Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002285.1

Orthogroup ID

OG0002780

Physical Location & Seq

Genomic Coordinates Reverse (-)

147289 .. 149690

Gene Structure 2402 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002285.1_g000035.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 870 bp

atggaagctctaaacccagcaaccccttacactccgaaatcgacgaacccgaatccccagactccgacccaaagcccatcatcattagcagcgtcgtctgctcggctgtggaggcccgccgcgcagcgcaacctgagaaaccagtggtccaagttagcttctttgagacaacaatgggagtctgcttcttctagcggaagagcgcacgccactttgctcgtaaactcctacctttccatcaagtacatgccttcaagggagttgggggttctcagcgacatgccggatatactaaagaaagcttcacagaaattgcttaagcagcaggaactttatcggagcaagcttttatcatcatacaaggacatggtgtctgttgtaactaatatggtcaaaactagtagatccatgagatgctttgtcaaagggttaaccaatagtccacttttacaatcttctggcgattccgaatgtaataatgaccccggagatgagaaagtggcggaggagcttgtccatatgcttatattggaactaaatttgaagcgtttgcttgtggtggacttactgtcagttagttgcaaagttccaacggctaacagtttgcattggtctgaagagctatatccaggagaatttggtgatttgagtatatgcaacttattatctgaggaaacttgtaaaccagtctatccaagattgcatggtcagaaatctgataagccagttattggacgtaatcagcagccggatcatgatgttttgcaggtttatctaacaacatggctcatagaggtgaacattgatactgacagggtggatgaaatatttgctgaagttggggaggaaatacattgtaggatttcatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

289

Amino Acids

32.41

Weight (kDa)

6.61

Isoelectric Point (pI)

51.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002780)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07950
fragaria_vesca	FvH4_5g14050 FvH4_5g14050 FvH4_5g14050 FvH4_5g14050 FvH4_5g14150
malus_domestica	MD14G1210300.v1.1 MD17G1029400.v1.1
prunus_persica	Prupe.1G213800_v2.0.a1 Prupe.1G213800_v2.0.a1 Prupe.7G041400_v2.0.a1 Prupe.7G041400_v2.0.a1 Prupe.7G041400_v2.0.a1 Prupe.7G041400_v2.0.a1
pyrus_communis	pycom17g02660
rosa_chinensis	RchiOBHm_Chr4g0399581 RchiOBHm_Chr7g0182771
rosa_laevigata	RLG00000005101 RLG00000009261
rosa_multiflora	Rmu_co8503039.1_g000001 Rmu_sc0000014.1_g000030 Rmu_sc0002285.1_g000035 Rmu_sc0024464.1_g000001
rosa_roxburghii	Rroxscaffold_3G00270990 Rroxscaffold_5G00344490
rosa_rugosa	Rorug04G0017400 Rorug06G0450100 Rorug06G0450200 Rorug06G0450300
rosa_samantha	Rh4AG095300 Rh4BG092700 Rh4CG103800 Rh4DG087700 Rh7AG053900 Rh7BG053400 Rh7CG055000 Rh7DG053200
rosa_wichuraiana	Rw4G007840 Rw7G004390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	757
AccB7I	CCANNNNNTGG	1 cut(s)	731
AccII	CGCG	1 cut(s)	122
AciI	CCGC	4 cut(s)	117, 120, 195, 503
AclWI	GGATC	2 cut(s)	399, 759
AcsI	RAATTY	2 cut(s)	538, 635
AcuI	CTGAAG	2 cut(s)	636, 855
AfaI	GTAC	1 cut(s)	245
AfiI	CCNNNNNNNGG	1 cut(s)	731
AflII	CTTAAG	1 cut(s)	317
AgsI	TTSAA	2 cut(s)	255, 544
AhdI	GACNNNNNGTC	2 cut(s)	370, 568
AhlI	ACTAGT	1 cut(s)	398
AjnI	CCWGG	1 cut(s)	628
AluBI	AGCT	6 cut(s)	8, 158, 302, 346, 511, 622
AluI	AGCT	6 cut(s)	8, 158, 302, 346, 511, 622
Alw26I	GTCTC	1 cut(s)	160
AlwI	GGATC	2 cut(s)	399, 759
AoxI	GGCC	1 cut(s)	113
ApeKI	GCWGC	4 cut(s)	89, 124, 322, 745
ApoI	RAATTY	2 cut(s)	538, 635
AspLEI	GCGC	3 cut(s)	124, 129, 205
AspS9I	GGNCC	2 cut(s)	114, 147
AsuC2I	CCSGG	1 cut(s)	486
AsuHPI	GGTGA	2 cut(s)	653, 808
AvaII	GGWCC	1 cut(s)	147
BbvI	GCAGC	4 cut(s)	101, 136, 334, 757
BccI	CCATC	2 cut(s)	85, 245
BceAI	ACGGC	1 cut(s)	609
BciT130I	CCWGG	1 cut(s)	630
BcnI	CCSGG	1 cut(s)	486
BcoDI	GTCTC	1 cut(s)	160
BcuI	ACTAGT	1 cut(s)	398
BfaI	CTAG	2 cut(s)	192, 399
BfrI	CTTAAG	1 cut(s)	317
BfuAI	ACCTGC	1 cut(s)	757
BisI	GCNGC	5 cut(s)	90, 120, 125, 323, 746
BlsI	GCNGC	5 cut(s)	91, 121, 126, 324, 747
Bme1390I	CCNGG	2 cut(s)	486, 630
Bme18I	GGWCC	1 cut(s)	147
BmeRI	GACNNNNNGTC	2 cut(s)	370, 568
BmgT120I	GGNCC	2 cut(s)	114, 147
BmrFI	CCNGG	2 cut(s)	486, 630
BmsI	GCATC	1 cut(s)	404
BpuMI	CCSGG	1 cut(s)	486
BsaJI	CCNNGG	1 cut(s)	484
Bsc4I	CCNNNNNNNGG	1 cut(s)	731
Bse1I	ACTGG	3 cut(s)	142, 686, 725
BseBI	CCWGG	1 cut(s)	630
BseDI	CCNNGG	1 cut(s)	484
BseGI	GGATG	1 cut(s)	826
BseLI	CCNNNNNNNGG	1 cut(s)	731
BseMII	CTCAG	3 cut(s)	125, 286, 660
BseNI	ACTGG	3 cut(s)	142, 686, 725
BseRI	GAGGAG	1 cut(s)	521
BseXI	GCAGC	4 cut(s)	101, 136, 334, 757
BseYI	CCCAGC	1 cut(s)	16
Bsh1236I	CGCG	1 cut(s)	122
BshFI	GGCC	1 cut(s)	115
BsiSI	CCGG	3 cut(s)	284, 486, 749
BslI	CCNNNNNNNGG	1 cut(s)	731
BsmAI	GTCTC	1 cut(s)	160
BsnI	GGCC	1 cut(s)	115
Bsp143I	GATC	2 cut(s)	404, 751
BspACI	CCGC	4 cut(s)	117, 120, 195, 503
BspANI	GGCC	1 cut(s)	115
BspCNI	CTCAG	3 cut(s)	126, 285, 661
BspFNI	CGCG	1 cut(s)	122
BspHI	TCATGA	2 cut(s)	754, 866
BspMI	ACCTGC	1 cut(s)	757
BspPI	GGATC	2 cut(s)	399, 759
BspQI	GCTCTTC	2 cut(s)	193, 612
BspTI	CTTAAG	1 cut(s)	317
BsrI	ACTGG	3 cut(s)	142, 686, 725
BssECI	CCNNGG	1 cut(s)	484
BssMI	GATC	2 cut(s)	404, 751
Bst2UI	CCWGG	1 cut(s)	630
Bst4CI	ACNGT	2 cut(s)	570, 602
Bst6I	CTCTTC	2 cut(s)	193, 612
BstAFI	CTTAAG	1 cut(s)	317
BstC8I	GCNNGC	3 cut(s)	117, 207, 344
BstDEI	CTNAG	3 cut(s)	134, 272, 669
BstF5I	GGATG	1 cut(s)	826
BstFNI	CGCG	1 cut(s)	122
BstHHI	GCGC	3 cut(s)	124, 129, 205
BstKTI	GATC	2 cut(s)	407, 754
BstMAI	GTCTC	1 cut(s)	160
BstMBI	GATC	2 cut(s)	404, 751
BstMWI	GCNNNNNNNGC	4 cut(s)	98, 112, 121, 322
BstNI	CCWGG	1 cut(s)	630
BstNSI	RCATGY	2 cut(s)	250, 283
BstSCI	CCNGG	2 cut(s)	484, 628
BstUI	CGCG	1 cut(s)	122
BstV1I	GCAGC	4 cut(s)	101, 136, 334, 757
BstX2I	RGATCY	1 cut(s)	404
BstYI	RGATCY	1 cut(s)	404
BsuRI	GGCC	1 cut(s)	115
BtsCI	GGATG	1 cut(s)	826
BtsIMutI	CAGTG	1 cut(s)	149
BveI	ACCTGC	1 cut(s)	757
Cac8I	GCNNGC	3 cut(s)	117, 207, 344
CciI	TCATGA	2 cut(s)	754, 866
CfoI	GCGC	3 cut(s)	124, 129, 205
Cfr13I	GGNCC	2 cut(s)	114, 147
CseI	GACGC	1 cut(s)	81
Csp6I	GTAC	1 cut(s)	244
CviAII	CATG	8 cut(s)	247, 280, 367, 409, 704, 755, 783, 867
CviQI	GTAC	1 cut(s)	244
DdeI	CTNAG	3 cut(s)	134, 272, 669
DpnI	GATC	2 cut(s)	406, 753
DpnII	GATC	2 cut(s)	404, 751
DriI	GACNNNNNGTC	2 cut(s)	370, 568
Eam1104I	CTCTTC	2 cut(s)	193, 612
Eam1105I	GACNNNNNGTC	2 cut(s)	370, 568
EarI	CTCTTC	2 cut(s)	193, 612
EciI	GGCGGA	1 cut(s)	518
Eco47I	GGWCC	1 cut(s)	147
Eco57I	CTGAAG	2 cut(s)	636, 855
EcoRII	CCWGG	1 cut(s)	628
FaeI	CATG	8 cut(s)	250, 283, 370, 412, 707, 758, 786, 870
FatI	CATG	8 cut(s)	246, 279, 366, 408, 703, 754, 782, 866
FauI	CCCGC	1 cut(s)	124
FauNDI	CATATG	1 cut(s)	519
Fnu4HI	GCNGC	5 cut(s)	90, 120, 125, 323, 746
FokI	GGATG	1 cut(s)	833
Fsp4HI	GCNGC	5 cut(s)	90, 120, 125, 323, 746
FspBI	CTAG	2 cut(s)	192, 399
GlaI	GCGC	3 cut(s)	123, 128, 204
GluI	GCNGC	5 cut(s)	90, 120, 125, 323, 746
GsaI	CCCAGC	1 cut(s)	20
HaeIII	GGCC	1 cut(s)	115
HapII	CCGG	3 cut(s)	284, 486, 749
HgaI	GACGC	1 cut(s)	81
HhaI	GCGC	3 cut(s)	124, 129, 205
Hin1II	CATG	8 cut(s)	250, 283, 370, 412, 707, 758, 786, 870
Hin6I	GCGC	3 cut(s)	122, 127, 203
HinP1I	GCGC	3 cut(s)	122, 127, 203
HincII	GTYRAC	1 cut(s)	432
HindII	GTYRAC	1 cut(s)	432
HindIII	AAGCTT	2 cut(s)	300, 344
HinfI	GANTC	4 cut(s)	52, 61, 179, 464
HpaI	GTTAAC	1 cut(s)	432
HpaII	CCGG	3 cut(s)	284, 486, 749
HphI	GGTGA	2 cut(s)	653, 808
Hpy166II	GTNNAC	6 cut(s)	223, 432, 443, 562, 683, 799
Hpy188I	TCNGA	8 cut(s)	36, 66, 339, 469, 616, 670, 711, 718
Hpy188III	TCNNGA	2 cut(s)	755, 867
Hpy8I	GTNNAC	6 cut(s)	223, 432, 443, 562, 683, 799
Hpy99I	CGWCG	2 cut(s)	46, 97
HpyAV	CCTTC	1 cut(s)	261
HpyCH4III	ACNGT	2 cut(s)	570, 602
HpyCH4IV	ACGT	1 cut(s)	736
HpyCH4V	TGCA	5 cut(s)	582, 607, 657, 703, 766
HpyF10VI	GCNNNNNNNGC	4 cut(s)	98, 112, 121, 322
HpyF3I	CTNAG	3 cut(s)	134, 272, 669
HpySE526I	ACGT	1 cut(s)	736
Hsp92II	CATG	8 cut(s)	250, 283, 370, 412, 707, 758, 786, 870
HspAI	GCGC	3 cut(s)	122, 127, 203
KspAI	GTTAAC	1 cut(s)	432
Kzo9I	GATC	2 cut(s)	404, 751
LguI	GCTCTTC	2 cut(s)	193, 612
LmnI	GCTCC	2 cut(s)	339, 508
Lsp1109I	GCAGC	4 cut(s)	101, 136, 334, 757
LweI	GCATC	1 cut(s)	404
MaeI	CTAG	2 cut(s)	192, 399
MaeII	ACGT	1 cut(s)	736
MaeIII	GTNAC	1 cut(s)	379
MalI	GATC	2 cut(s)	406, 753
MboI	GATC	2 cut(s)	404, 751
MboII	GAAGA	4 cut(s)	180, 210, 447, 629
MflI	RGATCY	1 cut(s)	404
MluCI	AATT	3 cut(s)	311, 538, 635
MlyI	GAGTC	2 cut(s)	55, 188
MmeI	TCCRAC	2 cut(s)	89, 614
MnlI	CCTC	5 cut(s)	105, 499, 664, 787, 838
MseI	TTAA	2 cut(s)	318, 431
MslI	CAYNNNNRTG	1 cut(s)	794
MspCI	CTTAAG	1 cut(s)	317
MspI	CCGG	3 cut(s)	284, 486, 749
MspR9I	CCNGG	2 cut(s)	486, 630
MteI	GCGCNGCGC	1 cut(s)	125
MvaI	CCWGG	1 cut(s)	630
MvnI	CGCG	1 cut(s)	122
MwoI	GCNNNNNNNGC	4 cut(s)	98, 112, 121, 322
NciI	CCSGG	1 cut(s)	486
NdeI	CATATG	1 cut(s)	519
NdeII	GATC	2 cut(s)	404, 751
NlaIII	CATG	8 cut(s)	250, 283, 370, 412, 707, 758, 786, 870
NmeAIII	GCCGAG	1 cut(s)	82
NspI	RCATGY	2 cut(s)	250, 283
PagI	TCATGA	2 cut(s)	754, 866
PciSI	GCTCTTC	2 cut(s)	193, 612
PcsI	WCGNNNNNNNCGW	1 cut(s)	47
PfeI	GAWTC	2 cut(s)	52, 464
PflMI	CCANNNNNTGG	1 cut(s)	731
PfoI	TCCNGGA	1 cut(s)	628
PkrI	GCNGC	5 cut(s)	91, 121, 126, 324, 747
PleI	GAGTC	2 cut(s)	55, 187
PpsI	GAGTC	2 cut(s)	55, 187
Psp6I	CCWGG	1 cut(s)	628
PspFI	CCCAGC	1 cut(s)	16
PspGI	CCWGG	1 cut(s)	628
PspPI	GGNCC	2 cut(s)	114, 147
PsuI	RGATCY	1 cut(s)	404
RsaI	GTAC	1 cut(s)	245
RsaNI	GTAC	1 cut(s)	244
RseI	CAYNNNNRTG	1 cut(s)	794
SapI	GCTCTTC	2 cut(s)	193, 612
SaqAI	TTAA	2 cut(s)	318, 431
SatI	GCNGC	5 cut(s)	90, 120, 125, 323, 746
Sau3AI	GATC	2 cut(s)	404, 751
Sau96I	GGNCC	2 cut(s)	114, 147
SchI	GAGTC	2 cut(s)	55, 188
ScrFI	CCNGG	2 cut(s)	486, 630
SfaNI	GCATC	1 cut(s)	404
SinI	GGWCC	1 cut(s)	147
SmiMI	CAYNNNNRTG	1 cut(s)	794
SmlI	CTYRAG	1 cut(s)	317
SmoI	CTYRAG	1 cut(s)	317
SpeI	ACTAGT	1 cut(s)	398
Sse9I	AATT	3 cut(s)	311, 538, 635
SsiI	CCGC	4 cut(s)	117, 120, 195, 503
SspI	AATATT	1 cut(s)	828
SspMI	CTAG	2 cut(s)	192, 399
StyD4I	CCNGG	2 cut(s)	484, 628
TaaI	ACNGT	2 cut(s)	570, 602
TaiI	ACGT	1 cut(s)	739
TaqI	TCGA	1 cut(s)	41
TasI	AATT	3 cut(s)	311, 538, 635
TatI	WGTACW	1 cut(s)	243
TauI	GCSGC	1 cut(s)	122
TfiI	GAWTC	2 cut(s)	52, 464
Tru1I	TTAA	2 cut(s)	318, 431
Tru9I	TTAA	2 cut(s)	318, 431
TscAI	CASTG	1 cut(s)	149
TseI	GCWGC	4 cut(s)	89, 124, 322, 745
TspDTI	ATGAA	2 cut(s)	837, 855
TspRI	CASTG	1 cut(s)	149
Van91I	CCANNNNNTGG	1 cut(s)	731
Vha464I	CTTAAG	1 cut(s)	317
VpaK11BI	GGWCC	1 cut(s)	147
XapI	RAATTY	2 cut(s)	538, 635
XceI	RCATGY	2 cut(s)	250, 283
XspI	CTAG	2 cut(s)	192, 399

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.