Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0002780

Physical Location & Seq

Genomic Coordinates Reverse (-)

19179090 .. 19182515

Gene Structure 3426 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG103800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 888 bp

ATGAGACATATTTTGGGCCCGAACCCCAACCTTATTCCATATGGATCCAACGTCCGCAATGAAAGCCCAGAAGAAAATTATGAAAGAAACAAAGGTCAAATATGTCTGTTTCTTCACAGTCATATTCTTCTCCAATTTACTTTAGCTCGGCCTTCCACAATGGAAGCTCTAAACCCAGCAACCCCTTACACTCCGAAATCGACGAACCCGAATCCCCAGACTCCGAGCCAAAGCCCATCATCATTAGCAGCGTCGTCTGCTCGGCTGTGGAGGCCCGCCGCGCAGCGCAACCTGAGAAACCAGTGGTCCAAGTTAGCTTCTTTGAGACAACAATGGGAGTCTGCTTCTTCTAGCGGAAGAGCACACGCCACTTTGCTCGTAAACTCCTACCTTTCCATCAAGTACATGCCTTCAAGGGAGTTGGGGGTTCTCAGCGACATGCCGGATATACTAAAGAAAGCTTCGCAGAAATTGCTTAAGCAGCAGGAACTTTATCGGAGCAAGCTTTTATCATCATACAAGGACATGGTGTCTGTTGTAACTAATATGGTCAAAACTAGTAGATCCATGAGATGCTTTGTCAAAGGGTTAACCAATAGTCCACTTTTACAATCTTCTGGCGATTCCGAATGTAATAATGACCCCGGAGATGGTGGTGGGATTCTAGTCTTCACATTTTGGTCGATCTCTTGCTTTGAGAAAGTGGCGGAGGAGCTTGTCCATATGCTTATATTGGAACTAAATTTGAAGGTAAATTATTGTTTCTGTGGCTGCGGAATTTTTTTTTTTATCTTAGCATGTTCTTTATCTGTTCCTTGTTTGTTTTTATACGTGTTGGTGCTTTTGGTCTGTGCAGCGTTTGCTTGTGGTGGACTTACTGTCAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

295

Amino Acids

32.7

Weight (kDa)

9.04

Isoelectric Point (pI)

60.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002780)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07950
fragaria_vesca	FvH4_5g14050 FvH4_5g14050 FvH4_5g14050 FvH4_5g14050 FvH4_5g14150
malus_domestica	MD14G1210300.v1.1 MD17G1029400.v1.1
prunus_persica	Prupe.1G213800_v2.0.a1 Prupe.1G213800_v2.0.a1 Prupe.7G041400_v2.0.a1 Prupe.7G041400_v2.0.a1 Prupe.7G041400_v2.0.a1 Prupe.7G041400_v2.0.a1
pyrus_communis	pycom17g02660
rosa_chinensis	RchiOBHm_Chr4g0399581 RchiOBHm_Chr7g0182771
rosa_laevigata	RLG00000005101 RLG00000009261
rosa_multiflora	Rmu_co8503039.1_g000001 Rmu_sc0000014.1_g000030 Rmu_sc0002285.1_g000035 Rmu_sc0024464.1_g000001
rosa_roxburghii	Rroxscaffold_3G00270990 Rroxscaffold_5G00344490
rosa_rugosa	Rorug04G0017400 Rorug06G0450100 Rorug06G0450200 Rorug06G0450300
rosa_samantha	Rh4AG095300 Rh4BG092700 Rh4CG103800 Rh4DG087700 Rh7AG053900 Rh7BG053400 Rh7CG055000 Rh7DG053200
rosa_wichuraiana	Rw4G007840 Rw7G004390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	281
AciI	CCGC	6 cut(s)	55, 276, 279, 354, 707, 774
AclWI	GGATC	3 cut(s)	39, 52, 558
AcsI	RAATTY	2 cut(s)	742, 777
AfaI	GTAC	1 cut(s)	404
AfiI	CCNNNNNNNGG	1 cut(s)	650
AflII	CTTAAG	1 cut(s)	476
AflIII	ACRYGT	1 cut(s)	831
AgsI	TTSAA	2 cut(s)	414, 748
AhdI	GACNNNNNGTC	2 cut(s)	529, 878
AhlI	ACTAGT	1 cut(s)	557
AluBI	AGCT	6 cut(s)	146, 167, 317, 461, 505, 715
AluI	AGCT	6 cut(s)	146, 167, 317, 461, 505, 715
Alw21I	GWGCWC	1 cut(s)	364
Alw26I	GTCTC	1 cut(s)	319
AlwI	GGATC	3 cut(s)	39, 52, 558
AoxI	GGCC	3 cut(s)	16, 149, 272
ApaI	GGGCCC	1 cut(s)	20
ApeKI	GCWGC	5 cut(s)	248, 283, 481, 771, 854
ApoI	RAATTY	2 cut(s)	742, 777
AspLEI	GCGC	2 cut(s)	283, 288
AspS9I	GGNCC	4 cut(s)	16, 17, 273, 306
AsuC2I	CCSGG	1 cut(s)	645
AvaII	GGWCC	1 cut(s)	306
BaeGI	GKGCMC	1 cut(s)	20
BamHI	GGATCC	1 cut(s)	44
BanII	GRGCYC	1 cut(s)	20
BbsI	GAAGAC	1 cut(s)	661
Bbv12I	GWGCWC	1 cut(s)	364
BbvI	GCAGC	5 cut(s)	260, 295, 493, 758, 866
BccI	CCATC	3 cut(s)	244, 404, 644
BcnI	CCSGG	1 cut(s)	645
BcoDI	GTCTC	1 cut(s)	319
BcuI	ACTAGT	1 cut(s)	557
BfaI	CTAG	3 cut(s)	351, 558, 665
BfrI	CTTAAG	1 cut(s)	476
BisI	GCNGC	6 cut(s)	249, 279, 284, 482, 772, 855
BlsI	GCNGC	6 cut(s)	250, 280, 285, 483, 773, 856
Bme1390I	CCNGG	1 cut(s)	645
Bme18I	GGWCC	1 cut(s)	306
BmeRI	GACNNNNNGTC	2 cut(s)	529, 878
BmgT120I	GGNCC	4 cut(s)	16, 17, 273, 306
BmiI	GGNNCC	2 cut(s)	18, 46
BmrFI	CCNGG	1 cut(s)	645
BmsI	GCATC	1 cut(s)	563
BpiI	GAAGAC	1 cut(s)	661
BpuMI	CCSGG	1 cut(s)	645
BsaAI	YACGTR	1 cut(s)	832
BsaJI	CCNNGG	1 cut(s)	643
Bsc4I	CCNNNNNNNGG	1 cut(s)	650
Bse1I	ACTGG	1 cut(s)	301
Bse3DI	GCAATG	1 cut(s)	64
BseDI	CCNNGG	1 cut(s)	643
BseLI	CCNNNNNNNGG	1 cut(s)	650
BseMI	GCAATG	1 cut(s)	64
BseMII	CTCAG	2 cut(s)	284, 445
BseNI	ACTGG	1 cut(s)	301
BseRI	GAGGAG	1 cut(s)	725
BseSI	GKGCMC	1 cut(s)	20
BseXI	GCAGC	5 cut(s)	260, 295, 493, 758, 866
BseYI	CCCAGC	1 cut(s)	175
BsgI	GTGCAG	1 cut(s)	873
Bsh1236I	CGCG	1 cut(s)	281
BshFI	GGCC	3 cut(s)	18, 151, 274
BsiHKAI	GWGCWC	1 cut(s)	364
BsiSI	CCGG	2 cut(s)	443, 645
BslI	CCNNNNNNNGG	1 cut(s)	650
BsmAI	GTCTC	1 cut(s)	319
BsnI	GGCC	3 cut(s)	18, 151, 274
Bsp120I	GGGCCC	1 cut(s)	16
Bsp1286I	GDGCHC	2 cut(s)	20, 364
Bsp143I	GATC	3 cut(s)	44, 563, 684
BspACI	CCGC	6 cut(s)	55, 276, 279, 354, 707, 774
BspANI	GGCC	3 cut(s)	18, 151, 274
BspCNI	CTCAG	2 cut(s)	285, 444
BspFNI	CGCG	1 cut(s)	281
BspLI	GGNNCC	2 cut(s)	18, 46
BspPI	GGATC	3 cut(s)	39, 52, 558
BspQI	GCTCTTC	1 cut(s)	352
BspTI	CTTAAG	1 cut(s)	476
BsrDI	GCAATG	1 cut(s)	64
BsrI	ACTGG	1 cut(s)	301
BssECI	CCNNGG	1 cut(s)	643
BssMI	GATC	3 cut(s)	44, 563, 684
Bst4CI	ACNGT	2 cut(s)	119, 880
Bst6I	CTCTTC	1 cut(s)	352
BstAFI	CTTAAG	1 cut(s)	476
BstAPI	GCANNNNNTGC	2 cut(s)	472, 860
BstBAI	YACGTR	1 cut(s)	832
BstC8I	GCNNGC	2 cut(s)	276, 503
BstDEI	CTNAG	3 cut(s)	293, 431, 793
BstFNI	CGCG	1 cut(s)	281
BstHHI	GCGC	2 cut(s)	283, 288
BstKTI	GATC	3 cut(s)	47, 566, 687
BstMAI	GTCTC	1 cut(s)	319
BstMBI	GATC	3 cut(s)	44, 563, 684
BstMWI	GCNNNNNNNGC	7 cut(s)	63, 257, 271, 280, 472, 481, 860
BstNSI	RCATGY	3 cut(s)	409, 442, 801
BstSCI	CCNGG	1 cut(s)	643
BstSLI	GKGCMC	1 cut(s)	20
BstUI	CGCG	1 cut(s)	281
BstV1I	GCAGC	5 cut(s)	260, 295, 493, 758, 866
BstV2I	GAAGAC	1 cut(s)	661
BstX2I	RGATCY	2 cut(s)	44, 563
BstYI	RGATCY	2 cut(s)	44, 563
BsuRI	GGCC	3 cut(s)	18, 151, 274
BtsIMutI	CAGTG	1 cut(s)	308
Cac8I	GCNNGC	2 cut(s)	276, 503
CfoI	GCGC	2 cut(s)	283, 288
Cfr13I	GGNCC	4 cut(s)	16, 17, 273, 306
CseI	GACGC	1 cut(s)	240
Csp6I	GTAC	1 cut(s)	403
CviAII	CATG	5 cut(s)	406, 439, 526, 568, 798
CviQI	GTAC	1 cut(s)	403
DdeI	CTNAG	3 cut(s)	293, 431, 793
DpnI	GATC	3 cut(s)	46, 565, 686
DpnII	GATC	3 cut(s)	44, 563, 684
DriI	GACNNNNNGTC	2 cut(s)	529, 878
Eam1104I	CTCTTC	1 cut(s)	352
Eam1105I	GACNNNNNGTC	2 cut(s)	529, 878
EarI	CTCTTC	1 cut(s)	352
EciI	GGCGGA	1 cut(s)	722
Eco24I	GRGCYC	1 cut(s)	20
Eco47I	GGWCC	1 cut(s)	306
EcoT38I	GRGCYC	1 cut(s)	20
FaeI	CATG	5 cut(s)	409, 442, 529, 571, 801
FatI	CATG	5 cut(s)	405, 438, 525, 567, 797
FauI	CCCGC	1 cut(s)	283
FauNDI	CATATG	2 cut(s)	40, 723
Fnu4HI	GCNGC	6 cut(s)	249, 279, 284, 482, 772, 855
FriOI	GRGCYC	1 cut(s)	20
Fsp4HI	GCNGC	6 cut(s)	249, 279, 284, 482, 772, 855
FspBI	CTAG	3 cut(s)	351, 558, 665
GlaI	GCGC	2 cut(s)	282, 287
GluI	GCNGC	6 cut(s)	249, 279, 284, 482, 772, 855
GsaI	CCCAGC	1 cut(s)	179
HaeIII	GGCC	3 cut(s)	18, 151, 274
HapII	CCGG	2 cut(s)	443, 645
HgaI	GACGC	1 cut(s)	240
HhaI	GCGC	2 cut(s)	283, 288
Hin1II	CATG	5 cut(s)	409, 442, 529, 571, 801
Hin6I	GCGC	2 cut(s)	281, 286
HinP1I	GCGC	2 cut(s)	281, 286
HincII	GTYRAC	1 cut(s)	591
HindII	GTYRAC	1 cut(s)	591
HindIII	AAGCTT	2 cut(s)	459, 503
HinfI	GANTC	5 cut(s)	211, 220, 338, 623, 661
HpaI	GTTAAC	1 cut(s)	591
HpaII	CCGG	2 cut(s)	443, 645
Hpy166II	GTNNAC	4 cut(s)	382, 591, 602, 872
Hpy188I	TCNGA	4 cut(s)	195, 225, 498, 628
Hpy8I	GTNNAC	4 cut(s)	382, 591, 602, 872
Hpy99I	CGWCG	2 cut(s)	205, 256
HpyAV	CCTTC	3 cut(s)	162, 420, 742
HpyCH4III	ACNGT	2 cut(s)	119, 880
HpyCH4IV	ACGT	2 cut(s)	51, 831
HpyCH4V	TGCA	1 cut(s)	854
HpyF10VI	GCNNNNNNNGC	7 cut(s)	63, 257, 271, 280, 472, 481, 860
HpyF3I	CTNAG	3 cut(s)	293, 431, 793
HpySE526I	ACGT	2 cut(s)	51, 831
Hsp92II	CATG	5 cut(s)	409, 442, 529, 571, 801
HspAI	GCGC	2 cut(s)	281, 286
KspAI	GTTAAC	1 cut(s)	591
Kzo9I	GATC	3 cut(s)	44, 563, 684
LguI	GCTCTTC	1 cut(s)	352
LmnI	GCTCC	2 cut(s)	498, 712
LpnPI	CCDG	9 cut(s)	81, 189, 230, 305, 314, 456, 470, 603, 658
Lsp1109I	GCAGC	5 cut(s)	260, 295, 493, 758, 866
LweI	GCATC	1 cut(s)	563
MaeI	CTAG	3 cut(s)	351, 558, 665
MaeII	ACGT	2 cut(s)	51, 831
MaeIII	GTNAC	1 cut(s)	538
MalI	GATC	3 cut(s)	46, 565, 686
MboI	GATC	3 cut(s)	44, 563, 684
MboII	GAAGA	7 cut(s)	83, 104, 119, 339, 369, 606, 661
MflI	RGATCY	2 cut(s)	44, 563
MhlI	GDGCHC	2 cut(s)	20, 364
MluCI	AATT	6 cut(s)	76, 134, 470, 742, 754, 777
MlyI	GAGTC	2 cut(s)	214, 347
MmeI	TCCRAC	1 cut(s)	72
MnlI	CCTC	2 cut(s)	264, 703
MseI	TTAA	2 cut(s)	477, 590
MspCI	CTTAAG	1 cut(s)	476
MspI	CCGG	2 cut(s)	443, 645
MspR9I	CCNGG	1 cut(s)	645
MteI	GCGCNGCGC	1 cut(s)	284
MvnI	CGCG	1 cut(s)	281
MwoI	GCNNNNNNNGC	7 cut(s)	63, 257, 271, 280, 472, 481, 860
NciI	CCSGG	1 cut(s)	645
NdeI	CATATG	2 cut(s)	40, 723
NdeII	GATC	3 cut(s)	44, 563, 684
NlaIII	CATG	5 cut(s)	409, 442, 529, 571, 801
NlaIV	GGNNCC	2 cut(s)	18, 46
NmeAIII	GCCGAG	2 cut(s)	127, 241
NspI	RCATGY	3 cut(s)	409, 442, 801
PciSI	GCTCTTC	1 cut(s)	352
PcsI	WCGNNNNNNNCGW	1 cut(s)	206
PfeI	GAWTC	3 cut(s)	211, 623, 661
PkrI	GCNGC	6 cut(s)	250, 280, 285, 483, 773, 856
PleI	GAGTC	2 cut(s)	214, 346
PpsI	GAGTC	2 cut(s)	214, 346
Ppu21I	YACGTR	1 cut(s)	832
PspFI	CCCAGC	1 cut(s)	175
PspN4I	GGNNCC	2 cut(s)	18, 46
PspOMI	GGGCCC	1 cut(s)	16
PspPI	GGNCC	4 cut(s)	16, 17, 273, 306
PsuI	RGATCY	2 cut(s)	44, 563
RsaI	GTAC	1 cut(s)	404
RsaNI	GTAC	1 cut(s)	403
SapI	GCTCTTC	1 cut(s)	352
SaqAI	TTAA	2 cut(s)	477, 590
SatI	GCNGC	6 cut(s)	249, 279, 284, 482, 772, 855
Sau3AI	GATC	3 cut(s)	44, 563, 684
Sau96I	GGNCC	4 cut(s)	16, 17, 273, 306
SchI	GAGTC	2 cut(s)	214, 347
ScrFI	CCNGG	1 cut(s)	645
SduI	GDGCHC	2 cut(s)	20, 364
SfaNI	GCATC	1 cut(s)	563
SinI	GGWCC	1 cut(s)	306
SmlI	CTYRAG	1 cut(s)	476
SmoI	CTYRAG	1 cut(s)	476
SpeI	ACTAGT	1 cut(s)	557
Sse9I	AATT	6 cut(s)	76, 134, 470, 742, 754, 777
SsiI	CCGC	6 cut(s)	55, 276, 279, 354, 707, 774
SspMI	CTAG	3 cut(s)	351, 558, 665
StyD4I	CCNGG	1 cut(s)	643
TaaI	ACNGT	2 cut(s)	119, 880
TaiI	ACGT	2 cut(s)	54, 834
TaqI	TCGA	2 cut(s)	200, 683
TasI	AATT	6 cut(s)	76, 134, 470, 742, 754, 777
TatI	WGTACW	1 cut(s)	402
TauI	GCSGC	1 cut(s)	281
TfiI	GAWTC	3 cut(s)	211, 623, 661
Tru1I	TTAA	2 cut(s)	477, 590
Tru9I	TTAA	2 cut(s)	477, 590
TscAI	CASTG	1 cut(s)	308
TseI	GCWGC	5 cut(s)	248, 283, 481, 771, 854
TspDTI	ATGAA	2 cut(s)	75, 96
TspRI	CASTG	1 cut(s)	308
Vha464I	CTTAAG	1 cut(s)	476
VpaK11BI	GGWCC	1 cut(s)	306
XapI	RAATTY	2 cut(s)	742, 777
XceI	RCATGY	3 cut(s)	409, 442, 801
XspI	CTAG	3 cut(s)	351, 558, 665

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.