Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0002780

Physical Location & Seq

Genomic Coordinates Forward (+)

3708909 .. 3712147

Gene Structure 3239 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG053900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

ATGGTGTCTGTTGTAACTAATATGGTCAAAACTAGTAGATCCATGAGATGCTTTGTCAAAGGGTCGAGCAATAGTCCACTTTTACAATTTTCTGGCTATTCCGAATGTAATAATGACCCTGGAGATGGTGGTGGGATTCCAGTCTTCACATTTTGGTCGGTCTCTTGCTTTGAGAAAGTGGCGGAGGAGCTTGTCCATATGCTTATATTGGAACTAAATTTGAAGCGTTTGCTTGTCGTGGACTTACTGTCAGTTAGTTGCAAAGTTCCAACGGCAAACAGTTTGCATTGGTCTGAAGAGCTTTATCCAGGAGAATTTGGTGATTTGAGTATGTGCAACTTATTATCTGAGGAAACTTGTAAACCAGTCTATCCAAGATTGAATGGTCAGAAATCTGATAAGCCAACTATTCGACGTAATCATCAGCAGCCGGATCATGATGTTTTGCAGGTTTATCTAACAACATGGCACATAGAGGTGAACATTGATACTCACAGGGTGGATGAAATATTTGCTGAAGTTGGGGAGGAAATACACTGTAGACTTTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

183

Amino Acids

20.7

Weight (kDa)

5.32

Isoelectric Point (pI)

48.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002780)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07950
fragaria_vesca	FvH4_5g14050 FvH4_5g14050 FvH4_5g14050 FvH4_5g14050 FvH4_5g14150
malus_domestica	MD14G1210300.v1.1 MD17G1029400.v1.1
prunus_persica	Prupe.1G213800_v2.0.a1 Prupe.1G213800_v2.0.a1 Prupe.7G041400_v2.0.a1 Prupe.7G041400_v2.0.a1 Prupe.7G041400_v2.0.a1 Prupe.7G041400_v2.0.a1
pyrus_communis	pycom17g02660
rosa_chinensis	RchiOBHm_Chr4g0399581 RchiOBHm_Chr7g0182771
rosa_laevigata	RLG00000005101 RLG00000009261
rosa_multiflora	Rmu_co8503039.1_g000001 Rmu_sc0000014.1_g000030 Rmu_sc0002285.1_g000035 Rmu_sc0024464.1_g000001
rosa_roxburghii	Rroxscaffold_3G00270990 Rroxscaffold_5G00344490
rosa_rugosa	Rorug04G0017400 Rorug06G0450100 Rorug06G0450200 Rorug06G0450300
rosa_samantha	Rh4AG095300 Rh4BG092700 Rh4CG103800 Rh4DG087700 Rh7AG053900 Rh7BG053400 Rh7CG055000 Rh7DG053200
rosa_wichuraiana	Rw4G007840 Rw7G004390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	439
AccI	GTMKAC	1 cut(s)	541
AciI	CCGC	1 cut(s)	182
AclWI	GGATC	2 cut(s)	33, 441
AcsI	RAATTY	2 cut(s)	217, 314
AcuI	CTGAAG	2 cut(s)	315, 537
AdeI	CACNNNGTG	1 cut(s)	499
AfiI	CCNNNNNNNGG	1 cut(s)	125
AgsI	TTSAA	2 cut(s)	223, 382
AhdI	GACNNNNNGTC	1 cut(s)	247
AhlI	ACTAGT	1 cut(s)	32
AjnI	CCWGG	2 cut(s)	118, 307
AluBI	AGCT	2 cut(s)	190, 301
AluI	AGCT	2 cut(s)	190, 301
Alw26I	GTCTC	1 cut(s)	166
AlwI	GGATC	2 cut(s)	33, 441
ApeKI	GCWGC	1 cut(s)	427
ApoI	RAATTY	2 cut(s)	217, 314
AsuHPI	GGTGA	2 cut(s)	332, 490
BbsI	GAAGAC	1 cut(s)	136
BbvI	GCAGC	1 cut(s)	439
BccI	CCATC	1 cut(s)	119
BceAI	ACGGC	1 cut(s)	288
BciT130I	CCWGG	2 cut(s)	120, 309
BcoDI	GTCTC	1 cut(s)	166
BcuI	ACTAGT	1 cut(s)	32
BfaI	CTAG	1 cut(s)	33
BfmI	CTRYAG	1 cut(s)	538
BfuAI	ACCTGC	1 cut(s)	439
BisI	GCNGC	1 cut(s)	428
BlsI	GCNGC	1 cut(s)	429
Bme1390I	CCNGG	2 cut(s)	120, 309
BmeRI	GACNNNNNGTC	1 cut(s)	247
BmrFI	CCNGG	2 cut(s)	120, 309
BmsI	GCATC	1 cut(s)	38
BpiI	GAAGAC	1 cut(s)	136
BpmI	CTGGAG	1 cut(s)	141
BsaI	GGTCTC	1 cut(s)	166
BsaJI	CCNNGG	1 cut(s)	118
Bsc4I	CCNNNNNNNGG	1 cut(s)	125
Bse1I	ACTGG	2 cut(s)	140, 365
BseBI	CCWGG	2 cut(s)	120, 309
BseDI	CCNNGG	1 cut(s)	118
BseGI	GGATG	1 cut(s)	508
BseLI	CCNNNNNNNGG	1 cut(s)	125
BseMII	CTCAG	1 cut(s)	339
BseNI	ACTGG	2 cut(s)	140, 365
BseRI	GAGGAG	1 cut(s)	200
BseXI	GCAGC	1 cut(s)	439
BsiSI	CCGG	1 cut(s)	431
BslI	CCNNNNNNNGG	1 cut(s)	125
BsmAI	GTCTC	1 cut(s)	166
Bso31I	GGTCTC	1 cut(s)	166
Bsp143I	GATC	2 cut(s)	38, 433
BspACI	CCGC	1 cut(s)	182
BspCNI	CTCAG	1 cut(s)	340
BspHI	TCATGA	2 cut(s)	436, 548
BspMI	ACCTGC	1 cut(s)	439
BspPI	GGATC	2 cut(s)	33, 441
BspQI	GCTCTTC	1 cut(s)	291
BspTNI	GGTCTC	1 cut(s)	166
BsrI	ACTGG	2 cut(s)	140, 365
BssECI	CCNNGG	1 cut(s)	118
BssMI	GATC	2 cut(s)	38, 433
Bst2UI	CCWGG	2 cut(s)	120, 309
Bst4CI	ACNGT	3 cut(s)	249, 281, 539
Bst6I	CTCTTC	1 cut(s)	291
BstDEI	CTNAG	1 cut(s)	348
BstF5I	GGATG	1 cut(s)	508
BstKTI	GATC	2 cut(s)	41, 436
BstMAI	GTCTC	1 cut(s)	166
BstMBI	GATC	2 cut(s)	38, 433
BstNI	CCWGG	2 cut(s)	120, 309
BstSCI	CCNGG	2 cut(s)	118, 307
BstSFI	CTRYAG	1 cut(s)	538
BstV1I	GCAGC	1 cut(s)	439
BstV2I	GAAGAC	1 cut(s)	136
BstX2I	RGATCY	1 cut(s)	38
BstYI	RGATCY	1 cut(s)	38
BtsCI	GGATG	1 cut(s)	508
BtsIMutI	CAGTG	1 cut(s)	535
BveI	ACCTGC	1 cut(s)	439
CciI	TCATGA	2 cut(s)	436, 548
CviAII	CATG	4 cut(s)	43, 437, 465, 549
CviJI	RGCY	5 cut(s)	96, 190, 301, 403, 430
CviKI_1	RGCY	5 cut(s)	96, 190, 301, 403, 430
DdeI	CTNAG	1 cut(s)	348
DpnI	GATC	2 cut(s)	40, 435
DpnII	GATC	2 cut(s)	38, 433
DraIII	CACNNNGTG	1 cut(s)	499
DriI	GACNNNNNGTC	1 cut(s)	247
Eam1104I	CTCTTC	1 cut(s)	291
Eam1105I	GACNNNNNGTC	1 cut(s)	247
EarI	CTCTTC	1 cut(s)	291
EciI	GGCGGA	1 cut(s)	197
Eco31I	GGTCTC	1 cut(s)	166
Eco57I	CTGAAG	2 cut(s)	315, 537
EcoRII	CCWGG	2 cut(s)	118, 307
FaeI	CATG	4 cut(s)	46, 440, 468, 552
FatI	CATG	4 cut(s)	42, 436, 464, 548
FauNDI	CATATG	1 cut(s)	198
FblI	GTMKAC	1 cut(s)	541
Fnu4HI	GCNGC	1 cut(s)	428
FokI	GGATG	1 cut(s)	515
Fsp4HI	GCNGC	1 cut(s)	428
FspBI	CTAG	1 cut(s)	33
GluI	GCNGC	1 cut(s)	428
GsuI	CTGGAG	1 cut(s)	141
HapII	CCGG	1 cut(s)	431
Hin1II	CATG	4 cut(s)	46, 440, 468, 552
HinfI	GANTC	1 cut(s)	136
HpaII	CCGG	1 cut(s)	431
HphI	GGTGA	2 cut(s)	332, 490
Hpy166II	GTNNAC	5 cut(s)	77, 241, 362, 481, 542
Hpy188I	TCNGA	5 cut(s)	103, 295, 349, 390, 397
Hpy188III	TCNNGA	2 cut(s)	437, 549
Hpy8I	GTNNAC	5 cut(s)	77, 241, 362, 481, 542
Hpy99I	CGWCG	1 cut(s)	417
HpyCH4III	ACNGT	3 cut(s)	249, 281, 539
HpyCH4IV	ACGT	1 cut(s)	415
HpyCH4V	TGCA	4 cut(s)	261, 286, 336, 448
HpyF3I	CTNAG	1 cut(s)	348
HpySE526I	ACGT	1 cut(s)	415
Hsp92II	CATG	4 cut(s)	46, 440, 468, 552
Kzo9I	GATC	2 cut(s)	38, 433
LguI	GCTCTTC	1 cut(s)	291
LmnI	GCTCC	1 cut(s)	187
Lsp1109I	GCAGC	1 cut(s)	439
LweI	GCATC	1 cut(s)	38
MaeI	CTAG	1 cut(s)	33
MaeII	ACGT	1 cut(s)	415
MaeIII	GTNAC	1 cut(s)	13
MalI	GATC	2 cut(s)	40, 435
MboI	GATC	2 cut(s)	38, 433
MboII	GAAGA	2 cut(s)	136, 308
MflI	RGATCY	1 cut(s)	38
MluCI	AATT	3 cut(s)	86, 217, 314
MmeI	TCCRAC	1 cut(s)	293
MnlI	CCTC	4 cut(s)	178, 343, 469, 520
MslI	CAYNNNNRTG	1 cut(s)	476
MspI	CCGG	1 cut(s)	431
MspR9I	CCNGG	2 cut(s)	120, 309
MvaI	CCWGG	2 cut(s)	120, 309
NdeI	CATATG	1 cut(s)	198
NdeII	GATC	2 cut(s)	38, 433
NlaIII	CATG	4 cut(s)	46, 440, 468, 552
PagI	TCATGA	2 cut(s)	436, 548
PciSI	GCTCTTC	1 cut(s)	291
PfeI	GAWTC	1 cut(s)	136
PfoI	TCCNGGA	1 cut(s)	307
PkrI	GCNGC	1 cut(s)	429
Psp6I	CCWGG	2 cut(s)	118, 307
PspGI	CCWGG	2 cut(s)	118, 307
PsuI	RGATCY	1 cut(s)	38
RseI	CAYNNNNRTG	1 cut(s)	476
SapI	GCTCTTC	1 cut(s)	291
SatI	GCNGC	1 cut(s)	428
Sau3AI	GATC	2 cut(s)	38, 433
ScrFI	CCNGG	2 cut(s)	120, 309
SetI	ASST	5 cut(s)	192, 303, 418, 453, 480
SfaNI	GCATC	1 cut(s)	38
SfcI	CTRYAG	1 cut(s)	538
SmiMI	CAYNNNNRTG	1 cut(s)	476
SpeI	ACTAGT	1 cut(s)	32
Sse9I	AATT	3 cut(s)	86, 217, 314
SsiI	CCGC	1 cut(s)	182
SspI	AATATT	1 cut(s)	510
SspMI	CTAG	1 cut(s)	33
StyD4I	CCNGG	2 cut(s)	118, 307
TaaI	ACNGT	3 cut(s)	249, 281, 539
TaiI	ACGT	1 cut(s)	418
TaqI	TCGA	2 cut(s)	65, 412
TaqII	GACCGA	1 cut(s)	148
TasI	AATT	3 cut(s)	86, 217, 314
TfiI	GAWTC	1 cut(s)	136
TscAI	CASTG	1 cut(s)	542
TseI	GCWGC	1 cut(s)	427
TspDTI	ATGAA	2 cut(s)	519, 537
TspRI	CASTG	1 cut(s)	542
XapI	RAATTY	2 cut(s)	217, 314
XmiI	GTMKAC	1 cut(s)	541
XspI	CTAG	1 cut(s)	33

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.