Rh7DG053200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0002780
Physical Location & Seq
Forward (+)
4052899 .. 4056673
3775 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG053200.1

Sequence Viewer

Length: 672 bp
ATGCCTTCAAGGGAGTTGGGGGTTCTCAGCGACATGCCGGATATACTAAAGAAAGCTTCACAGAAATTGCTTAAGCAGCAGGAACTTCATCGGAGCAAGCTTTTATCATCATACAAGGACATGGTGTCTGTTGTAACTAATATGGTCAAAACTAGTAGATCCATGAGATGCTTTGTCAAAGGGTCGAGCAATAGTCCACTTTTACAATTTTCTGGCTATTCCGAATGTAATAATGACCCTGGAGATGGTGGTGGGATTCCAGTCTTCACATTTTGGTCGATCTCTTGCTTTGAGAAAGTGGCGGAGGAGCTTGTCCATATGCTTATATTGGAACTAAATTTGAAGCGTTTGCTTGTCGTGGACTTACTGTCAGTTAGTTGCAAAGTTCCAACGGCAAACAGTTTGCATTGGTCTGAAGAGCTTTATCCAGGAGAATTTGGTGATTTGAGTATGTGCAACTTATTATCTGAGGAAACTTGCAAACCAGTCTATCCAAGATTGAATGGTCAGAAATCTGATAAGCCAACTATTCGACGTAATCATCAGCAGCCGGATCATGATGTTTTGCAGGTTTATCTAACAACATGGCGCATAGAGGTGAACATTGATACTCACAGGGTGGATGAAATATTTGCTGAAGTTGGGGAGGAAATACACTGTAGACTTTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

223

Amino Acids

25.33

Weight (kDa)

5.99

Isoelectric Point (pI)

50.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 559
AccI GTMKAC 1 cut(s) 661
AciI CCGC 1 cut(s) 302
AclWI GGATC 2 cut(s) 153, 561
AcsI RAATTY 2 cut(s) 337, 434
AcuI CTGAAG 2 cut(s) 435, 657
AdeI CACNNNGTG 1 cut(s) 619
AfiI CCNNNNNNNGG 1 cut(s) 245
AflII CTTAAG 1 cut(s) 71
AgsI TTSAA 3 cut(s) 9, 343, 502
AhdI GACNNNNNGTC 2 cut(s) 124, 367
AhlI ACTAGT 1 cut(s) 152
AjnI CCWGG 2 cut(s) 238, 427
AluBI AGCT 4 cut(s) 56, 100, 310, 421
AluI AGCT 4 cut(s) 56, 100, 310, 421
AlwI GGATC 2 cut(s) 153, 561
ApeKI GCWGC 2 cut(s) 76, 547
ApoI RAATTY 2 cut(s) 337, 434
AspLEI GCGC 1 cut(s) 591
AsuHPI GGTGA 2 cut(s) 452, 610
BbsI GAAGAC 1 cut(s) 256
BbvI GCAGC 2 cut(s) 88, 559
BccI CCATC 1 cut(s) 239
BceAI ACGGC 1 cut(s) 408
BciT130I CCWGG 2 cut(s) 240, 429
BcuI ACTAGT 1 cut(s) 152
BfaI CTAG 1 cut(s) 153
BfmI CTRYAG 1 cut(s) 658
BfrI CTTAAG 1 cut(s) 71
BfuAI ACCTGC 1 cut(s) 559
BisI GCNGC 2 cut(s) 77, 548
BlsI GCNGC 2 cut(s) 78, 549
Bme1390I CCNGG 2 cut(s) 240, 429
BmeRI GACNNNNNGTC 2 cut(s) 124, 367
BmrFI CCNGG 2 cut(s) 240, 429
BmsI GCATC 1 cut(s) 158
BpiI GAAGAC 1 cut(s) 256
BpmI CTGGAG 1 cut(s) 261
BsaJI CCNNGG 1 cut(s) 238
Bsc4I CCNNNNNNNGG 1 cut(s) 245
Bse1I ACTGG 2 cut(s) 260, 485
BseBI CCWGG 2 cut(s) 240, 429
BseDI CCNNGG 1 cut(s) 238
BseGI GGATG 1 cut(s) 628
BseLI CCNNNNNNNGG 1 cut(s) 245
BseMII CTCAG 2 cut(s) 40, 459
BseNI ACTGG 2 cut(s) 260, 485
BseRI GAGGAG 1 cut(s) 320
BseXI GCAGC 2 cut(s) 88, 559
BsiSI CCGG 2 cut(s) 38, 551
BslI CCNNNNNNNGG 1 cut(s) 245
Bsp143I GATC 3 cut(s) 158, 279, 553
BspACI CCGC 1 cut(s) 302
BspCNI CTCAG 2 cut(s) 39, 460
BspHI TCATGA 2 cut(s) 556, 668
BspMI ACCTGC 1 cut(s) 559
BspPI GGATC 2 cut(s) 153, 561
BspQI GCTCTTC 1 cut(s) 411
BspTI CTTAAG 1 cut(s) 71
BsrI ACTGG 2 cut(s) 260, 485
BssECI CCNNGG 1 cut(s) 238
BssMI GATC 3 cut(s) 158, 279, 553
Bst2UI CCWGG 2 cut(s) 240, 429
Bst4CI ACNGT 3 cut(s) 369, 401, 659
Bst6I CTCTTC 1 cut(s) 411
BstAFI CTTAAG 1 cut(s) 71
BstC8I GCNNGC 1 cut(s) 98
BstDEI CTNAG 2 cut(s) 26, 468
BstF5I GGATG 1 cut(s) 628
BstHHI GCGC 1 cut(s) 591
BstKTI GATC 3 cut(s) 161, 282, 556
BstMBI GATC 3 cut(s) 158, 279, 553
BstMWI GCNNNNNNNGC 1 cut(s) 76
BstNI CCWGG 2 cut(s) 240, 429
BstNSI RCATGY 1 cut(s) 37
BstSCI CCNGG 2 cut(s) 238, 427
BstSFI CTRYAG 1 cut(s) 658
BstV1I GCAGC 2 cut(s) 88, 559
BstV2I GAAGAC 1 cut(s) 256
BstX2I RGATCY 1 cut(s) 158
BstYI RGATCY 1 cut(s) 158
BtsCI GGATG 1 cut(s) 628
BtsIMutI CAGTG 1 cut(s) 655
BveI ACCTGC 1 cut(s) 559
Cac8I GCNNGC 1 cut(s) 98
CciI TCATGA 2 cut(s) 556, 668
CfoI GCGC 1 cut(s) 591
CviAII CATG 6 cut(s) 34, 121, 163, 557, 585, 669
CviJI RGCY 7 cut(s) 56, 100, 216, 310, 421, 523, 550
CviKI_1 RGCY 7 cut(s) 56, 100, 216, 310, 421, 523, 550
DdeI CTNAG 2 cut(s) 26, 468
DpnI GATC 3 cut(s) 160, 281, 555
DpnII GATC 3 cut(s) 158, 279, 553
DraIII CACNNNGTG 1 cut(s) 619
DriI GACNNNNNGTC 2 cut(s) 124, 367
Eam1104I CTCTTC 1 cut(s) 411
Eam1105I GACNNNNNGTC 2 cut(s) 124, 367
EarI CTCTTC 1 cut(s) 411
EciI GGCGGA 1 cut(s) 317
Eco57I CTGAAG 2 cut(s) 435, 657
EcoRII CCWGG 2 cut(s) 238, 427
FaeI CATG 6 cut(s) 37, 124, 166, 560, 588, 672
FatI CATG 6 cut(s) 33, 120, 162, 556, 584, 668
FauNDI CATATG 1 cut(s) 318
FblI GTMKAC 1 cut(s) 661
Fnu4HI GCNGC 2 cut(s) 77, 548
FokI GGATG 1 cut(s) 635
Fsp4HI GCNGC 2 cut(s) 77, 548
FspBI CTAG 1 cut(s) 153
GlaI GCGC 1 cut(s) 590
GluI GCNGC 2 cut(s) 77, 548
GsuI CTGGAG 1 cut(s) 261
HapII CCGG 2 cut(s) 38, 551
HhaI GCGC 1 cut(s) 591
Hin1II CATG 6 cut(s) 37, 124, 166, 560, 588, 672
Hin6I GCGC 1 cut(s) 589
HinP1I GCGC 1 cut(s) 589
HindIII AAGCTT 2 cut(s) 54, 98
HinfI GANTC 1 cut(s) 256
HpaII CCGG 2 cut(s) 38, 551
HphI GGTGA 2 cut(s) 452, 610
Hpy166II GTNNAC 4 cut(s) 197, 361, 601, 662
Hpy188I TCNGA 6 cut(s) 93, 223, 415, 469, 510, 517
Hpy188III TCNNGA 2 cut(s) 557, 669
Hpy8I GTNNAC 4 cut(s) 197, 361, 601, 662
Hpy99I CGWCG 1 cut(s) 537
HpyAV CCTTC 1 cut(s) 15
HpyCH4III ACNGT 3 cut(s) 369, 401, 659
HpyCH4IV ACGT 1 cut(s) 535
HpyCH4V TGCA 5 cut(s) 381, 406, 456, 480, 568
HpyF10VI GCNNNNNNNGC 1 cut(s) 76
HpyF3I CTNAG 2 cut(s) 26, 468
HpySE526I ACGT 1 cut(s) 535
Hsp92II CATG 6 cut(s) 37, 124, 166, 560, 588, 672
HspAI GCGC 1 cut(s) 589
Kzo9I GATC 3 cut(s) 158, 279, 553
LguI GCTCTTC 1 cut(s) 411
LmnI GCTCC 2 cut(s) 93, 307
Lsp1109I GCAGC 2 cut(s) 88, 559
LweI GCATC 1 cut(s) 158
MaeI CTAG 1 cut(s) 153
MaeII ACGT 1 cut(s) 535
MaeIII GTNAC 1 cut(s) 133
MalI GATC 3 cut(s) 160, 281, 555
MboI GATC 3 cut(s) 158, 279, 553
MboII GAAGA 2 cut(s) 256, 428
MflI RGATCY 1 cut(s) 158
MluCI AATT 4 cut(s) 65, 206, 337, 434
MmeI TCCRAC 1 cut(s) 413
MnlI CCTC 4 cut(s) 298, 463, 589, 640
MseI TTAA 1 cut(s) 72
MslI CAYNNNNRTG 1 cut(s) 596
MspCI CTTAAG 1 cut(s) 71
MspI CCGG 2 cut(s) 38, 551
MspR9I CCNGG 2 cut(s) 240, 429
MvaI CCWGG 2 cut(s) 240, 429
MwoI GCNNNNNNNGC 1 cut(s) 76
NdeI CATATG 1 cut(s) 318
NdeII GATC 3 cut(s) 158, 279, 553
NlaIII CATG 6 cut(s) 37, 124, 166, 560, 588, 672
NspI RCATGY 1 cut(s) 37
PagI TCATGA 2 cut(s) 556, 668
PciSI GCTCTTC 1 cut(s) 411
PfeI GAWTC 1 cut(s) 256
PfoI TCCNGGA 1 cut(s) 427
PkrI GCNGC 2 cut(s) 78, 549
Psp6I CCWGG 2 cut(s) 238, 427
PspGI CCWGG 2 cut(s) 238, 427
PsuI RGATCY 1 cut(s) 158
RseI CAYNNNNRTG 1 cut(s) 596
SapI GCTCTTC 1 cut(s) 411
SaqAI TTAA 1 cut(s) 72
SatI GCNGC 2 cut(s) 77, 548
Sau3AI GATC 3 cut(s) 158, 279, 553
ScrFI CCNGG 2 cut(s) 240, 429
SetI ASST 7 cut(s) 58, 102, 312, 423, 538, 573, 600
SfaNI GCATC 1 cut(s) 158
SfcI CTRYAG 1 cut(s) 658
SmiMI CAYNNNNRTG 1 cut(s) 596
SmlI CTYRAG 1 cut(s) 71
SmoI CTYRAG 1 cut(s) 71
SpeI ACTAGT 1 cut(s) 152
Sse9I AATT 4 cut(s) 65, 206, 337, 434
SsiI CCGC 1 cut(s) 302
SspI AATATT 1 cut(s) 630
SspMI CTAG 1 cut(s) 153
StyD4I CCNGG 2 cut(s) 238, 427
TaaI ACNGT 3 cut(s) 369, 401, 659
TaiI ACGT 1 cut(s) 538
TaqI TCGA 3 cut(s) 185, 278, 532
TasI AATT 4 cut(s) 65, 206, 337, 434
TfiI GAWTC 1 cut(s) 256
Tru1I TTAA 1 cut(s) 72
Tru9I TTAA 1 cut(s) 72
TscAI CASTG 1 cut(s) 662
TseI GCWGC 2 cut(s) 76, 547
TspDTI ATGAA 3 cut(s) 77, 639, 657
TspRI CASTG 1 cut(s) 662
Vha464I CTTAAG 1 cut(s) 71
XapI RAATTY 2 cut(s) 337, 434
XceI RCATGY 1 cut(s) 37
XmiI GTMKAC 1 cut(s) 661
XspI CTAG 1 cut(s) 153
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.