Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0002780

Physical Location & Seq

Genomic Coordinates Forward (+)

22695207 .. 22702199

Gene Structure 6993 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G213800.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

ATGCTACTTTACTTAATTTTGTTTCAGGTGCTTCATCGAGGCAAACTTTTAGCATCATATAAACACATGGTCTCAGTTGTAATTCACATGGTTAGCATTAGTAGATCCATGAAATGCTTTCTCAAAGGCGCAAGCAGTAGTCCACTTGTACACTTTTCTGGCTATTCCAAAGATAAGAATGATCCTGGGGATGGTGGTGAAATTCTAGTCTTTACATTTTGGACGATCTCTTGCTTCGAAGAAGTGGCAGAGGAGCTTGTCCAGATGTTTATATTGGAGTTAAATTTGAAGCGTTTGCTTGTGGTGGATTTGCCTTGGTCAGATGAGCTTTATCCGGGAGAATTTAGTGATTTGAGTATATGTAACTTATACTCTGAGGAAACTTGTAAGCCAGTCTATCCAAGATTGAATGATCAGAAATCTGAAATGCCAGCTGCACGATTTAACCAGCAGCCAGATCATGATGTTTTGCAGGTTTATCTAACAACATGGCTTGCAGAGGTGAACATAGATTCTGAAAGGGTGGATGAAATATTTGTGGAAGTTGGCGATGAAATGCATGTTACGATTTCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

192

Amino Acids

21.9

Weight (kDa)

4.75

Isoelectric Point (pI)

40.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002780)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07950
fragaria_vesca	FvH4_5g14050 FvH4_5g14050 FvH4_5g14050 FvH4_5g14050 FvH4_5g14150
malus_domestica	MD14G1210300.v1.1 MD17G1029400.v1.1
prunus_persica	Prupe.1G213800_v2.0.a1 Prupe.1G213800_v2.0.a1 Prupe.7G041400_v2.0.a1 Prupe.7G041400_v2.0.a1 Prupe.7G041400_v2.0.a1 Prupe.7G041400_v2.0.a1
pyrus_communis	pycom17g02660
rosa_chinensis	RchiOBHm_Chr4g0399581 RchiOBHm_Chr7g0182771
rosa_laevigata	RLG00000005101 RLG00000009261
rosa_multiflora	Rmu_co8503039.1_g000001 Rmu_sc0000014.1_g000030 Rmu_sc0002285.1_g000035 Rmu_sc0024464.1_g000001
rosa_roxburghii	Rroxscaffold_3G00270990 Rroxscaffold_5G00344490
rosa_rugosa	Rorug04G0017400 Rorug06G0450100 Rorug06G0450200 Rorug06G0450300
rosa_samantha	Rh4AG095300 Rh4BG092700 Rh4CG103800 Rh4DG087700 Rh7AG053900 Rh7BG053400 Rh7CG055000 Rh7DG053200
rosa_wichuraiana	Rw4G007840 Rw7G004390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	463
AclWI	GGATC	2 cut(s)	99, 176
AcsI	RAATTY	3 cut(s)	201, 283, 341
AfaI	GTAC	1 cut(s)	150
AfiI	CCNNNNNNNGG	1 cut(s)	191
AgsI	TTSAA	2 cut(s)	289, 409
AjnI	CCWGG	1 cut(s)	184
AluBI	AGCT	3 cut(s)	256, 328, 434
AluI	AGCT	3 cut(s)	256, 328, 434
Alw26I	GTCTC	1 cut(s)	76
AlwI	GGATC	2 cut(s)	99, 176
ApeKI	GCWGC	2 cut(s)	434, 451
ApoI	RAATTY	3 cut(s)	201, 283, 341
AspLEI	GCGC	1 cut(s)	131
AsuC2I	CCSGG	1 cut(s)	336
AsuHPI	GGTGA	2 cut(s)	209, 514
AsuII	TTCGAA	1 cut(s)	237
BbvI	GCAGC	2 cut(s)	421, 463
BccI	CCATC	1 cut(s)	185
BciT130I	CCWGG	1 cut(s)	186
BclI	TGATCA	1 cut(s)	412
BcnI	CCSGG	1 cut(s)	336
BcoDI	GTCTC	1 cut(s)	76
BfaI	CTAG	1 cut(s)	206
BfuAI	ACCTGC	1 cut(s)	463
BisI	GCNGC	2 cut(s)	435, 452
BlsI	GCNGC	2 cut(s)	436, 453
Bme1390I	CCNGG	2 cut(s)	186, 336
BmrFI	CCNGG	2 cut(s)	186, 336
BmsI	GCATC	1 cut(s)	62
Bpu14I	TTCGAA	1 cut(s)	237
BpuMI	CCSGG	1 cut(s)	336
BsaI	GGTCTC	1 cut(s)	76
BsaJI	CCNNGG	2 cut(s)	185, 314
Bsc4I	CCNNNNNNNGG	1 cut(s)	191
Bse1I	ACTGG	1 cut(s)	392
BseBI	CCWGG	1 cut(s)	186
BseDI	CCNNGG	2 cut(s)	185, 314
BseGI	GGATG	2 cut(s)	196, 532
BseLI	CCNNNNNNNGG	1 cut(s)	191
BseMII	CTCAG	2 cut(s)	87, 366
BseNI	ACTGG	1 cut(s)	392
BseRI	GAGGAG	1 cut(s)	266
BseXI	GCAGC	2 cut(s)	421, 463
BsgI	GTGCAG	1 cut(s)	420
BsiSI	CCGG	1 cut(s)	335
BslI	CCNNNNNNNGG	1 cut(s)	191
BsmAI	GTCTC	1 cut(s)	76
Bso31I	GGTCTC	1 cut(s)	76
Bsp119I	TTCGAA	1 cut(s)	237
Bsp1407I	TGTACA	1 cut(s)	148
Bsp143I	GATC	5 cut(s)	104, 181, 225, 412, 457
BspCNI	CTCAG	2 cut(s)	86, 367
BspHI	TCATGA	1 cut(s)	460
BspMI	ACCTGC	1 cut(s)	463
BspPI	GGATC	2 cut(s)	99, 176
BspT104I	TTCGAA	1 cut(s)	237
BspTNI	GGTCTC	1 cut(s)	76
BsrGI	TGTACA	1 cut(s)	148
BsrI	ACTGG	1 cut(s)	392
BssECI	CCNNGG	2 cut(s)	185, 314
BssMI	GATC	5 cut(s)	104, 181, 225, 412, 457
BssT1I	CCWWGG	1 cut(s)	314
Bst2UI	CCWGG	1 cut(s)	186
BstAUI	TGTACA	1 cut(s)	148
BstBI	TTCGAA	1 cut(s)	237
BstC8I	GCNNGC	3 cut(s)	133, 432, 495
BstDEI	CTNAG	2 cut(s)	73, 375
BstF5I	GGATG	2 cut(s)	196, 532
BstHHI	GCGC	1 cut(s)	131
BstKTI	GATC	5 cut(s)	107, 184, 228, 415, 460
BstMAI	GTCTC	1 cut(s)	76
BstMBI	GATC	5 cut(s)	104, 181, 225, 412, 457
BstNI	CCWGG	1 cut(s)	186
BstNSI	RCATGY	1 cut(s)	563
BstSCI	CCNGG	2 cut(s)	184, 334
BstV1I	GCAGC	2 cut(s)	421, 463
BstX2I	RGATCY	1 cut(s)	104
BstYI	RGATCY	1 cut(s)	104
BtgZI	GCGATG	1 cut(s)	564
BtsCI	GGATG	2 cut(s)	196, 532
BveI	ACCTGC	1 cut(s)	463
Cac8I	GCNNGC	3 cut(s)	133, 432, 495
CciI	TCATGA	1 cut(s)	460
CfoI	GCGC	1 cut(s)	131
Csp6I	GTAC	1 cut(s)	149
CviAII	CATG	6 cut(s)	67, 88, 109, 461, 489, 560
CviJI	RGCY	7 cut(s)	162, 256, 328, 391, 434, 454, 493
CviKI_1	RGCY	7 cut(s)	162, 256, 328, 391, 434, 454, 493
CviQI	GTAC	1 cut(s)	149
DdeI	CTNAG	2 cut(s)	73, 375
DpnI	GATC	5 cut(s)	106, 183, 227, 414, 459
DpnII	GATC	5 cut(s)	104, 181, 225, 412, 457
Eco130I	CCWWGG	1 cut(s)	314
Eco31I	GGTCTC	1 cut(s)	76
EcoRII	CCWGG	1 cut(s)	184
EcoT14I	CCWWGG	1 cut(s)	314
EcoT22I	ATGCAT	1 cut(s)	561
ErhI	CCWWGG	1 cut(s)	314
FaeI	CATG	6 cut(s)	70, 91, 112, 464, 492, 563
FatI	CATG	6 cut(s)	66, 87, 108, 460, 488, 559
FbaI	TGATCA	1 cut(s)	412
Fnu4HI	GCNGC	2 cut(s)	435, 452
FokI	GGATG	2 cut(s)	203, 539
Fsp4HI	GCNGC	2 cut(s)	435, 452
FspBI	CTAG	1 cut(s)	206
GlaI	GCGC	1 cut(s)	130
GluI	GCNGC	2 cut(s)	435, 452
HapII	CCGG	1 cut(s)	335
HhaI	GCGC	1 cut(s)	131
Hin1II	CATG	6 cut(s)	70, 91, 112, 464, 492, 563
Hin6I	GCGC	1 cut(s)	129
HinP1I	GCGC	1 cut(s)	129
HinfI	GANTC	1 cut(s)	512
HpaII	CCGG	1 cut(s)	335
HphI	GGTGA	2 cut(s)	209, 514
Hpy166II	GTNNAC	3 cut(s)	143, 151, 505
Hpy188I	TCNGA	5 cut(s)	322, 376, 417, 424, 517
Hpy188III	TCNNGA	3 cut(s)	262, 461, 573
Hpy8I	GTNNAC	3 cut(s)	143, 151, 505
HpyCH4V	TGCA	4 cut(s)	437, 472, 497, 559
HpyF3I	CTNAG	2 cut(s)	73, 375
Hsp92II	CATG	6 cut(s)	70, 91, 112, 464, 492, 563
HspAI	GCGC	1 cut(s)	129
Ksp22I	TGATCA	1 cut(s)	412
Kzo9I	GATC	5 cut(s)	104, 181, 225, 412, 457
LmnI	GCTCC	1 cut(s)	253
Lsp1109I	GCAGC	2 cut(s)	421, 463
LweI	GCATC	1 cut(s)	62
MaeI	CTAG	1 cut(s)	206
MaeIII	GTNAC	2 cut(s)	362, 562
MalI	GATC	5 cut(s)	106, 183, 227, 414, 459
MboI	GATC	5 cut(s)	104, 181, 225, 412, 457
MboII	GAAGA	1 cut(s)	251
MflI	RGATCY	1 cut(s)	104
MluCI	AATT	5 cut(s)	15, 81, 201, 283, 341
MnlI	CCTC	4 cut(s)	32, 244, 370, 493
Mph1103I	ATGCAT	1 cut(s)	561
MseI	TTAA	3 cut(s)	14, 281, 444
MspA1I	CMGCKG	1 cut(s)	434
MspI	CCGG	1 cut(s)	335
MspR9I	CCNGG	2 cut(s)	186, 336
MvaI	CCWGG	1 cut(s)	186
NciI	CCSGG	1 cut(s)	336
NdeII	GATC	5 cut(s)	104, 181, 225, 412, 457
NlaIII	CATG	6 cut(s)	70, 91, 112, 464, 492, 563
NsiI	ATGCAT	1 cut(s)	561
NspI	RCATGY	1 cut(s)	563
NspV	TTCGAA	1 cut(s)	237
PagI	TCATGA	1 cut(s)	460
PfeI	GAWTC	1 cut(s)	512
PfoI	TCCNGGA	1 cut(s)	334
PkrI	GCNGC	2 cut(s)	436, 453
Psp6I	CCWGG	1 cut(s)	184
PspGI	CCWGG	1 cut(s)	184
PsuI	RGATCY	1 cut(s)	104
PvuII	CAGCTG	1 cut(s)	434
RsaI	GTAC	1 cut(s)	150
RsaNI	GTAC	1 cut(s)	149
SaqAI	TTAA	3 cut(s)	14, 281, 444
SatI	GCNGC	2 cut(s)	435, 452
Sau3AI	GATC	5 cut(s)	104, 181, 225, 412, 457
ScrFI	CCNGG	2 cut(s)	186, 336
SetI	ASST	6 cut(s)	30, 258, 330, 436, 477, 504
SfaNI	GCATC	1 cut(s)	62
SfuI	TTCGAA	1 cut(s)	237
Sse9I	AATT	5 cut(s)	15, 81, 201, 283, 341
SspI	AATATT	1 cut(s)	534
SspMI	CTAG	1 cut(s)	206
StyD4I	CCNGG	2 cut(s)	184, 334
StyI	CCWWGG	1 cut(s)	314
TaqI	TCGA	2 cut(s)	37, 237
TasI	AATT	5 cut(s)	15, 81, 201, 283, 341
TatI	WGTACW	1 cut(s)	148
TfiI	GAWTC	1 cut(s)	512
Tru1I	TTAA	3 cut(s)	14, 281, 444
Tru9I	TTAA	3 cut(s)	14, 281, 444
TseI	GCWGC	2 cut(s)	434, 451
TspDTI	ATGAA	4 cut(s)	23, 125, 543, 567
XapI	RAATTY	3 cut(s)	201, 283, 341
XceI	RCATGY	1 cut(s)	563
XspI	CTAG	1 cut(s)	206
Zsp2I	ATGCAT	1 cut(s)	561

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.