Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0002780

Physical Location & Seq

Genomic Coordinates Forward (+)

49874091 .. 49876884

Gene Structure 2794 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000009261

Sequence Viewer

CDS Protein Promoter (2k)

Length: 693 bp

ATGGAAGCTCTAAACCCAGCAACCCCTTACACTCCGAAATCGACGAACCCGAATCCCCAGGCTCCGACCCAAAGCCCATCATCATTAGCAGCGTCGTCTGCTCGGCTGTGGAGGCCCACCGCGCAGCGCAACCTGAGACACCAGTGGTCCAAGTTAGCTTCTTTGAGACAACAATGGGAGTCTGCTTCTTCTAGCGGAAGAGCACACGCCACTTCGCTCGTAAACTCCTACTTTTCCATCAAGTACATGCCGTCAAGGGAGTTGGGGGTTCTCAGCGACATGCCGGATATACTAAAGAAAGCTTCACAGAAATTGCTTAAGCAGCAGGAACTTTATCGGAGCAAGCTTTTATCATCATACAAGGACATGCGTTTGCTTGTGGTGGACTTACTGTCAGTTAGTTGCAAAGTTCCAACGGCTAACAGTTTGCATTGGTCTGAAGAGCTTTATCCAGGAGAATTTGGTCATTTGAGTATATGCAACTTATTAACTGAGGAAACTTGCAAACCAGTCTATCCAAGATTGCATGGTCAGAAATCTGATAAGCCGGCTATTGGACGTAATCAGCAGCCGGATCATGATGTTTTGCAGGTTTATCTAACAACATGGCTCATAGAGGTGAACATTGATACTGACAGGGTGGACGAAATATTTGCTGAAGTTGGGGAGGAAATACATTGTAGGCTTTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

231

Amino Acids

25.99

Weight (kDa)

8.3

Isoelectric Point (pI)

49.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002780)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07950
fragaria_vesca	FvH4_5g14050 FvH4_5g14050 FvH4_5g14050 FvH4_5g14050 FvH4_5g14150
malus_domestica	MD14G1210300.v1.1 MD17G1029400.v1.1
prunus_persica	Prupe.1G213800_v2.0.a1 Prupe.1G213800_v2.0.a1 Prupe.7G041400_v2.0.a1 Prupe.7G041400_v2.0.a1 Prupe.7G041400_v2.0.a1 Prupe.7G041400_v2.0.a1
pyrus_communis	pycom17g02660
rosa_chinensis	RchiOBHm_Chr4g0399581 RchiOBHm_Chr7g0182771
rosa_laevigata	RLG00000005101 RLG00000009261
rosa_multiflora	Rmu_co8503039.1_g000001 Rmu_sc0000014.1_g000030 Rmu_sc0002285.1_g000035 Rmu_sc0024464.1_g000001
rosa_roxburghii	Rroxscaffold_3G00270990 Rroxscaffold_5G00344490
rosa_rugosa	Rorug04G0017400 Rorug06G0450100 Rorug06G0450200 Rorug06G0450300
rosa_samantha	Rh4AG095300 Rh4BG092700 Rh4CG103800 Rh4DG087700 Rh7AG053900 Rh7BG053400 Rh7CG055000 Rh7DG053200
rosa_wichuraiana	Rw4G007840 Rw7G004390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	580
AccII	CGCG	1 cut(s)	122
AciI	CCGC	2 cut(s)	120, 195
AclWI	GGATC	1 cut(s)	582
AcsI	RAATTY	1 cut(s)	458
AcuI	CTGAAG	2 cut(s)	459, 678
AfaI	GTAC	1 cut(s)	245
AfiI	CCNNNNNNNGG	1 cut(s)	554
AflII	CTTAAG	1 cut(s)	317
AhdI	GACNNNNNGTC	1 cut(s)	391
AjnI	CCWGG	2 cut(s)	57, 451
AluBI	AGCT	5 cut(s)	8, 158, 302, 346, 445
AluI	AGCT	5 cut(s)	8, 158, 302, 346, 445
Alw21I	GWGCWC	1 cut(s)	205
Alw26I	GTCTC	2 cut(s)	130, 160
AlwI	GGATC	1 cut(s)	582
AoxI	GGCC	1 cut(s)	113
ApeKI	GCWGC	4 cut(s)	89, 124, 322, 568
ApoI	RAATTY	1 cut(s)	458
ArsI	GACNNNNNNTTYG	2 cut(s)	635, 667
AspLEI	GCGC	2 cut(s)	124, 129
AspS9I	GGNCC	2 cut(s)	114, 147
AsuHPI	GGTGA	1 cut(s)	631
AvaII	GGWCC	1 cut(s)	147
Bbv12I	GWGCWC	1 cut(s)	205
BbvI	GCAGC	4 cut(s)	101, 136, 334, 580
BccI	CCATC	2 cut(s)	85, 245
BceAI	ACGGC	2 cut(s)	235, 432
BcgI	CGANNNNNNTGC	2 cut(s)	635, 669
BciT130I	CCWGG	2 cut(s)	59, 453
BcoDI	GTCTC	2 cut(s)	130, 160
BfaI	CTAG	1 cut(s)	192
BfrI	CTTAAG	1 cut(s)	317
BfuAI	ACCTGC	1 cut(s)	580
BisI	GCNGC	4 cut(s)	90, 125, 323, 569
BlsI	GCNGC	4 cut(s)	91, 126, 324, 570
Bme1390I	CCNGG	2 cut(s)	59, 453
Bme18I	GGWCC	1 cut(s)	147
BmeRI	GACNNNNNGTC	1 cut(s)	391
BmgT120I	GGNCC	2 cut(s)	114, 147
BmiI	GGNNCC	1 cut(s)	63
BmrFI	CCNGG	2 cut(s)	59, 453
BsaJI	CCNNGG	1 cut(s)	57
Bsc4I	CCNNNNNNNGG	1 cut(s)	554
Bse118I	RCCGGY	1 cut(s)	547
Bse1I	ACTGG	2 cut(s)	142, 509
BseBI	CCWGG	2 cut(s)	59, 453
BseDI	CCNNGG	1 cut(s)	57
BseLI	CCNNNNNNNGG	1 cut(s)	554
BseMII	CTCAG	3 cut(s)	125, 286, 483
BseNI	ACTGG	2 cut(s)	142, 509
BseXI	GCAGC	4 cut(s)	101, 136, 334, 580
BseYI	CCCAGC	1 cut(s)	16
Bsh1236I	CGCG	1 cut(s)	122
BshFI	GGCC	1 cut(s)	115
BsiHKAI	GWGCWC	1 cut(s)	205
BsiSI	CCGG	3 cut(s)	284, 548, 572
BslI	CCNNNNNNNGG	1 cut(s)	554
BsmAI	GTCTC	2 cut(s)	130, 160
BsnI	GGCC	1 cut(s)	115
Bsp1286I	GDGCHC	1 cut(s)	205
Bsp143I	GATC	1 cut(s)	574
BspACI	CCGC	2 cut(s)	120, 195
BspANI	GGCC	1 cut(s)	115
BspCNI	CTCAG	3 cut(s)	126, 285, 484
BspFNI	CGCG	1 cut(s)	122
BspHI	TCATGA	2 cut(s)	577, 689
BspLI	GGNNCC	1 cut(s)	63
BspMI	ACCTGC	1 cut(s)	580
BspPI	GGATC	1 cut(s)	582
BspQI	GCTCTTC	2 cut(s)	193, 435
BspTI	CTTAAG	1 cut(s)	317
BsrFI	RCCGGY	1 cut(s)	547
BsrI	ACTGG	2 cut(s)	142, 509
BssAI	RCCGGY	1 cut(s)	547
BssECI	CCNNGG	1 cut(s)	57
BssMI	GATC	1 cut(s)	574
Bst2UI	CCWGG	2 cut(s)	59, 453
Bst4CI	ACNGT	2 cut(s)	393, 425
Bst6I	CTCTTC	2 cut(s)	193, 435
BstAFI	CTTAAG	1 cut(s)	317
BstC8I	GCNNGC	2 cut(s)	344, 549
BstDEI	CTNAG	3 cut(s)	134, 272, 492
BstFNI	CGCG	1 cut(s)	122
BstHHI	GCGC	2 cut(s)	124, 129
BstKTI	GATC	1 cut(s)	577
BstMAI	GTCTC	2 cut(s)	130, 160
BstMBI	GATC	1 cut(s)	574
BstMWI	GCNNNNNNNGC	4 cut(s)	98, 112, 121, 322
BstNI	CCWGG	2 cut(s)	59, 453
BstNSI	RCATGY	3 cut(s)	250, 283, 370
BstSCI	CCNGG	2 cut(s)	57, 451
BstUI	CGCG	1 cut(s)	122
BstV1I	GCAGC	4 cut(s)	101, 136, 334, 580
BsuRI	GGCC	1 cut(s)	115
BtsIMutI	CAGTG	1 cut(s)	149
BveI	ACCTGC	1 cut(s)	580
Cac8I	GCNNGC	2 cut(s)	344, 549
CciI	TCATGA	2 cut(s)	577, 689
CfoI	GCGC	2 cut(s)	124, 129
Cfr10I	RCCGGY	1 cut(s)	547
Cfr13I	GGNCC	2 cut(s)	114, 147
CseI	GACGC	1 cut(s)	81
Csp6I	GTAC	1 cut(s)	244
CviAII	CATG	7 cut(s)	247, 280, 367, 527, 578, 606, 690
CviQI	GTAC	1 cut(s)	244
DdeI	CTNAG	3 cut(s)	134, 272, 492
DpnI	GATC	1 cut(s)	576
DpnII	GATC	1 cut(s)	574
DriI	GACNNNNNGTC	1 cut(s)	391
Eam1104I	CTCTTC	2 cut(s)	193, 435
Eam1105I	GACNNNNNGTC	1 cut(s)	391
EarI	CTCTTC	2 cut(s)	193, 435
Eco47I	GGWCC	1 cut(s)	147
Eco57I	CTGAAG	2 cut(s)	459, 678
EcoRII	CCWGG	2 cut(s)	57, 451
FaeI	CATG	7 cut(s)	250, 283, 370, 530, 581, 609, 693
FatI	CATG	7 cut(s)	246, 279, 366, 526, 577, 605, 689
Fnu4HI	GCNGC	4 cut(s)	90, 125, 323, 569
Fsp4HI	GCNGC	4 cut(s)	90, 125, 323, 569
FspBI	CTAG	1 cut(s)	192
GlaI	GCGC	2 cut(s)	123, 128
GluI	GCNGC	4 cut(s)	90, 125, 323, 569
GsaI	CCCAGC	1 cut(s)	20
HaeIII	GGCC	1 cut(s)	115
HapII	CCGG	3 cut(s)	284, 548, 572
HgaI	GACGC	1 cut(s)	81
HhaI	GCGC	2 cut(s)	124, 129
Hin1II	CATG	7 cut(s)	250, 283, 370, 530, 581, 609, 693
Hin6I	GCGC	2 cut(s)	122, 127
HinP1I	GCGC	2 cut(s)	122, 127
HindIII	AAGCTT	2 cut(s)	300, 344
HinfI	GANTC	2 cut(s)	52, 179
HpaII	CCGG	3 cut(s)	284, 548, 572
HphI	GGTGA	1 cut(s)	631
Hpy166II	GTNNAC	4 cut(s)	223, 385, 622, 643
Hpy188I	TCNGA	6 cut(s)	36, 66, 339, 439, 534, 541
Hpy188III	TCNNGA	2 cut(s)	578, 690
Hpy8I	GTNNAC	4 cut(s)	223, 385, 622, 643
Hpy99I	CGWCG	2 cut(s)	46, 97
HpyCH4III	ACNGT	2 cut(s)	393, 425
HpyCH4IV	ACGT	1 cut(s)	559
HpyCH4V	TGCA	6 cut(s)	405, 430, 480, 504, 526, 589
HpyF10VI	GCNNNNNNNGC	4 cut(s)	98, 112, 121, 322
HpyF3I	CTNAG	3 cut(s)	134, 272, 492
HpySE526I	ACGT	1 cut(s)	559
Hsp92II	CATG	7 cut(s)	250, 283, 370, 530, 581, 609, 693
HspAI	GCGC	2 cut(s)	122, 127
KroI	GCCGGC	1 cut(s)	547
KroNI	GCCGGC	1 cut(s)	549
Kzo9I	GATC	1 cut(s)	574
LguI	GCTCTTC	2 cut(s)	193, 435
LmnI	GCTCC	2 cut(s)	67, 339
Lsp1109I	GCAGC	4 cut(s)	101, 136, 334, 580
MaeI	CTAG	1 cut(s)	192
MaeII	ACGT	1 cut(s)	559
MalI	GATC	1 cut(s)	576
MboI	GATC	1 cut(s)	574
MboII	GAAGA	3 cut(s)	180, 210, 452
MhlI	GDGCHC	1 cut(s)	205
MluCI	AATT	2 cut(s)	311, 458
MlyI	GAGTC	1 cut(s)	188
MmeI	TCCRAC	2 cut(s)	89, 437
MnlI	CCTC	4 cut(s)	105, 487, 610, 661
MroNI	GCCGGC	1 cut(s)	547
MseI	TTAA	2 cut(s)	318, 488
MslI	CAYNNNNRTG	1 cut(s)	617
MspCI	CTTAAG	1 cut(s)	317
MspI	CCGG	3 cut(s)	284, 548, 572
MspR9I	CCNGG	2 cut(s)	59, 453
MteI	GCGCNGCGC	1 cut(s)	125
MvaI	CCWGG	2 cut(s)	59, 453
MvnI	CGCG	1 cut(s)	122
MwoI	GCNNNNNNNGC	4 cut(s)	98, 112, 121, 322
NaeI	GCCGGC	1 cut(s)	549
NdeII	GATC	1 cut(s)	574
NgoMIV	GCCGGC	1 cut(s)	547
NlaIII	CATG	7 cut(s)	250, 283, 370, 530, 581, 609, 693
NlaIV	GGNNCC	1 cut(s)	63
NmeAIII	GCCGAG	1 cut(s)	82
NspI	RCATGY	3 cut(s)	250, 283, 370
PagI	TCATGA	2 cut(s)	577, 689
PciSI	GCTCTTC	2 cut(s)	193, 435
PcsI	WCGNNNNNNNCGW	1 cut(s)	47
PdiI	GCCGGC	1 cut(s)	549
PfeI	GAWTC	1 cut(s)	52
PfoI	TCCNGGA	1 cut(s)	451
PkrI	GCNGC	4 cut(s)	91, 126, 324, 570
PleI	GAGTC	1 cut(s)	187
PpsI	GAGTC	1 cut(s)	187
Psp6I	CCWGG	2 cut(s)	57, 451
PspFI	CCCAGC	1 cut(s)	16
PspGI	CCWGG	2 cut(s)	57, 451
PspN4I	GGNNCC	1 cut(s)	63
PspPI	GGNCC	2 cut(s)	114, 147
RsaI	GTAC	1 cut(s)	245
RsaNI	GTAC	1 cut(s)	244
RseI	CAYNNNNRTG	1 cut(s)	617
SapI	GCTCTTC	2 cut(s)	193, 435
SaqAI	TTAA	2 cut(s)	318, 488
SatI	GCNGC	4 cut(s)	90, 125, 323, 569
Sau3AI	GATC	1 cut(s)	574
Sau96I	GGNCC	2 cut(s)	114, 147
SchI	GAGTC	1 cut(s)	188
ScrFI	CCNGG	2 cut(s)	59, 453
SduI	GDGCHC	1 cut(s)	205
SetI	ASST	9 cut(s)	10, 135, 160, 304, 348, 447, 562, 594, 621
SinI	GGWCC	1 cut(s)	147
SmiMI	CAYNNNNRTG	1 cut(s)	617
SmlI	CTYRAG	1 cut(s)	317
SmoI	CTYRAG	1 cut(s)	317
Sse9I	AATT	2 cut(s)	311, 458
SsiI	CCGC	2 cut(s)	120, 195
SspI	AATATT	1 cut(s)	651
SspMI	CTAG	1 cut(s)	192
StyD4I	CCNGG	2 cut(s)	57, 451
TaaI	ACNGT	2 cut(s)	393, 425
TaiI	ACGT	1 cut(s)	562
TaqI	TCGA	1 cut(s)	41
TasI	AATT	2 cut(s)	311, 458
TatI	WGTACW	1 cut(s)	243
TfiI	GAWTC	1 cut(s)	52
Tru1I	TTAA	2 cut(s)	318, 488
Tru9I	TTAA	2 cut(s)	318, 488
TscAI	CASTG	1 cut(s)	149
TseI	GCWGC	4 cut(s)	89, 124, 322, 568
TspDTI	ATGAA	1 cut(s)	678
TspRI	CASTG	1 cut(s)	149
Vha464I	CTTAAG	1 cut(s)	317
VpaK11BI	GGWCC	1 cut(s)	147
XapI	RAATTY	1 cut(s)	458
XceI	RCATGY	3 cut(s)	250, 283, 370
XspI	CTAG	1 cut(s)	192

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.