Rmu_co8232351.1_g000001
ERF Family

mTERF

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8232351.1
OG0001228
Physical Location & Seq
Reverse (-)
1 .. 704
704 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8232351.1_g000001.1.cds

Sequence Viewer

Length: 681 bp
atgacccatttgcatagcctcagaaatgcatctattctcaaatgggtttcttcaaatattgctcaaaaccaccttagatcatcaagaaccccacttcagccaattgggtctttccccaattctcatgccatcaggctttacggtaccaaaacagctcttgaagctgaaagccccgaaaacttggatataacttcgacttctagtggaaaaaatggaggggggatttctagagttattcgaaaagaagcccaggctgcattgttggagtatttgcactgtactaggggcttgcagttcatggatgcagagaatatgagtaaaaactccccgcagtttctcaacaagcttttaagaagtgttgatgctgaaattgataatgaaattgggggcttgatttcccggtatttgaggtaccaccccattaatgaatttgagcctttctttgagagcttgggattaaaaccttcagagtatatcccccgtcttcctcggaatttgatgttcttgaccgatgatggtttgttgcttcacaattatactgttttgtgtagttatggggtttcacgtagcaagataggaaagatttataaagaagcaacagaagtgtttcgatatgattttgaggtgttgctatcgaaacttcaggcttatgaagaactaggtctcagccaatttgcttta
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
mTERF

Protein Analysis

227

Amino Acids

25.67

Weight (kDa)

7.8

Isoelectric Point (pI)

48.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 588
Acc65I GGTACC 2 cut(s) 143, 411
AccB1I GGYRCC 2 cut(s) 143, 411
AciI CCGC 1 cut(s) 329
AcsI RAATTY 2 cut(s) 428, 493
AcuI CTGAAG 3 cut(s) 80, 450, 626
AfaI GTAC 3 cut(s) 145, 280, 413
AgsI TTSAA 2 cut(s) 54, 161
AjnI CCWGG 1 cut(s) 249
AluBI AGCT 4 cut(s) 155, 164, 346, 450
AluI AGCT 4 cut(s) 155, 164, 346, 450
Alw26I GTCTC 1 cut(s) 668
ApeKI GCWGC 1 cut(s) 254
ApoI RAATTY 2 cut(s) 428, 493
AseI ATTAAT 1 cut(s) 423
Asp700I GAANNNNTTC 1 cut(s) 606
Asp718I GGTACC 2 cut(s) 143, 411
AsuC2I CCSGG 1 cut(s) 400
AsuII TTCGAA 1 cut(s) 238
BanI GGYRCC 2 cut(s) 143, 411
BbsI GAAGAC 1 cut(s) 476
BbvI GCAGC 1 cut(s) 241
BccI CCATC 2 cut(s) 137, 509
BciT130I CCWGG 1 cut(s) 251
BcnI CCSGG 1 cut(s) 400
BcoDI GTCTC 1 cut(s) 668
BfaI CTAG 4 cut(s) 201, 228, 282, 659
BisI GCNGC 1 cut(s) 255
BlsI GCNGC 1 cut(s) 256
Bme1390I CCNGG 2 cut(s) 251, 400
BmiI GGNNCC 2 cut(s) 145, 413
BmrFI CCNGG 2 cut(s) 251, 400
BmsI GCATC 3 cut(s) 38, 292, 352
BpiI GAAGAC 1 cut(s) 476
Bpu14I TTCGAA 1 cut(s) 238
BpuMI CCSGG 1 cut(s) 400
BsaAI YACGTR 1 cut(s) 566
BsaI GGTCTC 1 cut(s) 668
BsaJI CCNNGG 2 cut(s) 249, 488
BseBI CCWGG 1 cut(s) 251
BseDI CCNNGG 2 cut(s) 249, 488
BseGI GGATG 1 cut(s) 307
BseMII CTCAG 2 cut(s) 34, 679
BseXI GCAGC 1 cut(s) 241
BshNI GGYRCC 2 cut(s) 143, 411
BsiSI CCGG 1 cut(s) 400
BsmAI GTCTC 1 cut(s) 668
Bso31I GGTCTC 1 cut(s) 668
Bsp119I TTCGAA 1 cut(s) 238
Bsp143I GATC 1 cut(s) 77
BspACI CCGC 1 cut(s) 329
BspCNI CTCAG 2 cut(s) 33, 678
BspLI GGNNCC 2 cut(s) 145, 413
BspT104I TTCGAA 1 cut(s) 238
BspT107I GGYRCC 2 cut(s) 143, 411
BspTNI GGTCTC 1 cut(s) 668
BssECI CCNNGG 2 cut(s) 249, 488
BssMI GATC 1 cut(s) 77
Bst2UI CCWGG 1 cut(s) 251
Bst4CI ACNGT 3 cut(s) 143, 278, 541
BstBAI YACGTR 1 cut(s) 566
BstBI TTCGAA 1 cut(s) 238
BstC8I GCNNGC 1 cut(s) 290
BstDEI CTNAG 3 cut(s) 20, 74, 665
BstF5I GGATG 1 cut(s) 307
BstKTI GATC 1 cut(s) 80
BstMAI GTCTC 1 cut(s) 668
BstMBI GATC 1 cut(s) 77
BstMWI GCNNNNNNNGC 2 cut(s) 161, 254
BstNI CCWGG 1 cut(s) 251
BstSCI CCNGG 2 cut(s) 249, 398
BstV1I GCAGC 1 cut(s) 241
BstV2I GAAGAC 1 cut(s) 476
BtsCI GGATG 1 cut(s) 307
BtsIMutI CAGTG 1 cut(s) 274
Cac8I GCNNGC 1 cut(s) 290
Csp6I GTAC 3 cut(s) 144, 279, 412
CviAII CATG 2 cut(s) 125, 298
CviQI GTAC 3 cut(s) 144, 279, 412
DdeI CTNAG 3 cut(s) 20, 74, 665
DpnI GATC 1 cut(s) 79
DpnII GATC 1 cut(s) 77
Eco31I GGTCTC 1 cut(s) 668
Eco57I CTGAAG 3 cut(s) 80, 450, 626
EcoRII CCWGG 1 cut(s) 249
EcoT22I ATGCAT 1 cut(s) 31
FaeI CATG 2 cut(s) 128, 301
FatI CATG 2 cut(s) 124, 297
FauI CCCGC 1 cut(s) 336
Fnu4HI GCNGC 1 cut(s) 255
FokI GGATG 1 cut(s) 314
Fsp4HI GCNGC 1 cut(s) 255
FspBI CTAG 4 cut(s) 201, 228, 282, 659
GluI GCNGC 1 cut(s) 255
HapII CCGG 1 cut(s) 400
Hin1II CATG 2 cut(s) 128, 301
HindIII AAGCTT 1 cut(s) 344
HpaII CCGG 1 cut(s) 400
Hpy188I TCNGA 3 cut(s) 23, 469, 492
Hpy188III TCNNGA 4 cut(s) 84, 158, 228, 505
HpyAV CCTTC 1 cut(s) 474
HpyCH4III ACNGT 3 cut(s) 143, 278, 541
HpyCH4IV ACGT 1 cut(s) 565
HpyCH4V TGCA 6 cut(s) 13, 29, 257, 274, 292, 305
HpyF10VI GCNNNNNNNGC 2 cut(s) 161, 254
HpyF3I CTNAG 3 cut(s) 20, 74, 665
HpySE526I ACGT 1 cut(s) 565
Hsp92II CATG 2 cut(s) 128, 301
KpnI GGTACC 2 cut(s) 147, 415
Kzo9I GATC 1 cut(s) 77
LpnPI CCDG 5 cut(s) 118, 236, 263, 413, 629
Lsp1109I GCAGC 1 cut(s) 241
LweI GCATC 3 cut(s) 38, 292, 352
MaeI CTAG 4 cut(s) 201, 228, 282, 659
MaeII ACGT 1 cut(s) 565
MalI GATC 1 cut(s) 79
MboI GATC 1 cut(s) 77
MboII GAAGA 3 cut(s) 42, 476, 665
MfeI CAATTG 1 cut(s) 102
MluCI AATT 8 cut(s) 102, 118, 369, 381, 428, 493, 532, 671
MmeI TCCRAC 1 cut(s) 243
MnlI CCTC 5 cut(s) 29, 209, 402, 498, 616
Mph1103I ATGCAT 1 cut(s) 31
MroXI GAANNNNTTC 1 cut(s) 606
MseI TTAA 3 cut(s) 350, 423, 458
MspI CCGG 1 cut(s) 400
MspR9I CCNGG 2 cut(s) 251, 400
MunI CAATTG 1 cut(s) 102
MvaI CCWGG 1 cut(s) 251
MwoI GCNNNNNNNGC 2 cut(s) 161, 254
NciI CCSGG 1 cut(s) 400
NdeII GATC 1 cut(s) 77
NlaIII CATG 2 cut(s) 128, 301
NlaIV GGNNCC 2 cut(s) 145, 413
NsiI ATGCAT 1 cut(s) 31
NspV TTCGAA 1 cut(s) 238
PdmI GAANNNNTTC 1 cut(s) 606
PkrI GCNGC 1 cut(s) 256
Ppu21I YACGTR 1 cut(s) 566
PshBI ATTAAT 1 cut(s) 423
PsiI TTATAA 1 cut(s) 588
Psp6I CCWGG 1 cut(s) 249
PspGI CCWGG 1 cut(s) 249
PspN4I GGNNCC 2 cut(s) 145, 413
RsaI GTAC 3 cut(s) 145, 280, 413
RsaNI GTAC 3 cut(s) 144, 279, 412
SaqAI TTAA 3 cut(s) 350, 423, 458
SatI GCNGC 1 cut(s) 255
Sau3AI GATC 1 cut(s) 77
ScrFI CCNGG 2 cut(s) 251, 400
SfaNI GCATC 3 cut(s) 38, 292, 352
SfuI TTCGAA 1 cut(s) 238
Sse9I AATT 8 cut(s) 102, 118, 369, 381, 428, 493, 532, 671
SsiI CCGC 1 cut(s) 329
SspI AATATT 1 cut(s) 58
SspMI CTAG 4 cut(s) 201, 228, 282, 659
StyD4I CCNGG 2 cut(s) 249, 398
TaaI ACNGT 3 cut(s) 143, 278, 541
TaiI ACGT 1 cut(s) 568
TaqI TCGA 4 cut(s) 194, 238, 610, 635
TaqII GACCGA 1 cut(s) 524
TasI AATT 8 cut(s) 102, 118, 369, 381, 428, 493, 532, 671
TatI WGTACW 1 cut(s) 278
Tru1I TTAA 3 cut(s) 350, 423, 458
Tru9I TTAA 3 cut(s) 350, 423, 458
TscAI CASTG 1 cut(s) 281
TseI GCWGC 1 cut(s) 254
TspDTI ATGAA 4 cut(s) 286, 393, 441, 666
TspRI CASTG 1 cut(s) 281
VspI ATTAAT 1 cut(s) 423
XapI RAATTY 2 cut(s) 428, 493
XbaI TCTAGA 1 cut(s) 227
XmnI GAANNNNTTC 1 cut(s) 606
XspI CTAG 4 cut(s) 201, 228, 282, 659
Zsp2I ATGCAT 1 cut(s) 31
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.