Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0002780

Physical Location & Seq

Genomic Coordinates Reverse (-)

65054058 .. 65057028

Gene Structure 2971 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000005101

Sequence Viewer

CDS Protein Promoter (2k)

Length: 987 bp

ATGTGCGTCTCACGTGCCTTCACACTATCATATTCTTCTTCAACCTCCAATCTACTTGCTCGGCCTTCAACAATGGAAGCTCTAAGCCCAGCAACCCCTTACACTCCAAAATCGACGAACCCGAATCCCCAGACTCCGACACAAAGCCCATCACCATTAGCAGCGTCGTCTGCTCGGCTGTGGAGGCCCACCGCGCAGCGCAACCTGAGAAACCAATGGTCCAAGTTAGCTTCTTTAAGACAACAATGGGAGTCTGCTTCTTGTAGCGGAAGAGCATACGCCATGTCGCTCGTAAACTCGTACCTTTCCATCAAGTACATGCCTTCAAGGGAGTTGGGGGTTCTCAGCGACATGCCGGATATACTAAAGAAAGCTTCACAGAAATTGCTTAAGCAGCAGGAACTTCATCGGAGCAAGCTTTTATCATCATACAAGGACATGGTGTCTGTTGTAACTAATATGGTCAAAACTAGTAGATCCATGAGATGCTTTGTCAAAGCGTCGAGCAATAGTCCACTTTTACAATTTTCTGGCTATTCTGAATGTAATAATGACCCTGGAGATGGTGGTGGGATTCCAGTCTTCACATTTTGGTCGATCTCTTGCTTTGAGAAAGTGGCGGAGGAGCTTGTCCGTATGCTTATATTGGAACTAAATTTGAAGCGTTTGCTTGTGGTGGACTTACTGTCTGTTAGTTGCAAAGTTCCAACGGCTAACAGTTTGCATTGGTCTGAAGAGCTTTATCCAGGAGAATTTGGTGATTTGAGTATGTGCAACTTATTATCTGAGGAAACTTGTAAACCAGTCTATCCAAGATTGCATGGTCAGAAATCTGATAAGCCAACTATTCGACGTAATCAGCAGCCGGATCATGATGTTTTGCAGGTTTATCTAACAACATGGCTCATAGAGGTGAACATTGATACTCACAGGGTTGATGAAATATTTGCTGAAGTAGGGGAGGAAATACATTGTAGACTTTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

329

Amino Acids

36.85

Weight (kDa)

8.66

Isoelectric Point (pI)

55.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002780)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07950
fragaria_vesca	FvH4_5g14050 FvH4_5g14050 FvH4_5g14050 FvH4_5g14050 FvH4_5g14150
malus_domestica	MD14G1210300.v1.1 MD17G1029400.v1.1
prunus_persica	Prupe.1G213800_v2.0.a1 Prupe.1G213800_v2.0.a1 Prupe.7G041400_v2.0.a1 Prupe.7G041400_v2.0.a1 Prupe.7G041400_v2.0.a1 Prupe.7G041400_v2.0.a1
pyrus_communis	pycom17g02660
rosa_chinensis	RchiOBHm_Chr4g0399581 RchiOBHm_Chr7g0182771
rosa_laevigata	RLG00000005101 RLG00000009261
rosa_multiflora	Rmu_co8503039.1_g000001 Rmu_sc0000014.1_g000030 Rmu_sc0002285.1_g000035 Rmu_sc0024464.1_g000001
rosa_roxburghii	Rroxscaffold_3G00270990 Rroxscaffold_5G00344490
rosa_rugosa	Rorug04G0017400 Rorug06G0450100 Rorug06G0450200 Rorug06G0450300
rosa_samantha	Rh4AG095300 Rh4BG092700 Rh4CG103800 Rh4DG087700 Rh7AG053900 Rh7BG053400 Rh7CG055000 Rh7DG053200
rosa_wichuraiana	Rw4G007840 Rw7G004390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	874
AccI	GTMKAC	1 cut(s)	976
AccII	CGCG	1 cut(s)	194
AciI	CCGC	3 cut(s)	192, 267, 620
AclWI	GGATC	2 cut(s)	471, 876
AcsI	RAATTY	2 cut(s)	655, 752
AcuI	CTGAAG	2 cut(s)	753, 972
AcvI	CACGTG	1 cut(s)	14
AfaI	GTAC	2 cut(s)	302, 317
AfiI	CCNNNNNNNGG	1 cut(s)	563
AflII	CTTAAG	1 cut(s)	389
AgsI	TTSAA	4 cut(s)	42, 69, 327, 661
AhdI	GACNNNNNGTC	2 cut(s)	442, 685
AhlI	ACTAGT	1 cut(s)	470
AjnI	CCWGG	2 cut(s)	556, 745
AluBI	AGCT	6 cut(s)	80, 230, 374, 418, 628, 739
AluI	AGCT	6 cut(s)	80, 230, 374, 418, 628, 739
Alw26I	GTCTC	1 cut(s)	13
AlwI	GGATC	2 cut(s)	471, 876
AoxI	GGCC	2 cut(s)	62, 185
ApeKI	GCWGC	4 cut(s)	161, 196, 394, 862
ApoI	RAATTY	2 cut(s)	655, 752
AspLEI	GCGC	2 cut(s)	196, 201
AspS9I	GGNCC	2 cut(s)	186, 219
AsuHPI	GGTGA	3 cut(s)	144, 770, 925
AvaII	GGWCC	1 cut(s)	219
BbrPI	CACGTG	1 cut(s)	14
BbsI	GAAGAC	1 cut(s)	574
BbvI	GCAGC	4 cut(s)	173, 208, 406, 874
BccI	CCATC	3 cut(s)	157, 317, 557
BceAI	ACGGC	1 cut(s)	726
BciT130I	CCWGG	2 cut(s)	558, 747
BcoDI	GTCTC	1 cut(s)	13
BcuI	ACTAGT	1 cut(s)	470
BfaI	CTAG	1 cut(s)	471
BfrI	CTTAAG	1 cut(s)	389
BfuAI	ACCTGC	1 cut(s)	874
BisI	GCNGC	4 cut(s)	162, 197, 395, 863
BlsI	GCNGC	4 cut(s)	163, 198, 396, 864
Bme1390I	CCNGG	2 cut(s)	558, 747
Bme18I	GGWCC	1 cut(s)	219
BmeRI	GACNNNNNGTC	2 cut(s)	442, 685
BmgT120I	GGNCC	2 cut(s)	186, 219
BmrFI	CCNGG	2 cut(s)	558, 747
BmsI	GCATC	1 cut(s)	476
BpiI	GAAGAC	1 cut(s)	574
BpmI	CTGGAG	1 cut(s)	579
BsaAI	YACGTR	1 cut(s)	14
BsaJI	CCNNGG	1 cut(s)	556
Bsc4I	CCNNNNNNNGG	1 cut(s)	563
Bse1I	ACTGG	2 cut(s)	578, 803
BseBI	CCWGG	2 cut(s)	558, 747
BseDI	CCNNGG	1 cut(s)	556
BseLI	CCNNNNNNNGG	1 cut(s)	563
BseMII	CTCAG	3 cut(s)	197, 358, 777
BseNI	ACTGG	2 cut(s)	578, 803
BseRI	GAGGAG	1 cut(s)	638
BseXI	GCAGC	4 cut(s)	173, 208, 406, 874
BseYI	CCCAGC	1 cut(s)	88
Bsh1236I	CGCG	1 cut(s)	194
BshFI	GGCC	2 cut(s)	64, 187
BsiSI	CCGG	2 cut(s)	356, 866
BslI	CCNNNNNNNGG	1 cut(s)	563
BsmAI	GTCTC	1 cut(s)	13
BsmBI	CGTCTC	1 cut(s)	13
BsnI	GGCC	2 cut(s)	64, 187
Bsp143I	GATC	3 cut(s)	476, 597, 868
BspACI	CCGC	3 cut(s)	192, 267, 620
BspANI	GGCC	2 cut(s)	64, 187
BspCNI	CTCAG	3 cut(s)	198, 357, 778
BspFNI	CGCG	1 cut(s)	194
BspHI	TCATGA	2 cut(s)	871, 983
BspMI	ACCTGC	1 cut(s)	874
BspPI	GGATC	2 cut(s)	471, 876
BspQI	GCTCTTC	2 cut(s)	265, 729
BspTI	CTTAAG	1 cut(s)	389
BsrI	ACTGG	2 cut(s)	578, 803
BssECI	CCNNGG	1 cut(s)	556
BssMI	GATC	3 cut(s)	476, 597, 868
Bst2UI	CCWGG	2 cut(s)	558, 747
Bst4CI	ACNGT	2 cut(s)	687, 719
Bst6I	CTCTTC	2 cut(s)	265, 729
BstAFI	CTTAAG	1 cut(s)	389
BstBAI	YACGTR	1 cut(s)	14
BstC8I	GCNNGC	1 cut(s)	416
BstDEI	CTNAG	4 cut(s)	83, 206, 344, 786
BstFNI	CGCG	1 cut(s)	194
BstHHI	GCGC	2 cut(s)	196, 201
BstKTI	GATC	3 cut(s)	479, 600, 871
BstMAI	GTCTC	1 cut(s)	13
BstMBI	GATC	3 cut(s)	476, 597, 868
BstMWI	GCNNNNNNNGC	4 cut(s)	170, 184, 193, 394
BstNI	CCWGG	2 cut(s)	558, 747
BstNSI	RCATGY	2 cut(s)	322, 355
BstSCI	CCNGG	2 cut(s)	556, 745
BstUI	CGCG	1 cut(s)	194
BstV1I	GCAGC	4 cut(s)	173, 208, 406, 874
BstV2I	GAAGAC	1 cut(s)	574
BstX2I	RGATCY	1 cut(s)	476
BstYI	RGATCY	1 cut(s)	476
BsuRI	GGCC	2 cut(s)	64, 187
BveI	ACCTGC	1 cut(s)	874
Cac8I	GCNNGC	1 cut(s)	416
CciI	TCATGA	2 cut(s)	871, 983
CfoI	GCGC	2 cut(s)	196, 201
Cfr13I	GGNCC	2 cut(s)	186, 219
CseI	GACGC	2 cut(s)	153, 489
Csp6I	GTAC	2 cut(s)	301, 316
CviAII	CATG	9 cut(s)	283, 319, 352, 439, 481, 821, 872, 900, 984
CviQI	GTAC	2 cut(s)	301, 316
DdeI	CTNAG	4 cut(s)	83, 206, 344, 786
DpnI	GATC	3 cut(s)	478, 599, 870
DpnII	GATC	3 cut(s)	476, 597, 868
DriI	GACNNNNNGTC	2 cut(s)	442, 685
Eam1104I	CTCTTC	2 cut(s)	265, 729
Eam1105I	GACNNNNNGTC	2 cut(s)	442, 685
EarI	CTCTTC	2 cut(s)	265, 729
EciI	GGCGGA	1 cut(s)	635
Eco47I	GGWCC	1 cut(s)	219
Eco57I	CTGAAG	2 cut(s)	753, 972
Eco72I	CACGTG	1 cut(s)	14
EcoRII	CCWGG	2 cut(s)	556, 745
Esp3I	CGTCTC	1 cut(s)	13
FaeI	CATG	9 cut(s)	286, 322, 355, 442, 484, 824, 875, 903, 987
FatI	CATG	9 cut(s)	282, 318, 351, 438, 480, 820, 871, 899, 983
FblI	GTMKAC	1 cut(s)	976
Fnu4HI	GCNGC	4 cut(s)	162, 197, 395, 863
Fsp4HI	GCNGC	4 cut(s)	162, 197, 395, 863
FspBI	CTAG	1 cut(s)	471
GlaI	GCGC	2 cut(s)	195, 200
GluI	GCNGC	4 cut(s)	162, 197, 395, 863
GsaI	CCCAGC	1 cut(s)	92
GsuI	CTGGAG	1 cut(s)	579
HaeIII	GGCC	2 cut(s)	64, 187
HapII	CCGG	2 cut(s)	356, 866
HgaI	GACGC	2 cut(s)	153, 489
HhaI	GCGC	2 cut(s)	196, 201
Hin1II	CATG	9 cut(s)	286, 322, 355, 442, 484, 824, 875, 903, 987
Hin6I	GCGC	2 cut(s)	194, 199
HinP1I	GCGC	2 cut(s)	194, 199
HindIII	AAGCTT	2 cut(s)	372, 416
HinfI	GANTC	4 cut(s)	124, 133, 251, 574
HpaII	CCGG	2 cut(s)	356, 866
HphI	GGTGA	3 cut(s)	144, 770, 925
Hpy166II	GTNNAC	6 cut(s)	295, 515, 679, 800, 916, 977
Hpy188I	TCNGA	7 cut(s)	138, 411, 541, 733, 787, 828, 835
Hpy188III	TCNNGA	2 cut(s)	872, 984
Hpy8I	GTNNAC	6 cut(s)	295, 515, 679, 800, 916, 977
Hpy99I	CGWCG	4 cut(s)	118, 169, 505, 855
HpyAV	CCTTC	3 cut(s)	28, 75, 333
HpyCH4III	ACNGT	2 cut(s)	687, 719
HpyCH4IV	ACGT	2 cut(s)	13, 853
HpyCH4V	TGCA	5 cut(s)	699, 724, 774, 820, 883
HpyF10VI	GCNNNNNNNGC	4 cut(s)	170, 184, 193, 394
HpyF3I	CTNAG	4 cut(s)	83, 206, 344, 786
HpySE526I	ACGT	2 cut(s)	13, 853
Hsp92II	CATG	9 cut(s)	286, 322, 355, 442, 484, 824, 875, 903, 987
HspAI	GCGC	2 cut(s)	194, 199
Kzo9I	GATC	3 cut(s)	476, 597, 868
LguI	GCTCTTC	2 cut(s)	265, 729
LmnI	GCTCC	2 cut(s)	411, 625
Lsp1109I	GCAGC	4 cut(s)	173, 208, 406, 874
LweI	GCATC	1 cut(s)	476
MaeI	CTAG	1 cut(s)	471
MaeII	ACGT	2 cut(s)	13, 853
MaeIII	GTNAC	1 cut(s)	451
MalI	GATC	3 cut(s)	478, 599, 870
MboI	GATC	3 cut(s)	476, 597, 868
MboII	GAAGA	5 cut(s)	27, 30, 282, 574, 746
MflI	RGATCY	1 cut(s)	476
MluCI	AATT	4 cut(s)	383, 524, 655, 752
MlyI	GAGTC	2 cut(s)	127, 260
MmeI	TCCRAC	2 cut(s)	161, 731
MnlI	CCTC	6 cut(s)	55, 177, 616, 781, 904, 955
MseI	TTAA	2 cut(s)	236, 390
MslI	CAYNNNNRTG	1 cut(s)	911
MspCI	CTTAAG	1 cut(s)	389
MspI	CCGG	2 cut(s)	356, 866
MspR9I	CCNGG	2 cut(s)	558, 747
MteI	GCGCNGCGC	1 cut(s)	197
MvaI	CCWGG	2 cut(s)	558, 747
MvnI	CGCG	1 cut(s)	194
MwoI	GCNNNNNNNGC	4 cut(s)	170, 184, 193, 394
NdeII	GATC	3 cut(s)	476, 597, 868
NlaIII	CATG	9 cut(s)	286, 322, 355, 442, 484, 824, 875, 903, 987
NmeAIII	GCCGAG	2 cut(s)	40, 154
NspI	RCATGY	2 cut(s)	322, 355
PagI	TCATGA	2 cut(s)	871, 983
PciSI	GCTCTTC	2 cut(s)	265, 729
PcsI	WCGNNNNNNNCGW	1 cut(s)	119
PfeI	GAWTC	2 cut(s)	124, 574
PfoI	TCCNGGA	1 cut(s)	745
PkrI	GCNGC	4 cut(s)	163, 198, 396, 864
PleI	GAGTC	2 cut(s)	127, 259
PmaCI	CACGTG	1 cut(s)	14
PmlI	CACGTG	1 cut(s)	14
PpsI	GAGTC	2 cut(s)	127, 259
Ppu21I	YACGTR	1 cut(s)	14
Psp6I	CCWGG	2 cut(s)	556, 745
PspCI	CACGTG	1 cut(s)	14
PspFI	CCCAGC	1 cut(s)	88
PspGI	CCWGG	2 cut(s)	556, 745
PspPI	GGNCC	2 cut(s)	186, 219
PsuI	RGATCY	1 cut(s)	476
RsaI	GTAC	2 cut(s)	302, 317
RsaNI	GTAC	2 cut(s)	301, 316
RseI	CAYNNNNRTG	1 cut(s)	911
SapI	GCTCTTC	2 cut(s)	265, 729
SaqAI	TTAA	2 cut(s)	236, 390
SatI	GCNGC	4 cut(s)	162, 197, 395, 863
Sau3AI	GATC	3 cut(s)	476, 597, 868
Sau96I	GGNCC	2 cut(s)	186, 219
SchI	GAGTC	2 cut(s)	127, 260
ScrFI	CCNGG	2 cut(s)	558, 747
SfaNI	GCATC	1 cut(s)	476
SinI	GGWCC	1 cut(s)	219
SmiMI	CAYNNNNRTG	1 cut(s)	911
SmlI	CTYRAG	1 cut(s)	389
SmoI	CTYRAG	1 cut(s)	389
SpeI	ACTAGT	1 cut(s)	470
Sse9I	AATT	4 cut(s)	383, 524, 655, 752
SsiI	CCGC	3 cut(s)	192, 267, 620
SspI	AATATT	1 cut(s)	945
SspMI	CTAG	1 cut(s)	471
StyD4I	CCNGG	2 cut(s)	556, 745
TaaI	ACNGT	2 cut(s)	687, 719
TaiI	ACGT	2 cut(s)	16, 856
TaqI	TCGA	4 cut(s)	113, 503, 596, 850
TasI	AATT	4 cut(s)	383, 524, 655, 752
TatI	WGTACW	1 cut(s)	315
TfiI	GAWTC	2 cut(s)	124, 574
Tru1I	TTAA	2 cut(s)	236, 390
Tru9I	TTAA	2 cut(s)	236, 390
TseI	GCWGC	4 cut(s)	161, 196, 394, 862
TspDTI	ATGAA	3 cut(s)	395, 954, 972
TspGWI	ACGGA	1 cut(s)	623
Vha464I	CTTAAG	1 cut(s)	389
VpaK11BI	GGWCC	1 cut(s)	219
XapI	RAATTY	2 cut(s)	655, 752
XceI	RCATGY	2 cut(s)	322, 355
XmiI	GTMKAC	1 cut(s)	976
XspI	CTAG	1 cut(s)	471

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.