AT5G07950

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0002780
Physical Location & Seq
Reverse (-)
2540284 .. 2542136
1853 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G07950.1

Sequence Viewer

Length: 912 bp
ATGAGCATCTCGCAGTTTCCGCCGCCTGCTTCTCCATCTCCGGCGTCTTCTTCGCGATCGCTGGCTTCTTCATCTCCATCTCCGGGGAGTTTTTCGTCATCGATGAGGCTATGGAGACCAGCTGCTCAGCGGAATCTTAGGAACCAGTGGTCTAACCTGTCGAATTGTCGGCAACAGTGGATCGTCGCTTGTTCTGCGGGAAGATCTCACGCTACTTTGCTAGTCAATTCGTATCTGTCACAAAAGTATATGCCAATGATGGAGCTTGGTGTGTTGAGTGACATGTTTGATATCGACAAGAAAGCTTTGAAGAAGCTGTTTACGCAACAGAGTTCCTATCGAATCAAGCTTTTATCTTCGTACAAGGAAATGGTAGCTGTTGTTGTTGAGATGGTAAATGCAAGCAGATCTCTGAGATGTTACACGAAGCTGAGTACCGGGTCACTTATACAGTTCTCTGGCACTAAGGAAGATTCAAATGATGCTGGAGATTGCGGTGGCATTCCTGTGTTTAATTTTTGGAATGTCTCTGCATTTGAGAAGATGGCTGAGGAGCTTGTGGAGATGTTCAAACGCGAAGTAATGCTAAAGAGATTGCTCATAATGGAACTGATCTCTTTAAGCACTGAAGTTCCTCAACCCATCAACAACAGTTGGTCAGATGAGCTTTACCATGGAGAATTTGATCATCTCACCAAATGTTCTTTATATTCTATGGAAGTAGCTAAGCCAGTTCTCCCCAGAGTGAAAGATTATAATATCGGTAGTTCTTCTATATCACATACCAACCAGCCAACCGCAGAAATTTTGCAGATTTACTTGACAACTTGGCTTGCAGAAGTAAACATCGACACTCATAGGGTGGATGAGATATTAGCTTTGGTTGGGGAAGAAATTAGAGTCACCTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

303

Amino Acids

34.06

Weight (kDa)

6.96

Isoelectric Point (pI)

57.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 756
AccII CGCG 2 cut(s) 55, 576
AciI CCGC 6 cut(s) 20, 23, 130, 197, 495, 798
AclWI GGATC 1 cut(s) 188
AcsI RAATTY 2 cut(s) 680, 804
AcuI CTGAAG 1 cut(s) 648
AcyI GRCGYC 1 cut(s) 44
AfaI GTAC 2 cut(s) 362, 436
AfiI CCNNNNNNNGG 1 cut(s) 83
AflIII ACRYGT 1 cut(s) 282
AgsI TTSAA 3 cut(s) 310, 477, 571
Alw26I GTCTC 2 cut(s) 109, 532
AlwI GGATC 1 cut(s) 188
ApeKI GCWGC 1 cut(s) 122
ApoI RAATTY 2 cut(s) 680, 804
AsiSI GCGATCGC 1 cut(s) 59
AsuC2I CCSGG 2 cut(s) 84, 439
AsuHPI GGTGA 2 cut(s) 685, 895
BbsI GAAGAC 1 cut(s) 39
BbvCI CCTCAGC 1 cut(s) 549
BbvI GCAGC 1 cut(s) 109
BccI CCATC 6 cut(s) 43, 85, 253, 385, 538, 650
BclI TGATCA 1 cut(s) 685
BcnI CCSGG 2 cut(s) 84, 439
BcoDI GTCTC 2 cut(s) 109, 532
BfaI CTAG 1 cut(s) 221
BglII AGATCT 2 cut(s) 203, 407
BisI GCNGC 2 cut(s) 23, 123
BlpI GCTNAGC 2 cut(s) 126, 726
BlsI GCNGC 2 cut(s) 24, 124
Bme1390I CCNGG 2 cut(s) 84, 439
BmiI GGNNCC 1 cut(s) 143
BmrFI CCNGG 2 cut(s) 84, 439
BmsI GCATC 2 cut(s) 15, 472
BpiI GAAGAC 1 cut(s) 39
BpmI CTGGAG 1 cut(s) 507
Bpu10I CCTNAGC 1 cut(s) 549
Bpu1102I GCTNAGC 2 cut(s) 126, 726
BpuMI CCSGG 2 cut(s) 84, 439
Bsa29I ATCGAT 1 cut(s) 101
BsaHI GRCGYC 1 cut(s) 44
BsaI GGTCTC 1 cut(s) 109
BsaJI CCNNGG 2 cut(s) 83, 673
Bsc4I CCNNNNNNNGG 1 cut(s) 83
Bse1I ACTGG 2 cut(s) 145, 731
BseCI ATCGAT 1 cut(s) 101
BseDI CCNNGG 2 cut(s) 83, 673
BseGI GGATG 1 cut(s) 871
BseLI CCNNNNNNNGG 1 cut(s) 83
BseMII CTCAG 4 cut(s) 140, 404, 422, 540
BseNI ACTGG 2 cut(s) 145, 731
BseRI GAGGAG 1 cut(s) 566
BseXI GCAGC 1 cut(s) 109
Bsh1236I CGCG 2 cut(s) 55, 576
Bsh1285I CGRYCG 1 cut(s) 59
BshVI ATCGAT 1 cut(s) 101
BsiEI CGRYCG 1 cut(s) 59
BsiSI CCGG 3 cut(s) 41, 83, 438
BslI CCNNNNNNNGG 1 cut(s) 83
BsmAI GTCTC 2 cut(s) 109, 532
BsmI GAATGC 1 cut(s) 501
Bso31I GGTCTC 1 cut(s) 109
Bsp143I GATC 6 cut(s) 56, 180, 203, 407, 612, 685
Bsp1720I GCTNAGC 2 cut(s) 126, 726
Bsp19I CCATGG 1 cut(s) 673
Bsp68I TCGCGA 1 cut(s) 55
BspACI CCGC 6 cut(s) 20, 23, 130, 197, 495, 798
BspCNI CTCAG 4 cut(s) 139, 405, 423, 541
BspDI ATCGAT 1 cut(s) 101
BspFNI CGCG 2 cut(s) 55, 576
BspLI GGNNCC 1 cut(s) 143
BspPI GGATC 1 cut(s) 188
BspTNI GGTCTC 1 cut(s) 109
BsrI ACTGG 2 cut(s) 145, 731
BssECI CCNNGG 2 cut(s) 83, 673
BssMI GATC 6 cut(s) 56, 180, 203, 407, 612, 685
BssNI GRCGYC 1 cut(s) 44
BssT1I CCWWGG 1 cut(s) 673
Bst4CI ACNGT 3 cut(s) 177, 453, 653
BstACI GRCGYC 1 cut(s) 44
BstC8I GCNNGC 4 cut(s) 27, 63, 403, 834
BstDEI CTNAG 7 cut(s) 126, 137, 413, 431, 465, 549, 726
BstDSI CCRYGG 1 cut(s) 673
BstF5I GGATG 1 cut(s) 871
BstFNI CGCG 2 cut(s) 55, 576
BstKTI GATC 6 cut(s) 59, 183, 206, 410, 615, 688
BstMAI GTCTC 2 cut(s) 109, 532
BstMBI GATC 6 cut(s) 56, 180, 203, 407, 612, 685
BstMCI CGRYCG 1 cut(s) 59
BstMWI GCNNNNNNNGC 3 cut(s) 19, 194, 322
BstNSI RCATGY 1 cut(s) 286
BstSCI CCNGG 2 cut(s) 82, 437
BstUI CGCG 2 cut(s) 55, 576
BstV1I GCAGC 1 cut(s) 109
BstV2I GAAGAC 1 cut(s) 39
BstX2I RGATCY 2 cut(s) 203, 407
BstYI RGATCY 2 cut(s) 203, 407
Bsu15I ATCGAT 1 cut(s) 101
BsuTUI ATCGAT 1 cut(s) 101
BtgI CCRYGG 1 cut(s) 673
BtsCI GGATG 1 cut(s) 871
BtsIMutI CAGTG 3 cut(s) 152, 182, 624
BtuMI TCGCGA 1 cut(s) 55
Cac8I GCNNGC 4 cut(s) 27, 63, 403, 834
ClaI ATCGAT 1 cut(s) 101
CseI GACGC 1 cut(s) 33
Csp6I GTAC 2 cut(s) 361, 435
CviAII CATG 2 cut(s) 283, 674
CviQI GTAC 2 cut(s) 361, 435
DdeI CTNAG 7 cut(s) 126, 137, 413, 431, 465, 549, 726
DpnI GATC 6 cut(s) 58, 182, 205, 409, 614, 687
DpnII GATC 6 cut(s) 56, 180, 203, 407, 612, 685
EciI GGCGGA 1 cut(s) 9
Eco130I CCWWGG 1 cut(s) 673
Eco31I GGTCTC 1 cut(s) 109
Eco32I GATATC 1 cut(s) 292
Eco57I CTGAAG 1 cut(s) 648
EcoRV GATATC 1 cut(s) 292
EcoT14I CCWWGG 1 cut(s) 673
ErhI CCWWGG 1 cut(s) 673
FaeI CATG 2 cut(s) 286, 677
FatI CATG 2 cut(s) 282, 673
FauI CCCGC 1 cut(s) 190
FbaI TGATCA 1 cut(s) 685
Fnu4HI GCNGC 2 cut(s) 23, 123
FokI GGATG 1 cut(s) 878
Fsp4HI GCNGC 2 cut(s) 23, 123
FspBI CTAG 1 cut(s) 221
GluI GCNGC 2 cut(s) 23, 123
GsuI CTGGAG 1 cut(s) 507
HapII CCGG 3 cut(s) 41, 83, 438
HgaI GACGC 1 cut(s) 33
Hin1I GRCGYC 1 cut(s) 44
Hin1II CATG 2 cut(s) 286, 677
HindIII AAGCTT 2 cut(s) 303, 347
HinfI GANTC 4 cut(s) 133, 342, 473, 900
HpaII CCGG 3 cut(s) 41, 83, 438
HphI GGTGA 2 cut(s) 685, 895
Hpy166II GTNNAC 2 cut(s) 321, 844
Hpy188I TCNGA 2 cut(s) 414, 661
Hpy188III TCNNGA 1 cut(s) 54
Hpy8I GTNNAC 2 cut(s) 321, 844
Hpy99I CGWCG 1 cut(s) 188
HpyCH4III ACNGT 3 cut(s) 177, 453, 653
HpyCH4V TGCA 4 cut(s) 401, 533, 811, 836
HpyF10VI GCNNNNNNNGC 3 cut(s) 19, 194, 322
HpyF3I CTNAG 7 cut(s) 126, 137, 413, 431, 465, 549, 726
Hsp92I GRCGYC 1 cut(s) 44
Hsp92II CATG 2 cut(s) 286, 677
Ksp22I TGATCA 1 cut(s) 685
Kzo9I GATC 6 cut(s) 56, 180, 203, 407, 612, 685
LmnI GCTCC 2 cut(s) 262, 553
Lsp1109I GCAGC 1 cut(s) 109
LweI GCATC 2 cut(s) 15, 472
MaeI CTAG 1 cut(s) 221
MaeIII GTNAC 5 cut(s) 237, 278, 419, 441, 901
MalI GATC 6 cut(s) 58, 182, 205, 409, 614, 687
MboI GATC 6 cut(s) 56, 180, 203, 407, 612, 685
MflI RGATCY 2 cut(s) 203, 407
MluCI AATT 6 cut(s) 163, 226, 514, 680, 804, 894
MlyI GAGTC 1 cut(s) 909
MnlI CCTC 3 cut(s) 99, 544, 645
MseI TTAA 2 cut(s) 513, 620
MslI CAYNNNNRTG 1 cut(s) 506
MspA1I CMGCKG 2 cut(s) 122, 130
MspI CCGG 3 cut(s) 41, 83, 438
MspR9I CCNGG 2 cut(s) 84, 439
Mva1269I GAATGC 1 cut(s) 501
MvnI CGCG 2 cut(s) 55, 576
MwoI GCNNNNNNNGC 3 cut(s) 19, 194, 322
NciI CCSGG 2 cut(s) 84, 439
NcoI CCATGG 1 cut(s) 673
NdeII GATC 6 cut(s) 56, 180, 203, 407, 612, 685
NlaIII CATG 2 cut(s) 286, 677
NlaIV GGNNCC 1 cut(s) 143
NmuCI GTSAC 4 cut(s) 237, 278, 441, 901
NruI TCGCGA 1 cut(s) 55
NspI RCATGY 1 cut(s) 286
PciI ACATGT 1 cut(s) 282
PctI GAATGC 1 cut(s) 501
PfeI GAWTC 3 cut(s) 133, 342, 473
PkrI GCNGC 2 cut(s) 24, 124
Ple19I CGATCG 1 cut(s) 59
PleI GAGTC 1 cut(s) 908
PpsI GAGTC 1 cut(s) 908
PscI ACATGT 1 cut(s) 282
PsiI TTATAA 1 cut(s) 756
PspN4I GGNNCC 1 cut(s) 143
PsuI RGATCY 2 cut(s) 203, 407
PvuI CGATCG 1 cut(s) 59
PvuII CAGCTG 1 cut(s) 122
RgaI GCGATCGC 1 cut(s) 59
RruI TCGCGA 1 cut(s) 55
RsaI GTAC 2 cut(s) 362, 436
RsaNI GTAC 2 cut(s) 361, 435
RseI CAYNNNNRTG 1 cut(s) 506
SaqAI TTAA 2 cut(s) 513, 620
SatI GCNGC 2 cut(s) 23, 123
Sau3AI GATC 6 cut(s) 56, 180, 203, 407, 612, 685
SchI GAGTC 1 cut(s) 909
ScrFI CCNGG 2 cut(s) 84, 439
SfaAI GCGATCGC 1 cut(s) 59
SfaNI GCATC 2 cut(s) 15, 472
SgfI GCGATCGC 1 cut(s) 59
SmiMI CAYNNNNRTG 1 cut(s) 506
Sse9I AATT 6 cut(s) 163, 226, 514, 680, 804, 894
SsiI CCGC 6 cut(s) 20, 23, 130, 197, 495, 798
SspMI CTAG 1 cut(s) 221
StyD4I CCNGG 2 cut(s) 82, 437
StyI CCWWGG 1 cut(s) 673
TaaI ACNGT 3 cut(s) 177, 453, 653
TaqI TCGA 5 cut(s) 101, 161, 294, 340, 849
TasI AATT 6 cut(s) 163, 226, 514, 680, 804, 894
TauI GCSGC 1 cut(s) 25
TfiI GAWTC 3 cut(s) 133, 342, 473
Tru1I TTAA 2 cut(s) 513, 620
Tru9I TTAA 2 cut(s) 513, 620
TscAI CASTG 3 cut(s) 152, 182, 631
TseFI GTSAC 4 cut(s) 237, 278, 441, 901
TseI GCWGC 1 cut(s) 122
Tsp45I GTSAC 4 cut(s) 237, 278, 441, 901
TspDTI ATGAA 1 cut(s) 60
TspRI CASTG 3 cut(s) 152, 182, 631
XapI RAATTY 2 cut(s) 680, 804
XceI RCATGY 1 cut(s) 286
XspI CTAG 1 cut(s) 221
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.