Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0002780

Physical Location & Seq

Genomic Coordinates Forward (+)

29602270 .. 29605015

Gene Structure 2746 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1210300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 843 bp

ATGGCGGACCTAGCAGCCCTTGCTCCTCCTTCTTCTTCTCCTTATTCTCCCCAAAACCCAAGCCAAAACCCTTTACCGTCACCATTAACATCATCGGCGGCGAGGCAATGGAGACCCGCCTCGCAGAGAAACCTGAGAAACCAGTGGTCCAAGCTAGCTTCTCACATTCAGCAATGGGCCTCTTCTTCCTCCGCCGCAAGGTCACACGCCACGAGTCTCGTAAACGCCTTTCTCTCTCTAAAATACATGCCTTCAATGGAGTTGGGCGTTCTAACCGATATGCCCGATTTGCGAAAGAAAGCTTGCCAGAAATTGTCCCAGCTGCAGGAGCTCCATCGGAGAAAACTTTTAGCATCATACAAGGACATGGTGTTAGTTGTAACCGAGATGGTCAGAACTAGTAGATCCATGAGATGCTTCCTCAAAGGGACAAGCAATAGTCCACTTGAACATTATATTGGCTATTCTGAAGATAAAATTGATCCTGGAGATGGTGGCGGCATTCCGGTCTTTACATTTTGGTCAATCTCGTGCTTTGAAAAAGTTGCAGAGGAGCTTGTCCTGATGCTTATATCGGAACTGAATCTGAAGCGTTTGCTTGTGGTGGAGTTACTATCTGTTAGTTGCAAAGTTCCAGCGGTAAACACTATGCATTGGCCAGTTTATCCTAGATTGGATGATCAGCAACCTGATATGCCAGCTACACAATGTAACCAGCAGCCAGATTATGATGTTTTGCAGGTTTATCTAGCGACATGGCTTGCAGAGGTGAATGTAGATGCTCACAGGGTGGATGAAATATATGCGGAAGTCGGGAAGGAAATGCATGTCAAGCTCTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

281

Amino Acids

31.43

Weight (kDa)

7.04

Isoelectric Point (pI)

62.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002780)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07950
fragaria_vesca	FvH4_5g14050 FvH4_5g14050 FvH4_5g14050 FvH4_5g14050 FvH4_5g14150
malus_domestica	MD14G1210300.v1.1 MD17G1029400.v1.1
prunus_persica	Prupe.1G213800_v2.0.a1 Prupe.1G213800_v2.0.a1 Prupe.7G041400_v2.0.a1 Prupe.7G041400_v2.0.a1 Prupe.7G041400_v2.0.a1 Prupe.7G041400_v2.0.a1
pyrus_communis	pycom17g02660
rosa_chinensis	RchiOBHm_Chr4g0399581 RchiOBHm_Chr7g0182771
rosa_laevigata	RLG00000005101 RLG00000009261
rosa_multiflora	Rmu_co8503039.1_g000001 Rmu_sc0000014.1_g000030 Rmu_sc0002285.1_g000035 Rmu_sc0024464.1_g000001
rosa_roxburghii	Rroxscaffold_3G00270990 Rroxscaffold_5G00344490
rosa_rugosa	Rorug04G0017400 Rorug06G0450100 Rorug06G0450200 Rorug06G0450300
rosa_samantha	Rh4AG095300 Rh4BG092700 Rh4CG103800 Rh4DG087700 Rh7AG053900 Rh7BG053400 Rh7CG055000 Rh7DG053200
rosa_wichuraiana	Rw4G007840 Rw7G004390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	730
AciI	CCGC	8 cut(s)	5, 98, 117, 192, 195, 498, 638, 806
AclWI	GGATC	2 cut(s)	399, 476
AcoI	YGGCCR	1 cut(s)	656
AcuI	CTGAAG	2 cut(s)	489, 608
AdeI	CACNNNGTG	1 cut(s)	790
AfiI	CCNNNNNNNGG	3 cut(s)	198, 325, 491
AgsI	TTSAA	3 cut(s)	255, 449, 539
AhlI	ACTAGT	1 cut(s)	398
AjnI	CCWGG	1 cut(s)	484
AjuI	GAANNNNNNNTTGG	2 cut(s)	441, 473
AluBI	AGCT	8 cut(s)	154, 158, 302, 322, 331, 556, 701, 835
AluI	AGCT	8 cut(s)	154, 158, 302, 322, 331, 556, 701, 835
Alw21I	GWGCWC	1 cut(s)	333
Alw26I	GTCTC	2 cut(s)	106, 221
AlwI	GGATC	2 cut(s)	399, 476
AoxI	GGCC	2 cut(s)	177, 656
ApeKI	GCWGC	3 cut(s)	14, 322, 718
AspS9I	GGNCC	3 cut(s)	7, 147, 177
AsuHPI	GGTGA	2 cut(s)	72, 781
AsuNHI	GCTAGC	1 cut(s)	154
AvaII	GGWCC	2 cut(s)	7, 147
BalI	TGGCCA	1 cut(s)	658
BanII	GRGCYC	1 cut(s)	333
BauI	CACGAG	2 cut(s)	211, 529
Bbv12I	GWGCWC	1 cut(s)	333
BbvI	GCAGC	3 cut(s)	26, 309, 730
BccI	CCATC	3 cut(s)	342, 382, 485
BciT130I	CCWGG	1 cut(s)	486
BclI	TGATCA	1 cut(s)	679
BcoDI	GTCTC	2 cut(s)	106, 221
BcuI	ACTAGT	1 cut(s)	398
BfaI	CTAG	5 cut(s)	11, 155, 399, 669, 749
BfmI	CTRYAG	1 cut(s)	323
BfuAI	ACCTGC	1 cut(s)	730
BisI	GCNGC	6 cut(s)	15, 99, 195, 323, 499, 719
BlsI	GCNGC	6 cut(s)	16, 100, 196, 324, 500, 720
Bme1390I	CCNGG	1 cut(s)	486
Bme18I	GGWCC	2 cut(s)	7, 147
BmgT120I	GGNCC	3 cut(s)	7, 147, 177
BmrFI	CCNGG	1 cut(s)	486
BmsI	GCATC	4 cut(s)	362, 404, 555, 769
BmtI	GCTAGC	1 cut(s)	158
BpmI	CTGGAG	1 cut(s)	507
BsaI	GGTCTC	1 cut(s)	106
BsaWI	WCCGGW	1 cut(s)	505
Bsc4I	CCNNNNNNNGG	3 cut(s)	198, 325, 491
Bse1I	ACTGG	2 cut(s)	142, 659
Bse3DI	GCAATG	2 cut(s)	113, 179
BseBI	CCWGG	1 cut(s)	486
BseGI	GGATG	2 cut(s)	682, 799
BseLI	CCNNNNNNNGG	3 cut(s)	198, 325, 491
BseMI	GCAATG	2 cut(s)	113, 179
BseMII	CTCAG	1 cut(s)	125
BseNI	ACTGG	2 cut(s)	142, 659
BseRI	GAGGAG	2 cut(s)	15, 566
BseXI	GCAGC	3 cut(s)	26, 309, 730
BseYI	CCCAGC	1 cut(s)	318
BshFI	GGCC	2 cut(s)	179, 658
BsiHKAI	GWGCWC	1 cut(s)	333
BsiSI	CCGG	1 cut(s)	506
BslFI	GGGAC	2 cut(s)	301, 442
BslI	CCNNNNNNNGG	3 cut(s)	198, 325, 491
BsmAI	GTCTC	2 cut(s)	106, 221
BsmFI	GGGAC	2 cut(s)	301, 442
BsmI	GAATGC	1 cut(s)	501
BsnI	GGCC	2 cut(s)	179, 658
Bso31I	GGTCTC	1 cut(s)	106
Bsp1286I	GDGCHC	1 cut(s)	333
Bsp143I	GATC	3 cut(s)	404, 481, 679
BspACI	CCGC	8 cut(s)	5, 98, 117, 192, 195, 498, 638, 806
BspANI	GGCC	2 cut(s)	179, 658
BspCNI	CTCAG	1 cut(s)	126
BspHI	TCATGA	1 cut(s)	839
BspMAI	CTGCAG	1 cut(s)	327
BspMI	ACCTGC	1 cut(s)	730
BspOI	GCTAGC	1 cut(s)	158
BspPI	GGATC	2 cut(s)	399, 476
BspTNI	GGTCTC	1 cut(s)	106
BsrDI	GCAATG	2 cut(s)	113, 179
BsrI	ACTGG	2 cut(s)	142, 659
BssMI	GATC	3 cut(s)	404, 481, 679
BssSI	CACGAG	2 cut(s)	211, 529
Bst2BI	CACGAG	2 cut(s)	211, 529
Bst2UI	CCWGG	1 cut(s)	486
Bst4CI	ACNGT	1 cut(s)	78
Bst6I	CTCTTC	1 cut(s)	187
BstAPI	GCANNNNNTGC	1 cut(s)	20
BstC8I	GCNNGC	4 cut(s)	156, 304, 699, 762
BstDEI	CTNAG	1 cut(s)	134
BstF5I	GGATG	2 cut(s)	682, 799
BstKTI	GATC	3 cut(s)	407, 484, 682
BstMAI	GTCTC	2 cut(s)	106, 221
BstMBI	GATC	3 cut(s)	404, 481, 679
BstMWI	GCNNNNNNNGC	5 cut(s)	11, 20, 289, 328, 832
BstNI	CCWGG	1 cut(s)	486
BstNSI	RCATGY	2 cut(s)	250, 830
BstSCI	CCNGG	1 cut(s)	484
BstSFI	CTRYAG	1 cut(s)	323
BstV1I	GCAGC	3 cut(s)	26, 309, 730
BstX2I	RGATCY	1 cut(s)	404
BstYI	RGATCY	1 cut(s)	404
BsuRI	GGCC	2 cut(s)	179, 658
BtsCI	GGATG	2 cut(s)	682, 799
BtsIMutI	CAGTG	1 cut(s)	149
BveI	ACCTGC	1 cut(s)	730
Cac8I	GCNNGC	4 cut(s)	156, 304, 699, 762
CciI	TCATGA	1 cut(s)	839
Cfr13I	GGNCC	3 cut(s)	7, 147, 177
CviAII	CATG	6 cut(s)	247, 367, 409, 756, 827, 840
DdeI	CTNAG	1 cut(s)	134
DpnI	GATC	3 cut(s)	406, 483, 681
DpnII	GATC	3 cut(s)	404, 481, 679
DraIII	CACNNNGTG	1 cut(s)	790
EaeI	YGGCCR	1 cut(s)	656
Eam1104I	CTCTTC	1 cut(s)	187
EarI	CTCTTC	1 cut(s)	187
EciI	GGCGGA	2 cut(s)	20, 181
Ecl136II	GAGCTC	1 cut(s)	331
Eco24I	GRGCYC	1 cut(s)	333
Eco31I	GGTCTC	1 cut(s)	106
Eco47I	GGWCC	2 cut(s)	7, 147
Eco53kI	GAGCTC	1 cut(s)	331
Eco57I	CTGAAG	2 cut(s)	489, 608
EcoICRI	GAGCTC	1 cut(s)	331
EcoRII	CCWGG	1 cut(s)	484
EcoT22I	ATGCAT	2 cut(s)	654, 828
EcoT38I	GRGCYC	1 cut(s)	333
FaeI	CATG	6 cut(s)	250, 370, 412, 759, 830, 843
FaqI	GGGAC	2 cut(s)	301, 442
FatI	CATG	6 cut(s)	246, 366, 408, 755, 826, 839
FauI	CCCGC	1 cut(s)	124
FbaI	TGATCA	1 cut(s)	679
Fnu4HI	GCNGC	6 cut(s)	15, 99, 195, 323, 499, 719
FokI	GGATG	2 cut(s)	689, 806
FriOI	GRGCYC	1 cut(s)	333
Fsp4HI	GCNGC	6 cut(s)	15, 99, 195, 323, 499, 719
FspBI	CTAG	5 cut(s)	11, 155, 399, 669, 749
GluI	GCNGC	6 cut(s)	15, 99, 195, 323, 499, 719
GsaI	CCCAGC	1 cut(s)	322
GsuI	CTGGAG	1 cut(s)	507
HaeIII	GGCC	2 cut(s)	179, 658
HapII	CCGG	1 cut(s)	506
Hin1II	CATG	6 cut(s)	250, 370, 412, 759, 830, 843
HindIII	AAGCTT	1 cut(s)	300
HinfI	GANTC	2 cut(s)	214, 583
HpaII	CCGG	1 cut(s)	506
HphI	GGTGA	2 cut(s)	72, 781
Hpy166II	GTNNAC	3 cut(s)	223, 443, 643
Hpy188I	TCNGA	5 cut(s)	339, 395, 469, 577, 588
Hpy188III	TCNNGA	3 cut(s)	562, 814, 840
Hpy8I	GTNNAC	3 cut(s)	223, 443, 643
HpyAV	CCTTC	3 cut(s)	39, 261, 811
HpyCH4III	ACNGT	1 cut(s)	78
HpyCH4V	TGCA	7 cut(s)	325, 548, 627, 652, 739, 764, 826
HpyF10VI	GCNNNNNNNGC	5 cut(s)	11, 20, 289, 328, 832
HpyF3I	CTNAG	1 cut(s)	134
Hsp92II	CATG	6 cut(s)	250, 370, 412, 759, 830, 843
Ksp22I	TGATCA	1 cut(s)	679
Kzo9I	GATC	3 cut(s)	404, 481, 679
LmnI	GCTCC	4 cut(s)	28, 328, 336, 553
Lsp1109I	GCAGC	3 cut(s)	26, 309, 730
LweI	GCATC	4 cut(s)	362, 404, 555, 769
MaeI	CTAG	5 cut(s)	11, 155, 399, 669, 749
MaeIII	GTNAC	5 cut(s)	78, 201, 379, 609, 710
MalI	GATC	3 cut(s)	406, 483, 681
MboI	GATC	3 cut(s)	404, 481, 679
MboII	GAAGA	5 cut(s)	24, 27, 174, 177, 482
MflI	RGATCY	1 cut(s)	404
MhlI	GDGCHC	1 cut(s)	333
MlsI	TGGCCA	1 cut(s)	658
MluCI	AATT	2 cut(s)	311, 477
MluNI	TGGCCA	1 cut(s)	658
MlyI	GAGTC	1 cut(s)	223
MnlI	CCTC	8 cut(s)	36, 96, 130, 190, 199, 431, 544, 760
Mox20I	TGGCCA	1 cut(s)	658
Mph1103I	ATGCAT	2 cut(s)	654, 828
MscI	TGGCCA	1 cut(s)	658
MseI	TTAA	1 cut(s)	86
Msp20I	TGGCCA	1 cut(s)	658
MspA1I	CMGCKG	2 cut(s)	322, 638
MspI	CCGG	1 cut(s)	506
MspR9I	CCNGG	1 cut(s)	486
Mva1269I	GAATGC	1 cut(s)	501
MvaI	CCWGG	1 cut(s)	486
MwoI	GCNNNNNNNGC	5 cut(s)	11, 20, 289, 328, 832
NdeII	GATC	3 cut(s)	404, 481, 679
NheI	GCTAGC	1 cut(s)	154
NlaIII	CATG	6 cut(s)	250, 370, 412, 759, 830, 843
NmuCI	GTSAC	2 cut(s)	78, 201
NsiI	ATGCAT	2 cut(s)	654, 828
NspI	RCATGY	2 cut(s)	250, 830
PagI	TCATGA	1 cut(s)	839
PctI	GAATGC	1 cut(s)	501
PfeI	GAWTC	1 cut(s)	583
PfoI	TCCNGGA	1 cut(s)	484
PkrI	GCNGC	6 cut(s)	16, 100, 196, 324, 500, 720
PleI	GAGTC	1 cut(s)	222
PpsI	GAGTC	1 cut(s)	222
Psp124BI	GAGCTC	1 cut(s)	333
Psp6I	CCWGG	1 cut(s)	484
PspFI	CCCAGC	1 cut(s)	318
PspGI	CCWGG	1 cut(s)	484
PspPI	GGNCC	3 cut(s)	7, 147, 177
PstI	CTGCAG	1 cut(s)	327
PsuI	RGATCY	1 cut(s)	404
PvuII	CAGCTG	1 cut(s)	322
SacI	GAGCTC	1 cut(s)	333
SaqAI	TTAA	1 cut(s)	86
SatI	GCNGC	6 cut(s)	15, 99, 195, 323, 499, 719
Sau3AI	GATC	3 cut(s)	404, 481, 679
Sau96I	GGNCC	3 cut(s)	7, 147, 177
SchI	GAGTC	1 cut(s)	223
ScrFI	CCNGG	1 cut(s)	486
SduI	GDGCHC	1 cut(s)	333
SfaNI	GCATC	4 cut(s)	362, 404, 555, 769
SfcI	CTRYAG	1 cut(s)	323
SinI	GGWCC	2 cut(s)	7, 147
SpeI	ACTAGT	1 cut(s)	398
Sse9I	AATT	2 cut(s)	311, 477
SsiI	CCGC	8 cut(s)	5, 98, 117, 192, 195, 498, 638, 806
SspMI	CTAG	5 cut(s)	11, 155, 399, 669, 749
SstI	GAGCTC	1 cut(s)	333
StyD4I	CCNGG	1 cut(s)	484
TaaI	ACNGT	1 cut(s)	78
TasI	AATT	2 cut(s)	311, 477
TauI	GCSGC	3 cut(s)	101, 197, 501
TfiI	GAWTC	1 cut(s)	583
Tru1I	TTAA	1 cut(s)	86
Tru9I	TTAA	1 cut(s)	86
TscAI	CASTG	1 cut(s)	149
TseFI	GTSAC	2 cut(s)	78, 201
TseI	GCWGC	3 cut(s)	14, 322, 718
Tsp45I	GTSAC	2 cut(s)	78, 201
TspDTI	ATGAA	1 cut(s)	810
TspRI	CASTG	1 cut(s)	149
VpaK11BI	GGWCC	2 cut(s)	7, 147
XceI	RCATGY	2 cut(s)	250, 830
XspI	CTAG	5 cut(s)	11, 155, 399, 669, 749
Zsp2I	ATGCAT	2 cut(s)	654, 828

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.