Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0002780

Physical Location & Seq

Genomic Coordinates Reverse (-)

20232456 .. 20235881

Gene Structure 3426 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG095300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1023 bp

ATGAGACATATTTTGGGCCCGAACCCCAACCTTATTCCATATGGATCCAACGTCCGCAATGAAAGCCCAGAAGAAAATTATGAAAGAAACAAAGGTCAAATATGTCTGTTTCTTCACAGTCATATTCTTCTCCAATTTACTTTAGCTCGGCCTTCCACAATGGAAGCTCTAAACCCAGCAACCCCTTACACTCCGAAATCGACGAACCCGAATCCCCAGACTCCGAGCCAAAGCCCATCATCATTAGCAGCGTCGTCTGCTCGGCTGTGGAGGCCCGCCGCGCAGCGCAACCTGAGAAACCAGTGGTCCAAGTTAGCTTCTTTGAGACAACAATGGGAGTCTGCTTCTTCTAGCGGAAGAGCACACGCCACTTTGCTCGTAAACTCCTACCTTTCCATCAAGTACATGCCTTCAAGGGAGTTGGGGGTTCTCAGCGACATGCCGGATATACTAAAGAAAGCTTCGCAGAAATTGCTTAAGCAGCAGGAACTTTATCGGAGCAAGCTTTTATCATCATACAAGGACATGGTGTCTGTTGTAACTAATATGGTCAAAACTAGTAGATCCATGAGATGCTTTGTCAAAGGGTTAACCAATAGTCCACTTTTACAATCTTCTGGCGATTCCGAATGTAATAATGACCCCGGAGATGGTGGTGGGATTCTAGTCTTCACATTTTGGTCGATCTCTTGCTTTGAGAAAGTGGCGGAGGAGCTTGTCCATATGCTTATATTGGAACTAAATTTGAAGCGTTTGCTTGTGGTGGACTTACTGTCAGTTAGTTGCAAAGTTCCAACGGCTAACAGTTTGCATTGGTCTGAAGAGCTATATCCAGGAGAATTTGGTGATTTGAGAATATGCAACTTATTATCTGAGGAAACTTGTAAACCAGTCTATCCAAGATTGCATGGTCAGAAATCTGATAAGCCAGCTATTGGACGTAATCAGCAGCCGGATCATGATGTTTTGCAGGTTTATCTAACAACATGGCTCATAGAGGTGAACATTGATACTGACAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

340

Amino Acids

38.22

Weight (kDa)

8.75

Isoelectric Point (pI)

58.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002780)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07950
fragaria_vesca	FvH4_5g14050 FvH4_5g14050 FvH4_5g14050 FvH4_5g14050 FvH4_5g14150
malus_domestica	MD14G1210300.v1.1 MD17G1029400.v1.1
prunus_persica	Prupe.1G213800_v2.0.a1 Prupe.1G213800_v2.0.a1 Prupe.7G041400_v2.0.a1 Prupe.7G041400_v2.0.a1 Prupe.7G041400_v2.0.a1 Prupe.7G041400_v2.0.a1
pyrus_communis	pycom17g02660
rosa_chinensis	RchiOBHm_Chr4g0399581 RchiOBHm_Chr7g0182771
rosa_laevigata	RLG00000005101 RLG00000009261
rosa_multiflora	Rmu_co8503039.1_g000001 Rmu_sc0000014.1_g000030 Rmu_sc0002285.1_g000035 Rmu_sc0024464.1_g000001
rosa_roxburghii	Rroxscaffold_3G00270990 Rroxscaffold_5G00344490
rosa_rugosa	Rorug04G0017400 Rorug06G0450100 Rorug06G0450200 Rorug06G0450300
rosa_samantha	Rh4AG095300 Rh4BG092700 Rh4CG103800 Rh4DG087700 Rh7AG053900 Rh7BG053400 Rh7CG055000 Rh7DG053200
rosa_wichuraiana	Rw4G007840 Rw7G004390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	961
AccB7I	CCANNNNNTGG	1 cut(s)	935
AccII	CGCG	1 cut(s)	281
AciI	CCGC	5 cut(s)	55, 276, 279, 354, 707
AclWI	GGATC	4 cut(s)	39, 52, 558, 963
AcsI	RAATTY	2 cut(s)	742, 839
AcuI	CTGAAG	1 cut(s)	840
AfaI	GTAC	1 cut(s)	404
AfiI	CCNNNNNNNGG	2 cut(s)	650, 935
AflII	CTTAAG	1 cut(s)	476
AgsI	TTSAA	2 cut(s)	414, 748
AhdI	GACNNNNNGTC	2 cut(s)	529, 772
AhlI	ACTAGT	1 cut(s)	557
AjnI	CCWGG	1 cut(s)	832
AluBI	AGCT	8 cut(s)	146, 167, 317, 461, 505, 715, 826, 932
AluI	AGCT	8 cut(s)	146, 167, 317, 461, 505, 715, 826, 932
Alw21I	GWGCWC	1 cut(s)	364
Alw26I	GTCTC	1 cut(s)	319
AlwI	GGATC	4 cut(s)	39, 52, 558, 963
AoxI	GGCC	3 cut(s)	16, 149, 272
ApaI	GGGCCC	1 cut(s)	20
ApeKI	GCWGC	4 cut(s)	248, 283, 481, 949
ApoI	RAATTY	2 cut(s)	742, 839
AspLEI	GCGC	2 cut(s)	283, 288
AspS9I	GGNCC	4 cut(s)	16, 17, 273, 306
AsuC2I	CCSGG	1 cut(s)	645
AsuHPI	GGTGA	2 cut(s)	857, 1012
AvaII	GGWCC	1 cut(s)	306
BaeGI	GKGCMC	1 cut(s)	20
BamHI	GGATCC	1 cut(s)	44
BanII	GRGCYC	1 cut(s)	20
BbsI	GAAGAC	1 cut(s)	661
Bbv12I	GWGCWC	1 cut(s)	364
BbvI	GCAGC	4 cut(s)	260, 295, 493, 961
BccI	CCATC	3 cut(s)	244, 404, 644
BceAI	ACGGC	1 cut(s)	813
BciT130I	CCWGG	1 cut(s)	834
BcnI	CCSGG	1 cut(s)	645
BcoDI	GTCTC	1 cut(s)	319
BcuI	ACTAGT	1 cut(s)	557
BfaI	CTAG	3 cut(s)	351, 558, 665
BfrI	CTTAAG	1 cut(s)	476
BfuAI	ACCTGC	1 cut(s)	961
BisI	GCNGC	5 cut(s)	249, 279, 284, 482, 950
BlsI	GCNGC	5 cut(s)	250, 280, 285, 483, 951
Bme1390I	CCNGG	2 cut(s)	645, 834
Bme18I	GGWCC	1 cut(s)	306
BmeRI	GACNNNNNGTC	2 cut(s)	529, 772
BmgT120I	GGNCC	4 cut(s)	16, 17, 273, 306
BmiI	GGNNCC	2 cut(s)	18, 46
BmrFI	CCNGG	2 cut(s)	645, 834
BmsI	GCATC	1 cut(s)	563
BpiI	GAAGAC	1 cut(s)	661
BpuMI	CCSGG	1 cut(s)	645
BsaJI	CCNNGG	1 cut(s)	643
Bsc4I	CCNNNNNNNGG	2 cut(s)	650, 935
Bse1I	ACTGG	2 cut(s)	301, 890
Bse3DI	GCAATG	1 cut(s)	64
BseBI	CCWGG	1 cut(s)	834
BseDI	CCNNGG	1 cut(s)	643
BseLI	CCNNNNNNNGG	2 cut(s)	650, 935
BseMI	GCAATG	1 cut(s)	64
BseMII	CTCAG	3 cut(s)	284, 445, 864
BseNI	ACTGG	2 cut(s)	301, 890
BseRI	GAGGAG	1 cut(s)	725
BseSI	GKGCMC	1 cut(s)	20
BseXI	GCAGC	4 cut(s)	260, 295, 493, 961
BseYI	CCCAGC	1 cut(s)	175
Bsh1236I	CGCG	1 cut(s)	281
BshFI	GGCC	3 cut(s)	18, 151, 274
BsiHKAI	GWGCWC	1 cut(s)	364
BsiSI	CCGG	3 cut(s)	443, 645, 953
BslI	CCNNNNNNNGG	2 cut(s)	650, 935
BsmAI	GTCTC	1 cut(s)	319
BsnI	GGCC	3 cut(s)	18, 151, 274
Bsp120I	GGGCCC	1 cut(s)	16
Bsp1286I	GDGCHC	2 cut(s)	20, 364
Bsp143I	GATC	4 cut(s)	44, 563, 684, 955
BspACI	CCGC	5 cut(s)	55, 276, 279, 354, 707
BspANI	GGCC	3 cut(s)	18, 151, 274
BspCNI	CTCAG	3 cut(s)	285, 444, 865
BspFNI	CGCG	1 cut(s)	281
BspHI	TCATGA	1 cut(s)	958
BspLI	GGNNCC	2 cut(s)	18, 46
BspMI	ACCTGC	1 cut(s)	961
BspPI	GGATC	4 cut(s)	39, 52, 558, 963
BspQI	GCTCTTC	2 cut(s)	352, 816
BspTI	CTTAAG	1 cut(s)	476
BsrDI	GCAATG	1 cut(s)	64
BsrI	ACTGG	2 cut(s)	301, 890
BssECI	CCNNGG	1 cut(s)	643
BssMI	GATC	4 cut(s)	44, 563, 684, 955
Bst2UI	CCWGG	1 cut(s)	834
Bst4CI	ACNGT	3 cut(s)	119, 774, 806
Bst6I	CTCTTC	2 cut(s)	352, 816
BstAFI	CTTAAG	1 cut(s)	476
BstAPI	GCANNNNNTGC	1 cut(s)	472
BstC8I	GCNNGC	3 cut(s)	276, 503, 930
BstDEI	CTNAG	3 cut(s)	293, 431, 873
BstFNI	CGCG	1 cut(s)	281
BstHHI	GCGC	2 cut(s)	283, 288
BstKTI	GATC	4 cut(s)	47, 566, 687, 958
BstMAI	GTCTC	1 cut(s)	319
BstMBI	GATC	4 cut(s)	44, 563, 684, 955
BstMWI	GCNNNNNNNGC	6 cut(s)	63, 257, 271, 280, 472, 481
BstNI	CCWGG	1 cut(s)	834
BstNSI	RCATGY	2 cut(s)	409, 442
BstSCI	CCNGG	2 cut(s)	643, 832
BstSLI	GKGCMC	1 cut(s)	20
BstUI	CGCG	1 cut(s)	281
BstV1I	GCAGC	4 cut(s)	260, 295, 493, 961
BstV2I	GAAGAC	1 cut(s)	661
BstX2I	RGATCY	2 cut(s)	44, 563
BstYI	RGATCY	2 cut(s)	44, 563
BsuRI	GGCC	3 cut(s)	18, 151, 274
BtsIMutI	CAGTG	1 cut(s)	308
BveI	ACCTGC	1 cut(s)	961
Cac8I	GCNNGC	3 cut(s)	276, 503, 930
CciI	TCATGA	1 cut(s)	958
CfoI	GCGC	2 cut(s)	283, 288
Cfr13I	GGNCC	4 cut(s)	16, 17, 273, 306
CseI	GACGC	1 cut(s)	240
Csp6I	GTAC	1 cut(s)	403
CviAII	CATG	7 cut(s)	406, 439, 526, 568, 908, 959, 987
CviQI	GTAC	1 cut(s)	403
DdeI	CTNAG	3 cut(s)	293, 431, 873
DpnI	GATC	4 cut(s)	46, 565, 686, 957
DpnII	GATC	4 cut(s)	44, 563, 684, 955
DriI	GACNNNNNGTC	2 cut(s)	529, 772
Eam1104I	CTCTTC	2 cut(s)	352, 816
Eam1105I	GACNNNNNGTC	2 cut(s)	529, 772
EarI	CTCTTC	2 cut(s)	352, 816
EciI	GGCGGA	1 cut(s)	722
Eco24I	GRGCYC	1 cut(s)	20
Eco47I	GGWCC	1 cut(s)	306
Eco57I	CTGAAG	1 cut(s)	840
EcoRII	CCWGG	1 cut(s)	832
EcoT38I	GRGCYC	1 cut(s)	20
FaeI	CATG	7 cut(s)	409, 442, 529, 571, 911, 962, 990
FatI	CATG	7 cut(s)	405, 438, 525, 567, 907, 958, 986
FauI	CCCGC	1 cut(s)	283
FauNDI	CATATG	2 cut(s)	40, 723
Fnu4HI	GCNGC	5 cut(s)	249, 279, 284, 482, 950
FriOI	GRGCYC	1 cut(s)	20
Fsp4HI	GCNGC	5 cut(s)	249, 279, 284, 482, 950
FspBI	CTAG	3 cut(s)	351, 558, 665
GlaI	GCGC	2 cut(s)	282, 287
GluI	GCNGC	5 cut(s)	249, 279, 284, 482, 950
GsaI	CCCAGC	1 cut(s)	179
HaeIII	GGCC	3 cut(s)	18, 151, 274
HapII	CCGG	3 cut(s)	443, 645, 953
HgaI	GACGC	1 cut(s)	240
HhaI	GCGC	2 cut(s)	283, 288
Hin1II	CATG	7 cut(s)	409, 442, 529, 571, 911, 962, 990
Hin6I	GCGC	2 cut(s)	281, 286
HinP1I	GCGC	2 cut(s)	281, 286
HincII	GTYRAC	1 cut(s)	591
HindII	GTYRAC	1 cut(s)	591
HindIII	AAGCTT	2 cut(s)	459, 503
HinfI	GANTC	5 cut(s)	211, 220, 338, 623, 661
HpaI	GTTAAC	1 cut(s)	591
HpaII	CCGG	3 cut(s)	443, 645, 953
HphI	GGTGA	2 cut(s)	857, 1012
Hpy166II	GTNNAC	6 cut(s)	382, 591, 602, 766, 887, 1003
Hpy188I	TCNGA	8 cut(s)	195, 225, 498, 628, 820, 874, 915, 922
Hpy188III	TCNNGA	1 cut(s)	959
Hpy8I	GTNNAC	6 cut(s)	382, 591, 602, 766, 887, 1003
Hpy99I	CGWCG	2 cut(s)	205, 256
HpyAV	CCTTC	2 cut(s)	162, 420
HpyCH4III	ACNGT	3 cut(s)	119, 774, 806
HpyCH4IV	ACGT	2 cut(s)	51, 940
HpyCH4V	TGCA	5 cut(s)	786, 811, 861, 907, 970
HpyF10VI	GCNNNNNNNGC	6 cut(s)	63, 257, 271, 280, 472, 481
HpyF3I	CTNAG	3 cut(s)	293, 431, 873
HpySE526I	ACGT	2 cut(s)	51, 940
Hsp92II	CATG	7 cut(s)	409, 442, 529, 571, 911, 962, 990
HspAI	GCGC	2 cut(s)	281, 286
KspAI	GTTAAC	1 cut(s)	591
Kzo9I	GATC	4 cut(s)	44, 563, 684, 955
LguI	GCTCTTC	2 cut(s)	352, 816
LmnI	GCTCC	2 cut(s)	498, 712
Lsp1109I	GCAGC	4 cut(s)	260, 295, 493, 961
LweI	GCATC	1 cut(s)	563
MaeI	CTAG	3 cut(s)	351, 558, 665
MaeII	ACGT	2 cut(s)	51, 940
MaeIII	GTNAC	1 cut(s)	538
MalI	GATC	4 cut(s)	46, 565, 686, 957
MboI	GATC	4 cut(s)	44, 563, 684, 955
MboII	GAAGA	8 cut(s)	83, 104, 119, 339, 369, 606, 661, 833
MflI	RGATCY	2 cut(s)	44, 563
MhlI	GDGCHC	2 cut(s)	20, 364
MluCI	AATT	5 cut(s)	76, 134, 470, 742, 839
MlyI	GAGTC	2 cut(s)	214, 347
MmeI	TCCRAC	2 cut(s)	72, 818
MnlI	CCTC	4 cut(s)	264, 703, 868, 991
MseI	TTAA	2 cut(s)	477, 590
MslI	CAYNNNNRTG	1 cut(s)	998
MspCI	CTTAAG	1 cut(s)	476
MspI	CCGG	3 cut(s)	443, 645, 953
MspR9I	CCNGG	2 cut(s)	645, 834
MteI	GCGCNGCGC	1 cut(s)	284
MvaI	CCWGG	1 cut(s)	834
MvnI	CGCG	1 cut(s)	281
MwoI	GCNNNNNNNGC	6 cut(s)	63, 257, 271, 280, 472, 481
NciI	CCSGG	1 cut(s)	645
NdeI	CATATG	2 cut(s)	40, 723
NdeII	GATC	4 cut(s)	44, 563, 684, 955
NlaIII	CATG	7 cut(s)	409, 442, 529, 571, 911, 962, 990
NlaIV	GGNNCC	2 cut(s)	18, 46
NmeAIII	GCCGAG	2 cut(s)	127, 241
NspI	RCATGY	2 cut(s)	409, 442
PagI	TCATGA	1 cut(s)	958
PciSI	GCTCTTC	2 cut(s)	352, 816
PcsI	WCGNNNNNNNCGW	1 cut(s)	206
PfeI	GAWTC	3 cut(s)	211, 623, 661
PflMI	CCANNNNNTGG	1 cut(s)	935
PfoI	TCCNGGA	1 cut(s)	832
PkrI	GCNGC	5 cut(s)	250, 280, 285, 483, 951
PleI	GAGTC	2 cut(s)	214, 346
PpsI	GAGTC	2 cut(s)	214, 346
Psp6I	CCWGG	1 cut(s)	832
PspFI	CCCAGC	1 cut(s)	175
PspGI	CCWGG	1 cut(s)	832
PspN4I	GGNNCC	2 cut(s)	18, 46
PspOMI	GGGCCC	1 cut(s)	16
PspPI	GGNCC	4 cut(s)	16, 17, 273, 306
PsuI	RGATCY	2 cut(s)	44, 563
RsaI	GTAC	1 cut(s)	404
RsaNI	GTAC	1 cut(s)	403
RseI	CAYNNNNRTG	1 cut(s)	998
SapI	GCTCTTC	2 cut(s)	352, 816
SaqAI	TTAA	2 cut(s)	477, 590
SatI	GCNGC	5 cut(s)	249, 279, 284, 482, 950
Sau3AI	GATC	4 cut(s)	44, 563, 684, 955
Sau96I	GGNCC	4 cut(s)	16, 17, 273, 306
SchI	GAGTC	2 cut(s)	214, 347
ScrFI	CCNGG	2 cut(s)	645, 834
SduI	GDGCHC	2 cut(s)	20, 364
SfaNI	GCATC	1 cut(s)	563
SinI	GGWCC	1 cut(s)	306
SmiMI	CAYNNNNRTG	1 cut(s)	998
SmlI	CTYRAG	1 cut(s)	476
SmoI	CTYRAG	1 cut(s)	476
SpeI	ACTAGT	1 cut(s)	557
Sse9I	AATT	5 cut(s)	76, 134, 470, 742, 839
SsiI	CCGC	5 cut(s)	55, 276, 279, 354, 707
SspMI	CTAG	3 cut(s)	351, 558, 665
StyD4I	CCNGG	2 cut(s)	643, 832
TaaI	ACNGT	3 cut(s)	119, 774, 806
TaiI	ACGT	2 cut(s)	54, 943
TaqI	TCGA	2 cut(s)	200, 683
TasI	AATT	5 cut(s)	76, 134, 470, 742, 839
TatI	WGTACW	1 cut(s)	402
TauI	GCSGC	1 cut(s)	281
TfiI	GAWTC	3 cut(s)	211, 623, 661
Tru1I	TTAA	2 cut(s)	477, 590
Tru9I	TTAA	2 cut(s)	477, 590
TscAI	CASTG	1 cut(s)	308
TseI	GCWGC	4 cut(s)	248, 283, 481, 949
TspDTI	ATGAA	2 cut(s)	75, 96
TspRI	CASTG	1 cut(s)	308
Van91I	CCANNNNNTGG	1 cut(s)	935
Vha464I	CTTAAG	1 cut(s)	476
VpaK11BI	GGWCC	1 cut(s)	306
XapI	RAATTY	2 cut(s)	742, 839
XceI	RCATGY	2 cut(s)	409, 442
XspI	CTAG	3 cut(s)	351, 558, 665

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.