Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0002780

Physical Location & Seq

Genomic Coordinates Reverse (-)

16863556 .. 16866789

Gene Structure 3234 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G007840.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 951 bp

ATGTCTGTTTCTTCACAGTCATATTCTTCGTCTACAATGGAAGCTCTAAACCCAGCAAGCCCTTACACTCCGAAATCGACGAACCCGAATCCCCAGACTCCGACCCAAAGCCCATCATCATTAGCAGCGTCGTCTGCTCGGCTGTGGAGGCCCACCGCGCAGCGCAACCTGAGAAACCAGTGGTCCAAGTTAGCTTCTTTGAGACAACAATGGGAGTCTGCTTCTTCTAGCGGAAGAGCACACGCCACTTTGCTCGTAAACTCCTACCTTTCCATCAAGTACATGCCTTCAAGGGAGTTGGGGGTTCTCAGCGACATGCCGGATATACTAAAGAAAGCTTCACAGAAATTGCTTAAGCAGCAGGAACTTTATCGGAGCAAGCTTTTATCATCATACAAGGACATGGTGTCTGTTGTAACTAATATGGTGAAAACTAGTAGATCCATGAGATGCTTTGTCAAAGGGTTAACTAATAGTCCACTTTTACAGTCTTCTGGCTATTCTGAATGTAATAATGACCCCGGAGATGGTGGTGGGATTCTAGTCTTCACATTTTGGTCGATCTCTTGCTTTGAGAAAGTGGCGGAGGAGCTTGTCCATATGCTTATATTGGAACTAAATTTGAAGCGTTTGCTTGTGGTGGACTTACTGTCAGTTAGTTGCAAAGTTCCAACGGCTAACAGTTTGCATTGGTCTGAAGAGCTATATCCAGGAGAATTTGGTGATTTGAGTATATGCAACTTATTATCTGAGGAAACTTGTAAACCAGTCTATCCAAGATTGCATGGTCAGAAATCTGATAAGCCAGCTATTGGACGTAATCAGCAGCCGGATCATGATGTTCTGCAGGTTTATCTAACAACATGGCTCATAGAGGTGAACATTGATACTGACAGGGTGGATGAAATATTTGCTGAAGTTGGGGAGGAAATACATTGTAGGCTTTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

316

Amino Acids

35.29

Weight (kDa)

7.0

Isoelectric Point (pI)

55.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002780)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07950
fragaria_vesca	FvH4_5g14050 FvH4_5g14050 FvH4_5g14050 FvH4_5g14050 FvH4_5g14150
malus_domestica	MD14G1210300.v1.1 MD17G1029400.v1.1
prunus_persica	Prupe.1G213800_v2.0.a1 Prupe.1G213800_v2.0.a1 Prupe.7G041400_v2.0.a1 Prupe.7G041400_v2.0.a1 Prupe.7G041400_v2.0.a1 Prupe.7G041400_v2.0.a1
pyrus_communis	pycom17g02660
rosa_chinensis	RchiOBHm_Chr4g0399581 RchiOBHm_Chr7g0182771
rosa_laevigata	RLG00000005101 RLG00000009261
rosa_multiflora	Rmu_co8503039.1_g000001 Rmu_sc0000014.1_g000030 Rmu_sc0002285.1_g000035 Rmu_sc0024464.1_g000001
rosa_roxburghii	Rroxscaffold_3G00270990 Rroxscaffold_5G00344490
rosa_rugosa	Rorug04G0017400 Rorug06G0450100 Rorug06G0450200 Rorug06G0450300
rosa_samantha	Rh4AG095300 Rh4BG092700 Rh4CG103800 Rh4DG087700 Rh7AG053900 Rh7BG053400 Rh7CG055000 Rh7DG053200
rosa_wichuraiana	Rw4G007840 Rw7G004390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	838
AccB7I	CCANNNNNTGG	1 cut(s)	812
AccI	GTMKAC	1 cut(s)	32
AccII	CGCG	1 cut(s)	158
AciI	CCGC	3 cut(s)	156, 231, 584
AclWI	GGATC	2 cut(s)	435, 840
AcsI	RAATTY	2 cut(s)	619, 716
AcuI	CTGAAG	2 cut(s)	717, 936
AfaI	GTAC	1 cut(s)	281
AfiI	CCNNNNNNNGG	2 cut(s)	527, 812
AflII	CTTAAG	1 cut(s)	353
AgsI	TTSAA	2 cut(s)	291, 625
AhdI	GACNNNNNGTC	2 cut(s)	406, 649
AhlI	ACTAGT	1 cut(s)	434
AjnI	CCWGG	1 cut(s)	709
AluBI	AGCT	7 cut(s)	44, 194, 338, 382, 592, 703, 809
AluI	AGCT	7 cut(s)	44, 194, 338, 382, 592, 703, 809
Alw21I	GWGCWC	1 cut(s)	241
Alw26I	GTCTC	1 cut(s)	196
AlwI	GGATC	2 cut(s)	435, 840
AoxI	GGCC	1 cut(s)	149
ApeKI	GCWGC	4 cut(s)	125, 160, 358, 826
ApoI	RAATTY	2 cut(s)	619, 716
AspLEI	GCGC	2 cut(s)	160, 165
AspS9I	GGNCC	2 cut(s)	150, 183
AsuC2I	CCSGG	1 cut(s)	522
AsuHPI	GGTGA	3 cut(s)	439, 734, 889
AvaII	GGWCC	1 cut(s)	183
BbsI	GAAGAC	2 cut(s)	483, 538
Bbv12I	GWGCWC	1 cut(s)	241
BbvI	GCAGC	4 cut(s)	137, 172, 370, 838
BccI	CCATC	3 cut(s)	121, 281, 521
BceAI	ACGGC	1 cut(s)	690
BciT130I	CCWGG	1 cut(s)	711
BcnI	CCSGG	1 cut(s)	522
BcoDI	GTCTC	1 cut(s)	196
BcuI	ACTAGT	1 cut(s)	434
BfaI	CTAG	3 cut(s)	228, 435, 542
BfmI	CTRYAG	1 cut(s)	845
BfrI	CTTAAG	1 cut(s)	353
BfuAI	ACCTGC	1 cut(s)	838
BisI	GCNGC	4 cut(s)	126, 161, 359, 827
BlsI	GCNGC	4 cut(s)	127, 162, 360, 828
Bme1390I	CCNGG	2 cut(s)	522, 711
Bme18I	GGWCC	1 cut(s)	183
BmeRI	GACNNNNNGTC	2 cut(s)	406, 649
BmgT120I	GGNCC	2 cut(s)	150, 183
BmrFI	CCNGG	2 cut(s)	522, 711
BmsI	GCATC	1 cut(s)	440
BpiI	GAAGAC	2 cut(s)	483, 538
BpuMI	CCSGG	1 cut(s)	522
BsaJI	CCNNGG	1 cut(s)	520
Bsc4I	CCNNNNNNNGG	2 cut(s)	527, 812
Bse1I	ACTGG	2 cut(s)	178, 767
BseBI	CCWGG	1 cut(s)	711
BseDI	CCNNGG	1 cut(s)	520
BseGI	GGATG	1 cut(s)	907
BseLI	CCNNNNNNNGG	2 cut(s)	527, 812
BseMII	CTCAG	3 cut(s)	161, 322, 741
BseNI	ACTGG	2 cut(s)	178, 767
BseRI	GAGGAG	1 cut(s)	602
BseXI	GCAGC	4 cut(s)	137, 172, 370, 838
BseYI	CCCAGC	1 cut(s)	52
Bsh1236I	CGCG	1 cut(s)	158
BshFI	GGCC	1 cut(s)	151
BsiHKAI	GWGCWC	1 cut(s)	241
BsiSI	CCGG	3 cut(s)	320, 522, 830
BslI	CCNNNNNNNGG	2 cut(s)	527, 812
BsmAI	GTCTC	1 cut(s)	196
BsnI	GGCC	1 cut(s)	151
Bsp1286I	GDGCHC	1 cut(s)	241
Bsp143I	GATC	3 cut(s)	440, 561, 832
BspACI	CCGC	3 cut(s)	156, 231, 584
BspANI	GGCC	1 cut(s)	151
BspCNI	CTCAG	3 cut(s)	162, 321, 742
BspFNI	CGCG	1 cut(s)	158
BspHI	TCATGA	2 cut(s)	835, 947
BspMAI	CTGCAG	1 cut(s)	849
BspMI	ACCTGC	1 cut(s)	838
BspPI	GGATC	2 cut(s)	435, 840
BspQI	GCTCTTC	2 cut(s)	229, 693
BspTI	CTTAAG	1 cut(s)	353
BsrI	ACTGG	2 cut(s)	178, 767
BssECI	CCNNGG	1 cut(s)	520
BssMI	GATC	3 cut(s)	440, 561, 832
Bst2UI	CCWGG	1 cut(s)	711
Bst4CI	ACNGT	4 cut(s)	18, 489, 651, 683
Bst6I	CTCTTC	2 cut(s)	229, 693
BstAFI	CTTAAG	1 cut(s)	353
BstC8I	GCNNGC	3 cut(s)	58, 380, 807
BstDEI	CTNAG	3 cut(s)	170, 308, 750
BstF5I	GGATG	1 cut(s)	907
BstFNI	CGCG	1 cut(s)	158
BstHHI	GCGC	2 cut(s)	160, 165
BstKTI	GATC	3 cut(s)	443, 564, 835
BstMAI	GTCTC	1 cut(s)	196
BstMBI	GATC	3 cut(s)	440, 561, 832
BstMWI	GCNNNNNNNGC	4 cut(s)	134, 148, 157, 358
BstNI	CCWGG	1 cut(s)	711
BstNSI	RCATGY	2 cut(s)	286, 319
BstSCI	CCNGG	2 cut(s)	520, 709
BstSFI	CTRYAG	1 cut(s)	845
BstUI	CGCG	1 cut(s)	158
BstV1I	GCAGC	4 cut(s)	137, 172, 370, 838
BstV2I	GAAGAC	2 cut(s)	483, 538
BstX2I	RGATCY	1 cut(s)	440
BstYI	RGATCY	1 cut(s)	440
BsuRI	GGCC	1 cut(s)	151
BtsCI	GGATG	1 cut(s)	907
BtsIMutI	CAGTG	1 cut(s)	185
BveI	ACCTGC	1 cut(s)	838
Cac8I	GCNNGC	3 cut(s)	58, 380, 807
CciI	TCATGA	2 cut(s)	835, 947
CfoI	GCGC	2 cut(s)	160, 165
Cfr13I	GGNCC	2 cut(s)	150, 183
CseI	GACGC	1 cut(s)	117
Csp6I	GTAC	1 cut(s)	280
CviAII	CATG	8 cut(s)	283, 316, 403, 445, 785, 836, 864, 948
CviQI	GTAC	1 cut(s)	280
DdeI	CTNAG	3 cut(s)	170, 308, 750
DpnI	GATC	3 cut(s)	442, 563, 834
DpnII	GATC	3 cut(s)	440, 561, 832
DriI	GACNNNNNGTC	2 cut(s)	406, 649
Eam1104I	CTCTTC	2 cut(s)	229, 693
Eam1105I	GACNNNNNGTC	2 cut(s)	406, 649
EarI	CTCTTC	2 cut(s)	229, 693
EciI	GGCGGA	1 cut(s)	599
Eco47I	GGWCC	1 cut(s)	183
Eco57I	CTGAAG	2 cut(s)	717, 936
EcoRII	CCWGG	1 cut(s)	709
FaeI	CATG	8 cut(s)	286, 319, 406, 448, 788, 839, 867, 951
FatI	CATG	8 cut(s)	282, 315, 402, 444, 784, 835, 863, 947
FauNDI	CATATG	1 cut(s)	600
FblI	GTMKAC	1 cut(s)	32
Fnu4HI	GCNGC	4 cut(s)	126, 161, 359, 827
FokI	GGATG	1 cut(s)	914
Fsp4HI	GCNGC	4 cut(s)	126, 161, 359, 827
FspBI	CTAG	3 cut(s)	228, 435, 542
GlaI	GCGC	2 cut(s)	159, 164
GluI	GCNGC	4 cut(s)	126, 161, 359, 827
GsaI	CCCAGC	1 cut(s)	56
HaeIII	GGCC	1 cut(s)	151
HapII	CCGG	3 cut(s)	320, 522, 830
HgaI	GACGC	1 cut(s)	117
HhaI	GCGC	2 cut(s)	160, 165
Hin1II	CATG	8 cut(s)	286, 319, 406, 448, 788, 839, 867, 951
Hin6I	GCGC	2 cut(s)	158, 163
HinP1I	GCGC	2 cut(s)	158, 163
HincII	GTYRAC	1 cut(s)	468
HindII	GTYRAC	1 cut(s)	468
HindIII	AAGCTT	2 cut(s)	336, 380
HinfI	GANTC	4 cut(s)	88, 97, 215, 538
HpaI	GTTAAC	1 cut(s)	468
HpaII	CCGG	3 cut(s)	320, 522, 830
HphI	GGTGA	3 cut(s)	439, 734, 889
Hpy166II	GTNNAC	7 cut(s)	33, 259, 468, 479, 643, 764, 880
Hpy188I	TCNGA	8 cut(s)	72, 102, 375, 505, 697, 751, 792, 799
Hpy188III	TCNNGA	2 cut(s)	836, 948
Hpy8I	GTNNAC	7 cut(s)	33, 259, 468, 479, 643, 764, 880
Hpy99I	CGWCG	2 cut(s)	82, 133
HpyAV	CCTTC	1 cut(s)	297
HpyCH4III	ACNGT	4 cut(s)	18, 489, 651, 683
HpyCH4IV	ACGT	1 cut(s)	817
HpyCH4V	TGCA	5 cut(s)	663, 688, 738, 784, 847
HpyF10VI	GCNNNNNNNGC	4 cut(s)	134, 148, 157, 358
HpyF3I	CTNAG	3 cut(s)	170, 308, 750
HpySE526I	ACGT	1 cut(s)	817
Hsp92II	CATG	8 cut(s)	286, 319, 406, 448, 788, 839, 867, 951
HspAI	GCGC	2 cut(s)	158, 163
KspAI	GTTAAC	1 cut(s)	468
Kzo9I	GATC	3 cut(s)	440, 561, 832
LguI	GCTCTTC	2 cut(s)	229, 693
LmnI	GCTCC	2 cut(s)	375, 589
Lsp1109I	GCAGC	4 cut(s)	137, 172, 370, 838
LweI	GCATC	1 cut(s)	440
MaeI	CTAG	3 cut(s)	228, 435, 542
MaeII	ACGT	1 cut(s)	817
MaeIII	GTNAC	1 cut(s)	415
MalI	GATC	3 cut(s)	442, 563, 834
MboI	GATC	3 cut(s)	440, 561, 832
MboII	GAAGA	7 cut(s)	3, 18, 216, 246, 483, 538, 710
MflI	RGATCY	1 cut(s)	440
MhlI	GDGCHC	1 cut(s)	241
MluCI	AATT	3 cut(s)	347, 619, 716
MlyI	GAGTC	2 cut(s)	91, 224
MmeI	TCCRAC	2 cut(s)	125, 695
MnlI	CCTC	5 cut(s)	141, 580, 745, 868, 919
MseI	TTAA	2 cut(s)	354, 467
MslI	CAYNNNNRTG	1 cut(s)	875
MspCI	CTTAAG	1 cut(s)	353
MspI	CCGG	3 cut(s)	320, 522, 830
MspR9I	CCNGG	2 cut(s)	522, 711
MteI	GCGCNGCGC	1 cut(s)	161
MvaI	CCWGG	1 cut(s)	711
MvnI	CGCG	1 cut(s)	158
MwoI	GCNNNNNNNGC	4 cut(s)	134, 148, 157, 358
NciI	CCSGG	1 cut(s)	522
NdeI	CATATG	1 cut(s)	600
NdeII	GATC	3 cut(s)	440, 561, 832
NlaIII	CATG	8 cut(s)	286, 319, 406, 448, 788, 839, 867, 951
NmeAIII	GCCGAG	1 cut(s)	118
NspI	RCATGY	2 cut(s)	286, 319
PagI	TCATGA	2 cut(s)	835, 947
PciSI	GCTCTTC	2 cut(s)	229, 693
PcsI	WCGNNNNNNNCGW	1 cut(s)	83
PfeI	GAWTC	2 cut(s)	88, 538
PflMI	CCANNNNNTGG	1 cut(s)	812
PfoI	TCCNGGA	1 cut(s)	709
PkrI	GCNGC	4 cut(s)	127, 162, 360, 828
PleI	GAGTC	2 cut(s)	91, 223
PpsI	GAGTC	2 cut(s)	91, 223
Psp6I	CCWGG	1 cut(s)	709
PspFI	CCCAGC	1 cut(s)	52
PspGI	CCWGG	1 cut(s)	709
PspPI	GGNCC	2 cut(s)	150, 183
PstI	CTGCAG	1 cut(s)	849
PsuI	RGATCY	1 cut(s)	440
RsaI	GTAC	1 cut(s)	281
RsaNI	GTAC	1 cut(s)	280
RseI	CAYNNNNRTG	1 cut(s)	875
SapI	GCTCTTC	2 cut(s)	229, 693
SaqAI	TTAA	2 cut(s)	354, 467
SatI	GCNGC	4 cut(s)	126, 161, 359, 827
Sau3AI	GATC	3 cut(s)	440, 561, 832
Sau96I	GGNCC	2 cut(s)	150, 183
SchI	GAGTC	2 cut(s)	91, 224
ScrFI	CCNGG	2 cut(s)	522, 711
SduI	GDGCHC	1 cut(s)	241
SfaNI	GCATC	1 cut(s)	440
SfcI	CTRYAG	1 cut(s)	845
SinI	GGWCC	1 cut(s)	183
SmiMI	CAYNNNNRTG	1 cut(s)	875
SmlI	CTYRAG	1 cut(s)	353
SmoI	CTYRAG	1 cut(s)	353
SpeI	ACTAGT	1 cut(s)	434
Sse9I	AATT	3 cut(s)	347, 619, 716
SsiI	CCGC	3 cut(s)	156, 231, 584
SspI	AATATT	1 cut(s)	909
SspMI	CTAG	3 cut(s)	228, 435, 542
StyD4I	CCNGG	2 cut(s)	520, 709
TaaI	ACNGT	4 cut(s)	18, 489, 651, 683
TaiI	ACGT	1 cut(s)	820
TaqI	TCGA	2 cut(s)	77, 560
TasI	AATT	3 cut(s)	347, 619, 716
TatI	WGTACW	1 cut(s)	279
TfiI	GAWTC	2 cut(s)	88, 538
Tru1I	TTAA	2 cut(s)	354, 467
Tru9I	TTAA	2 cut(s)	354, 467
TscAI	CASTG	1 cut(s)	185
TseI	GCWGC	4 cut(s)	125, 160, 358, 826
TspDTI	ATGAA	2 cut(s)	918, 936
TspRI	CASTG	1 cut(s)	185
Van91I	CCANNNNNTGG	1 cut(s)	812
Vha464I	CTTAAG	1 cut(s)	353
VpaK11BI	GGWCC	1 cut(s)	183
XapI	RAATTY	2 cut(s)	619, 716
XceI	RCATGY	2 cut(s)	286, 319
XmiI	GTMKAC	1 cut(s)	32
XspI	CTAG	3 cut(s)	228, 435, 542

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.