Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0002780

Physical Location & Seq

Genomic Coordinates Forward (+)

7729048 .. 7734733

Gene Structure 5686 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G041400.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 984 bp

ATGGCAACGGTGGACCTAACTGAACCCCCAACAGTAGAAACTTTATGCCCAGAAACCCCTTCTTCTTTTTCTTCTTCTCCTCCGCTTTCTCCAAAATCAGCAACCCCATGTCCCCAAAACCCAACCCAAAGCCCCTCCTCACCGTCATCAGTACTAGCGACACCGCTAGCAAGGCTATGGAGACCCACTGCACAGAGAAACCTGAGAAATCAATGGTCCAAATTAGCTTCTTACAGACAGCAATGGGCATCTTCTTCTTCTACTGCACGATCACATGCCACCGCTCTTGTAAACGCCTATCTTTCTCAAAAATACATGCCTTCCATGGAGTTGGGCGCCTTGAGGGATATTCCTAATATAAAAAAGAAAGCTTCTCAGAAATTGTTTAAGCAGCAGGTGCTTCATCGAGGCAAACTTTTATCATCATATAAACACATGGTCTCAGTTGTAATTCACATGGTTAACATTAGTAGATCCATGAAATGCTTTCTCAAAGGCGCAAGCAGTAGCCCACTTGTACACTTTTCTGGCTATTCCGAAGATAAGAATGATCCTGGGGATGGTGGTGGAATTCCAGTCTTTACATTTTGGACGATCTCTTGCTTCGAAGAAGTGGCAGAGGAGCTTGTCCAGATGTTTATATTGGAGTTAAATTTGAAGCGTTTGCTAGTGGTGGAGTTGCTATCCATTAGTTGCAAAGTTCCACCTTTAAACAGTTTGCATTGGTCAGATGAGCTTTATCCGGGAGAATTTAGTGATTTGAGTATATGTAACTTATACTCTGAGGAAACTTGTAAGCCAGTCTATCCAAGATTGGATGATCAGAAATCTGGAATGCCAGCTGCGCGATTTAACCAGCAGCCAGATCATGATGTTTTGCAGGTTTATCTAACAACATGGCTTGCAGAGGTGAACATAGATTCTGACAGGGTGGATGAAATATTTGTGGAAGTTGGCGATGAAATGCATGTTATGATTTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

328

Amino Acids

36.53

Weight (kDa)

6.08

Isoelectric Point (pI)

58.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002780)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07950
fragaria_vesca	FvH4_5g14050 FvH4_5g14050 FvH4_5g14050 FvH4_5g14050 FvH4_5g14150
malus_domestica	MD14G1210300.v1.1 MD17G1029400.v1.1
prunus_persica	Prupe.1G213800_v2.0.a1 Prupe.1G213800_v2.0.a1 Prupe.7G041400_v2.0.a1 Prupe.7G041400_v2.0.a1 Prupe.7G041400_v2.0.a1 Prupe.7G041400_v2.0.a1
pyrus_communis	pycom17g02660
rosa_chinensis	RchiOBHm_Chr4g0399581 RchiOBHm_Chr7g0182771
rosa_laevigata	RLG00000005101 RLG00000009261
rosa_multiflora	Rmu_co8503039.1_g000001 Rmu_sc0000014.1_g000030 Rmu_sc0002285.1_g000035 Rmu_sc0024464.1_g000001
rosa_roxburghii	Rroxscaffold_3G00270990 Rroxscaffold_5G00344490
rosa_rugosa	Rorug04G0017400 Rorug06G0450100 Rorug06G0450200 Rorug06G0450300
rosa_samantha	Rh4AG095300 Rh4BG092700 Rh4CG103800 Rh4DG087700 Rh7AG053900 Rh7BG053400 Rh7CG055000 Rh7DG053200
rosa_wichuraiana	Rw4G007840 Rw7G004390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	385
Acc36I	ACCTGC	2 cut(s)	385, 871
AccB1I	GGYRCC	1 cut(s)	335
AccBSI	CCGCTC	1 cut(s)	284
AccII	CGCG	1 cut(s)	847
AciI	CCGC	3 cut(s)	83, 164, 282
AclWI	GGATC	2 cut(s)	468, 545
AcsI	RAATTY	3 cut(s)	570, 652, 749
AcyI	GRCGYC	1 cut(s)	336
AfaI	GTAC	2 cut(s)	153, 519
AfiI	CCNNNNNNNGG	1 cut(s)	560
AgsI	TTSAA	1 cut(s)	658
AjnI	CCWGG	1 cut(s)	553
AluBI	AGCT	5 cut(s)	227, 371, 625, 736, 842
AluI	AGCT	5 cut(s)	227, 371, 625, 736, 842
Alw26I	GTCTC	2 cut(s)	175, 445
AlwI	GGATC	2 cut(s)	468, 545
ApeKI	GCWGC	3 cut(s)	391, 842, 859
ApoI	RAATTY	3 cut(s)	570, 652, 749
AspLEI	GCGC	3 cut(s)	338, 500, 847
AspS9I	GGNCC	2 cut(s)	13, 216
AsuC2I	CCSGG	1 cut(s)	744
AsuHPI	GGTGA	2 cut(s)	132, 922
AsuII	TTCGAA	1 cut(s)	606
AsuNHI	GCTAGC	1 cut(s)	166
AvaII	GGWCC	2 cut(s)	13, 216
BanI	GGYRCC	1 cut(s)	335
BbvI	GCAGC	3 cut(s)	403, 829, 871
BccI	CCATC	1 cut(s)	554
BciT130I	CCWGG	1 cut(s)	555
BclI	TGATCA	1 cut(s)	820
BcnI	CCSGG	1 cut(s)	744
BcoDI	GTCTC	2 cut(s)	175, 445
BfaI	CTAG	3 cut(s)	155, 167, 668
BfoI	RGCGCY	1 cut(s)	339
BfuAI	ACCTGC	2 cut(s)	385, 871
BisI	GCNGC	3 cut(s)	392, 843, 860
BlsI	GCNGC	3 cut(s)	393, 844, 861
BmcAI	AGTACT	1 cut(s)	153
Bme1390I	CCNGG	2 cut(s)	555, 744
Bme18I	GGWCC	2 cut(s)	13, 216
BmgT120I	GGNCC	2 cut(s)	13, 216
BmiI	GGNNCC	1 cut(s)	337
BmrFI	CCNGG	2 cut(s)	555, 744
BmsI	GCATC	1 cut(s)	257
BmtI	GCTAGC	1 cut(s)	170
Bpu14I	TTCGAA	1 cut(s)	606
BpuEI	CTTGAG	1 cut(s)	361
BpuMI	CCSGG	1 cut(s)	744
BsaHI	GRCGYC	1 cut(s)	336
BsaI	GGTCTC	2 cut(s)	175, 445
BsaJI	CCNNGG	2 cut(s)	324, 554
Bsc4I	CCNNNNNNNGG	1 cut(s)	560
Bse1I	ACTGG	2 cut(s)	575, 800
Bse3DI	GCAATG	1 cut(s)	248
BseBI	CCWGG	1 cut(s)	555
BseDI	CCNNGG	2 cut(s)	324, 554
BseGI	GGATG	3 cut(s)	565, 823, 940
BseLI	CCNNNNNNNGG	1 cut(s)	560
BseMI	GCAATG	1 cut(s)	248
BseMII	CTCAG	4 cut(s)	194, 389, 456, 774
BseNI	ACTGG	2 cut(s)	575, 800
BseRI	GAGGAG	3 cut(s)	69, 127, 635
BseXI	GCAGC	3 cut(s)	403, 829, 871
BsgI	GTGCAG	2 cut(s)	174, 249
Bsh1236I	CGCG	1 cut(s)	847
BshNI	GGYRCC	1 cut(s)	335
BsiSI	CCGG	1 cut(s)	743
BslFI	GGGAC	1 cut(s)	96
BslI	CCNNNNNNNGG	1 cut(s)	560
BsmAI	GTCTC	2 cut(s)	175, 445
BsmFI	GGGAC	1 cut(s)	96
BsmI	GAATGC	1 cut(s)	840
Bso31I	GGTCTC	2 cut(s)	175, 445
Bsp119I	TTCGAA	1 cut(s)	606
Bsp1407I	TGTACA	1 cut(s)	517
Bsp143I	GATC	6 cut(s)	269, 473, 550, 594, 820, 865
Bsp19I	CCATGG	1 cut(s)	324
BspACI	CCGC	3 cut(s)	83, 164, 282
BspCNI	CTCAG	4 cut(s)	195, 388, 455, 775
BspFNI	CGCG	1 cut(s)	847
BspHI	TCATGA	2 cut(s)	868, 980
BspLI	GGNNCC	1 cut(s)	337
BspMI	ACCTGC	2 cut(s)	385, 871
BspOI	GCTAGC	1 cut(s)	170
BspPI	GGATC	2 cut(s)	468, 545
BspT104I	TTCGAA	1 cut(s)	606
BspT107I	GGYRCC	1 cut(s)	335
BspTNI	GGTCTC	2 cut(s)	175, 445
BsrBI	CCGCTC	1 cut(s)	284
BsrDI	GCAATG	1 cut(s)	248
BsrGI	TGTACA	1 cut(s)	517
BsrI	ACTGG	2 cut(s)	575, 800
BssECI	CCNNGG	2 cut(s)	324, 554
BssMI	GATC	6 cut(s)	269, 473, 550, 594, 820, 865
BssNI	GRCGYC	1 cut(s)	336
BssT1I	CCWWGG	1 cut(s)	324
Bst2UI	CCWGG	1 cut(s)	555
Bst4CI	ACNGT	4 cut(s)	10, 34, 144, 716
BstACI	GRCGYC	1 cut(s)	336
BstAPI	GCANNNNNTGC	1 cut(s)	397
BstAUI	TGTACA	1 cut(s)	517
BstBI	TTCGAA	1 cut(s)	606
BstC8I	GCNNGC	4 cut(s)	168, 502, 840, 903
BstDEI	CTNAG	4 cut(s)	203, 375, 442, 783
BstDSI	CCRYGG	1 cut(s)	324
BstF5I	GGATG	3 cut(s)	565, 823, 940
BstFNI	CGCG	1 cut(s)	847
BstH2I	RGCGCY	1 cut(s)	339
BstHHI	GCGC	3 cut(s)	338, 500, 847
BstKTI	GATC	6 cut(s)	272, 476, 553, 597, 823, 868
BstMAI	GTCTC	2 cut(s)	175, 445
BstMBI	GATC	6 cut(s)	269, 473, 550, 594, 820, 865
BstMWI	GCNNNNNNNGC	3 cut(s)	172, 397, 844
BstNI	CCWGG	1 cut(s)	555
BstNSI	RCATGY	3 cut(s)	278, 319, 971
BstSCI	CCNGG	2 cut(s)	553, 742
BstUI	CGCG	1 cut(s)	847
BstV1I	GCAGC	3 cut(s)	403, 829, 871
BstX2I	RGATCY	1 cut(s)	473
BstXI	CCANNNNNNTGG	1 cut(s)	331
BstYI	RGATCY	1 cut(s)	473
BtgI	CCRYGG	1 cut(s)	324
BtgZI	GCGATG	1 cut(s)	972
BtsCI	GGATG	3 cut(s)	565, 823, 940
BtsI	GCAGTG	1 cut(s)	186
BtsIMutI	CAGTG	1 cut(s)	186
BveI	ACCTGC	2 cut(s)	385, 871
Cac8I	GCNNGC	4 cut(s)	168, 502, 840, 903
CciI	TCATGA	2 cut(s)	868, 980
CfoI	GCGC	3 cut(s)	338, 500, 847
Cfr13I	GGNCC	2 cut(s)	13, 216
Csp6I	GTAC	2 cut(s)	152, 518
CspCI	CAANNNNNGTGG	2 cut(s)	268, 303
CviQI	GTAC	2 cut(s)	152, 518
DdeI	CTNAG	4 cut(s)	203, 375, 442, 783
DinI	GGCGCC	1 cut(s)	337
DpnI	GATC	6 cut(s)	271, 475, 552, 596, 822, 867
DpnII	GATC	6 cut(s)	269, 473, 550, 594, 820, 865
DraI	TTTAAA	1 cut(s)	711
Eco130I	CCWWGG	1 cut(s)	324
Eco31I	GGTCTC	2 cut(s)	175, 445
Eco47I	GGWCC	2 cut(s)	13, 216
EcoRI	GAATTC	1 cut(s)	570
EcoRII	CCWGG	1 cut(s)	553
EcoT14I	CCWWGG	1 cut(s)	324
EcoT22I	ATGCAT	1 cut(s)	969
EgeI	GGCGCC	1 cut(s)	337
EheI	GGCGCC	1 cut(s)	337
ErhI	CCWWGG	1 cut(s)	324
FaqI	GGGAC	1 cut(s)	96
FbaI	TGATCA	1 cut(s)	820
Fnu4HI	GCNGC	3 cut(s)	392, 843, 860
FokI	GGATG	3 cut(s)	572, 830, 947
Fsp4HI	GCNGC	3 cut(s)	392, 843, 860
FspBI	CTAG	3 cut(s)	155, 167, 668
GlaI	GCGC	3 cut(s)	337, 499, 846
GluI	GCNGC	3 cut(s)	392, 843, 860
HaeII	RGCGCY	1 cut(s)	339
HapII	CCGG	1 cut(s)	743
HhaI	GCGC	3 cut(s)	338, 500, 847
Hin1I	GRCGYC	1 cut(s)	336
Hin6I	GCGC	3 cut(s)	336, 498, 845
HinP1I	GCGC	3 cut(s)	336, 498, 845
HincII	GTYRAC	1 cut(s)	463
HindII	GTYRAC	1 cut(s)	463
HindIII	AAGCTT	1 cut(s)	369
HinfI	GANTC	1 cut(s)	920
HpaI	GTTAAC	1 cut(s)	463
HpaII	CCGG	1 cut(s)	743
HphI	GGTGA	2 cut(s)	132, 922
Hpy166II	GTNNAC	5 cut(s)	13, 292, 463, 520, 913
Hpy188I	TCNGA	6 cut(s)	378, 538, 730, 784, 825, 925
Hpy188III	TCNNGA	4 cut(s)	631, 831, 869, 981
Hpy8I	GTNNAC	5 cut(s)	13, 292, 463, 520, 913
HpyAV	CCTTC	2 cut(s)	69, 330
HpyCH4III	ACNGT	4 cut(s)	10, 34, 144, 716
HpyCH4V	TGCA	7 cut(s)	191, 266, 696, 721, 880, 905, 967
HpyF10VI	GCNNNNNNNGC	3 cut(s)	172, 397, 844
HpyF3I	CTNAG	4 cut(s)	203, 375, 442, 783
Hsp92I	GRCGYC	1 cut(s)	336
HspAI	GCGC	3 cut(s)	336, 498, 845
KasI	GGCGCC	1 cut(s)	335
Ksp22I	TGATCA	1 cut(s)	820
KspAI	GTTAAC	1 cut(s)	463
Kzo9I	GATC	6 cut(s)	269, 473, 550, 594, 820, 865
LmnI	GCTCC	1 cut(s)	622
Lsp1109I	GCAGC	3 cut(s)	403, 829, 871
LweI	GCATC	1 cut(s)	257
MaeI	CTAG	3 cut(s)	155, 167, 668
MaeIII	GTNAC	1 cut(s)	770
MalI	GATC	6 cut(s)	271, 475, 552, 596, 822, 867
MbiI	CCGCTC	1 cut(s)	284
MboI	GATC	6 cut(s)	269, 473, 550, 594, 820, 865
MboII	GAAGA	8 cut(s)	54, 63, 66, 243, 246, 249, 551, 620
MflI	RGATCY	1 cut(s)	473
MluCI	AATT	6 cut(s)	221, 380, 450, 570, 652, 749
Mly113I	GGCGCC	1 cut(s)	336
MnlI	CCTC	8 cut(s)	90, 145, 148, 336, 401, 613, 778, 901
Mph1103I	ATGCAT	1 cut(s)	969
MseI	TTAA	5 cut(s)	387, 462, 650, 710, 852
MspA1I	CMGCKG	1 cut(s)	842
MspI	CCGG	1 cut(s)	743
MspR9I	CCNGG	2 cut(s)	555, 744
Mva1269I	GAATGC	1 cut(s)	840
MvaI	CCWGG	1 cut(s)	555
MvnI	CGCG	1 cut(s)	847
MwoI	GCNNNNNNNGC	3 cut(s)	172, 397, 844
NarI	GGCGCC	1 cut(s)	336
NciI	CCSGG	1 cut(s)	744
NcoI	CCATGG	1 cut(s)	324
NdeII	GATC	6 cut(s)	269, 473, 550, 594, 820, 865
NheI	GCTAGC	1 cut(s)	166
NlaIV	GGNNCC	1 cut(s)	337
NsiI	ATGCAT	1 cut(s)	969
NspI	RCATGY	3 cut(s)	278, 319, 971
NspV	TTCGAA	1 cut(s)	606
PagI	TCATGA	2 cut(s)	868, 980
PaqCI	CACCTGC	1 cut(s)	385
PctI	GAATGC	1 cut(s)	840
PfeI	GAWTC	1 cut(s)	920
PfoI	TCCNGGA	1 cut(s)	742
PkrI	GCNGC	3 cut(s)	393, 844, 861
PluTI	GGCGCC	1 cut(s)	339
Psp6I	CCWGG	1 cut(s)	553
PspGI	CCWGG	1 cut(s)	553
PspN4I	GGNNCC	1 cut(s)	337
PspPI	GGNCC	2 cut(s)	13, 216
PsuI	RGATCY	1 cut(s)	473
PvuII	CAGCTG	1 cut(s)	842
RsaI	GTAC	2 cut(s)	153, 519
RsaNI	GTAC	2 cut(s)	152, 518
SaqAI	TTAA	5 cut(s)	387, 462, 650, 710, 852
SatI	GCNGC	3 cut(s)	392, 843, 860
Sau3AI	GATC	6 cut(s)	269, 473, 550, 594, 820, 865
Sau96I	GGNCC	2 cut(s)	13, 216
ScaI	AGTACT	1 cut(s)	153
ScrFI	CCNGG	2 cut(s)	555, 744
SfaNI	GCATC	1 cut(s)	257
SfoI	GGCGCC	1 cut(s)	337
SfuI	TTCGAA	1 cut(s)	606
SinI	GGWCC	2 cut(s)	13, 216
SmlI	CTYRAG	1 cut(s)	340
SmoI	CTYRAG	1 cut(s)	340
Sse9I	AATT	6 cut(s)	221, 380, 450, 570, 652, 749
SsiI	CCGC	3 cut(s)	83, 164, 282
SspDI	GGCGCC	1 cut(s)	335
SspI	AATATT	1 cut(s)	942
SspMI	CTAG	3 cut(s)	155, 167, 668
StyD4I	CCNGG	2 cut(s)	553, 742
StyI	CCWWGG	1 cut(s)	324
TaaI	ACNGT	4 cut(s)	10, 34, 144, 716
TaqI	TCGA	2 cut(s)	406, 606
TasI	AATT	6 cut(s)	221, 380, 450, 570, 652, 749
TatI	WGTACW	2 cut(s)	151, 517
TfiI	GAWTC	1 cut(s)	920
Tru1I	TTAA	5 cut(s)	387, 462, 650, 710, 852
Tru9I	TTAA	5 cut(s)	387, 462, 650, 710, 852
TscAI	CASTG	1 cut(s)	193
TseI	GCWGC	3 cut(s)	391, 842, 859
TspDTI	ATGAA	5 cut(s)	392, 494, 951, 969, 975
TspRI	CASTG	1 cut(s)	193
VpaK11BI	GGWCC	2 cut(s)	13, 216
XapI	RAATTY	3 cut(s)	570, 652, 749
XceI	RCATGY	3 cut(s)	278, 319, 971
XspI	CTAG	3 cut(s)	155, 167, 668
ZrmI	AGTACT	1 cut(s)	153
Zsp2I	ATGCAT	1 cut(s)	969

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.