s) 254, 725
TspDTI ATGAA 6 cut(s) 50, 78, 189, 435, 512, 660
TspRI CASTG 2 cut(s) 304, 857
VspI ATTAAT 1 cut(s) 417
XapI RAATTY 3 cut(s) 422, 790, 840
XbaI TCTAGA 1 cut(s) 337
XspI CTAG 4 cut(s) 132, 282, 338, 653
ZrmI AGTACT 1 cut(s) 280
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.