Rh7BG053400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0002780
Physical Location & Seq
Forward (+)
3459722 .. 3462874
3153 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG053400.1

Sequence Viewer

Length: 894 bp
ATGGAAGCTCTAAGCCCAGCAACCCCTCACACTCCGAAATCGACGAACCCGAATCCCCAGACTCCGACACAAAGCCCATCACCATTAGCAGCGTCGTCTGCTCGGCTGTGGAGGCCCACCGCGCAGCGCAACCTGAGAAACCAATGGTCCAAGTTAGCTTCTTTAAGACAACAATGGGAGTCTGCTTCTTCTAGCGGAAGAGCATACGCCACGTCGTTTGTAAACTCCTACCTTTCCATCAAGAACATGCCTTCAAGGGAGTTGGGGGTTCTCAGCGACATGCCGGATATACTAAAGAAAGCTTCACAGAAATTGCTTAAGCAGCTGGAACTTCATCGGAGCAAGCTTTTATCATCATACATGGACATGGTGTCTGTTGTAACTAATATGGTCAAAACTAGTAGATCCATGAGATGCTTTGTCAAAGGGTCGAGCAATAGTCCACTTTTACAATTTTCTGGCTATTCCGAATGTAATAATGACCCTGGAGATGGTGGTGGGATTCCAGTCTTCACATTTTGGTCGATCTCTTGCTTCGAGAAAGTGGCGGAGGAGCTTGTCCGTATGCTTATATTGGAACTAAATTTGAAGCGTTTGCTTGTGGTGGACTTACTGTCAGTTAGTTGCAAAGTTCCAACGGCTAACAGTTTGCATTGGTCTGAAGAGCTTTATCCAGGAGAATTTGGTGATTTGAGTATGTGCAACTTATTATCTGAGGAAACTTGTAAACCAGTCTATCCAAGATTGCATGGTCAGAAATCTGATAAGCCAACTATTCGACGTAATCAGCAGCCAGATCATGATGTTTTGCAGGTATGGGTGTCATTATATGCAATTGTAATTTTAAAAAGTACAAAAAGAATACATCTAGACATTGGAGGAAAACCTTACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

297

Amino Acids

33.24

Weight (kDa)

9.34

Isoelectric Point (pI)

52.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 802
AccII CGCG 1 cut(s) 122
AciI CCGC 3 cut(s) 120, 195, 548
AclWI GGATC 1 cut(s) 399
AcsI RAATTY 2 cut(s) 583, 680
AcuI CTGAAG 1 cut(s) 681
AfaI GTAC 1 cut(s) 853
AfiI CCNNNNNNNGG 1 cut(s) 491
AflII CTTAAG 1 cut(s) 317
AgsI TTSAA 2 cut(s) 255, 589
AhdI GACNNNNNGTC 2 cut(s) 370, 613
AhlI ACTAGT 1 cut(s) 398
AjiI CACGTC 1 cut(s) 213
AjnI CCWGG 2 cut(s) 484, 673
AluBI AGCT 7 cut(s) 8, 158, 302, 325, 346, 556, 667
AluI AGCT 7 cut(s) 8, 158, 302, 325, 346, 556, 667
AlwI GGATC 1 cut(s) 399
AoxI GGCC 1 cut(s) 113
ApeKI GCWGC 4 cut(s) 89, 124, 322, 790
ApoI RAATTY 2 cut(s) 583, 680
AspLEI GCGC 2 cut(s) 124, 129
AspS9I GGNCC 2 cut(s) 114, 147
AsuHPI GGTGA 2 cut(s) 72, 698
AvaII GGWCC 1 cut(s) 147
BbsI GAAGAC 1 cut(s) 502
BbvI GCAGC 4 cut(s) 101, 136, 334, 802
BccI CCATC 3 cut(s) 85, 245, 485
BceAI ACGGC 1 cut(s) 654
BciT130I CCWGG 2 cut(s) 486, 675
BcuI ACTAGT 1 cut(s) 398
BfaI CTAG 3 cut(s) 192, 399, 869
BfrI CTTAAG 1 cut(s) 317
BfuAI ACCTGC 1 cut(s) 802
BisI GCNGC 4 cut(s) 90, 125, 323, 791
BlsI GCNGC 4 cut(s) 91, 126, 324, 792
Bme1390I CCNGG 2 cut(s) 486, 675
Bme18I GGWCC 1 cut(s) 147
BmeRI GACNNNNNGTC 2 cut(s) 370, 613
BmgBI CACGTC 1 cut(s) 213
BmgT120I GGNCC 2 cut(s) 114, 147
BmrFI CCNGG 2 cut(s) 486, 675
BmsI GCATC 1 cut(s) 404
BpiI GAAGAC 1 cut(s) 502
BpmI CTGGAG 1 cut(s) 507
BsaJI CCNNGG 1 cut(s) 484
Bsc4I CCNNNNNNNGG 1 cut(s) 491
Bse1I ACTGG 2 cut(s) 506, 731
BseBI CCWGG 2 cut(s) 486, 675
BseDI CCNNGG 1 cut(s) 484
BseLI CCNNNNNNNGG 1 cut(s) 491
BseMII CTCAG 3 cut(s) 125, 286, 705
BseNI ACTGG 2 cut(s) 506, 731
BseRI GAGGAG 1 cut(s) 566
BseXI GCAGC 4 cut(s) 101, 136, 334, 802
BseYI CCCAGC 1 cut(s) 16
Bsh1236I CGCG 1 cut(s) 122
BshFI GGCC 1 cut(s) 115
BsiSI CCGG 1 cut(s) 284
BslI CCNNNNNNNGG 1 cut(s) 491
BsnI GGCC 1 cut(s) 115
Bsp143I GATC 3 cut(s) 404, 525, 796
BspACI CCGC 3 cut(s) 120, 195, 548
BspANI GGCC 1 cut(s) 115
BspCNI CTCAG 3 cut(s) 126, 285, 706
BspFNI CGCG 1 cut(s) 122
BspHI TCATGA 1 cut(s) 799
BspMI ACCTGC 1 cut(s) 802
BspPI GGATC 1 cut(s) 399
BspQI GCTCTTC 2 cut(s) 193, 657
BspTI CTTAAG 1 cut(s) 317
BsrI ACTGG 2 cut(s) 506, 731
BssECI CCNNGG 1 cut(s) 484
BssMI GATC 3 cut(s) 404, 525, 796
Bst2UI CCWGG 2 cut(s) 486, 675
Bst4CI ACNGT 2 cut(s) 615, 647
Bst6I CTCTTC 2 cut(s) 193, 657
BstAFI CTTAAG 1 cut(s) 317
BstC8I GCNNGC 1 cut(s) 344
BstDEI CTNAG 4 cut(s) 11, 134, 272, 714
BstFNI CGCG 1 cut(s) 122
BstHHI GCGC 2 cut(s) 124, 129
BstKTI GATC 3 cut(s) 407, 528, 799
BstMBI GATC 3 cut(s) 404, 525, 796
BstMWI GCNNNNNNNGC 4 cut(s) 98, 112, 121, 322
BstNI CCWGG 2 cut(s) 486, 675
BstNSI RCATGY 2 cut(s) 250, 283
BstSCI CCNGG 2 cut(s) 484, 673
BstUI CGCG 1 cut(s) 122
BstV1I GCAGC 4 cut(s) 101, 136, 334, 802
BstV2I GAAGAC 1 cut(s) 502
BstX2I RGATCY 1 cut(s) 404
BstYI RGATCY 1 cut(s) 404
BsuRI GGCC 1 cut(s) 115
BtrI CACGTC 1 cut(s) 213
BveI ACCTGC 1 cut(s) 802
Cac8I GCNNGC 1 cut(s) 344
CciI TCATGA 1 cut(s) 799
CfoI GCGC 2 cut(s) 124, 129
Cfr13I GGNCC 2 cut(s) 114, 147
CseI GACGC 1 cut(s) 81
Csp6I GTAC 1 cut(s) 852
CspCI CAANNNNNGTGG 2 cut(s) 199, 234
CviAII CATG 7 cut(s) 247, 280, 361, 367, 409, 749, 800
CviQI GTAC 1 cut(s) 852
DdeI CTNAG 4 cut(s) 11, 134, 272, 714
DpnI GATC 3 cut(s) 406, 527, 798
DpnII GATC 3 cut(s) 404, 525, 796
DraI TTTAAA 1 cut(s) 846
DriI GACNNNNNGTC 2 cut(s) 370, 613
Eam1104I CTCTTC 2 cut(s) 193, 657
Eam1105I GACNNNNNGTC 2 cut(s) 370, 613
EarI CTCTTC 2 cut(s) 193, 657
EciI GGCGGA 1 cut(s) 563
Eco47I GGWCC 1 cut(s) 147
Eco57I CTGAAG 1 cut(s) 681
EcoRII CCWGG 2 cut(s) 484, 673
FaeI CATG 7 cut(s) 250, 283, 364, 370, 412, 752, 803
FatI CATG 7 cut(s) 246, 279, 360, 366, 408, 748, 799
Fnu4HI GCNGC 4 cut(s) 90, 125, 323, 791
Fsp4HI GCNGC 4 cut(s) 90, 125, 323, 791
FspBI CTAG 3 cut(s) 192, 399, 869
GlaI GCGC 2 cut(s) 123, 128
GluI GCNGC 4 cut(s) 90, 125, 323, 791
GsaI CCCAGC 1 cut(s) 20
GsuI CTGGAG 1 cut(s) 507
HaeIII GGCC 1 cut(s) 115
HapII CCGG 1 cut(s) 284
HgaI GACGC 1 cut(s) 81
HhaI GCGC 2 cut(s) 124, 129
Hin1II CATG 7 cut(s) 250, 283, 364, 370, 412, 752, 803
Hin6I GCGC 2 cut(s) 122, 127
HinP1I GCGC 2 cut(s) 122, 127
HindIII AAGCTT 2 cut(s) 300, 344
HinfI GANTC 4 cut(s) 52, 61, 179, 502
HpaII CCGG 1 cut(s) 284
HphI GGTGA 2 cut(s) 72, 698
Hpy166II GTNNAC 4 cut(s) 223, 443, 607, 728
Hpy188I TCNGA 8 cut(s) 36, 66, 339, 469, 661, 715, 756, 763
Hpy188III TCNNGA 4 cut(s) 241, 538, 800, 869
Hpy8I GTNNAC 4 cut(s) 223, 443, 607, 728
Hpy99I CGWCG 4 cut(s) 46, 97, 217, 783
HpyAV CCTTC 1 cut(s) 261
HpyCH4III ACNGT 2 cut(s) 615, 647
HpyCH4IV ACGT 2 cut(s) 212, 781
HpyCH4V TGCA 6 cut(s) 627, 652, 702, 748, 811, 833
HpyF10VI GCNNNNNNNGC 4 cut(s) 98, 112, 121, 322
HpyF3I CTNAG 4 cut(s) 11, 134, 272, 714
HpySE526I ACGT 2 cut(s) 212, 781
Hsp92II CATG 7 cut(s) 250, 283, 364, 370, 412, 752, 803
HspAI GCGC 2 cut(s) 122, 127
Kzo9I GATC 3 cut(s) 404, 525, 796
LguI GCTCTTC 2 cut(s) 193, 657
LmnI GCTCC 2 cut(s) 339, 553
Lsp1109I GCAGC 4 cut(s) 101, 136, 334, 802
LweI GCATC 1 cut(s) 404
MaeI CTAG 3 cut(s) 192, 399, 869
MaeII ACGT 2 cut(s) 212, 781
MaeIII GTNAC 1 cut(s) 379
MalI GATC 3 cut(s) 406, 527, 798
MboI GATC 3 cut(s) 404, 525, 796
MboII GAAGA 4 cut(s) 180, 210, 502, 674
MfeI CAATTG 1 cut(s) 834
MflI RGATCY 1 cut(s) 404
MluCI AATT 6 cut(s) 311, 452, 583, 680, 834, 840
MlyI GAGTC 2 cut(s) 55, 188
MmeI TCCRAC 2 cut(s) 89, 659
MnlI CCTC 5 cut(s) 36, 105, 544, 709, 872
MseI TTAA 3 cut(s) 164, 318, 845
MslI CAYNNNNRTG 1 cut(s) 365
MspA1I CMGCKG 1 cut(s) 325
MspCI CTTAAG 1 cut(s) 317
MspI CCGG 1 cut(s) 284
MspR9I CCNGG 2 cut(s) 486, 675
MteI GCGCNGCGC 1 cut(s) 125
MunI CAATTG 1 cut(s) 834
MvaI CCWGG 2 cut(s) 486, 675
MvnI CGCG 1 cut(s) 122
MwoI GCNNNNNNNGC 4 cut(s) 98, 112, 121, 322
NdeII GATC 3 cut(s) 404, 525, 796
NlaIII CATG 7 cut(s) 250, 283, 364, 370, 412, 752, 803
NmeAIII GCCGAG 1 cut(s) 82
NspI RCATGY 2 cut(s) 250, 283
PagI TCATGA 1 cut(s) 799
PciSI GCTCTTC 2 cut(s) 193, 657
PcsI WCGNNNNNNNCGW 1 cut(s) 47
PfeI GAWTC 2 cut(s) 52, 502
PfoI TCCNGGA 1 cut(s) 673
PkrI GCNGC 4 cut(s) 91, 126, 324, 792
PleI GAGTC 2 cut(s) 55, 187
PpsI GAGTC 2 cut(s) 55, 187
Psp6I CCWGG 2 cut(s) 484, 673
PspFI CCCAGC 1 cut(s) 16
PspGI CCWGG 2 cut(s) 484, 673
PspPI GGNCC 2 cut(s) 114, 147
PsuI RGATCY 1 cut(s) 404
PvuII CAGCTG 1 cut(s) 325
RsaI GTAC 1 cut(s) 853
RsaNI GTAC 1 cut(s) 852
RseI CAYNNNNRTG 1 cut(s) 365
SapI GCTCTTC 2 cut(s) 193, 657
SaqAI TTAA 3 cut(s) 164, 318, 845
SatI GCNGC 4 cut(s) 90, 125, 323, 791
Sau3AI GATC 3 cut(s) 404, 525, 796
Sau96I GGNCC 2 cut(s) 114, 147
SchI GAGTC 2 cut(s) 55, 188
ScrFI CCNGG 2 cut(s) 486, 675
SfaNI GCATC 1 cut(s) 404
SinI GGWCC 1 cut(s) 147
SmiMI CAYNNNNRTG 1 cut(s) 365
SmlI CTYRAG 1 cut(s) 317
SmoI CTYRAG 1 cut(s) 317
SpeI ACTAGT 1 cut(s) 398
Sse9I AATT 6 cut(s) 311, 452, 583, 680, 834, 840
SsiI CCGC 3 cut(s) 120, 195, 548
SspMI CTAG 3 cut(s) 192, 399, 869
StyD4I CCNGG 2 cut(s) 484, 673
TaaI ACNGT 2 cut(s) 615, 647
TaiI ACGT 2 cut(s) 215, 784
TaqI TCGA 5 cut(s) 41, 431, 524, 537, 778
TasI AATT 6 cut(s) 311, 452, 583, 680, 834, 840
TatI WGTACW 1 cut(s) 851
TfiI GAWTC 2 cut(s) 52, 502
Tru1I TTAA 3 cut(s) 164, 318, 845
Tru9I TTAA 3 cut(s) 164, 318, 845
TseI GCWGC 4 cut(s) 89, 124, 322, 790
TspDTI ATGAA 1 cut(s) 323
TspGWI ACGGA 1 cut(s) 551
Vha464I CTTAAG 1 cut(s) 317
VpaK11BI GGWCC 1 cut(s) 147
XapI RAATTY 2 cut(s) 583, 680
XbaI TCTAGA 1 cut(s) 868
XceI RCATGY 2 cut(s) 250, 283
XspI CTAG 3 cut(s) 192, 399, 869
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.