FvH4_5g14150

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0002780
Physical Location & Seq
Reverse (-)
7999147 .. 8000075
929 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g14150.t1

Sequence Viewer

Length: 411 bp
ATGAGATGCTTTGTCAAAGGGTCAAGCAATCGTCCACTTTTACAATTTTCTGGCTATTCAGAACATAATAATGATCCTGGAGATGGTGGTGGGATTCCAGTCTTCACATTATGGTCGATCTCTTGCTTTGAGAACGTGGCTGAGGAGCTTGTTCATATGCTTATGTTGGAGCTAAATGTGAAGCGTTTGCTTGTGGTGGAATTACTGTCGGTTGGTTCCAAAGTTTCACCGGCTAACATTTTGCATTGGTCTGAAGAGCTTTATCCAGGAGAATTTGGTGATTTGAGTATGTGCAACTTATTATCTGAGGAAACTTGTGAACCAGTCAATCCAAGAGTATATGGTCAGAAATCTGATAAGCCGGCTATTCGACGTAACCAGCAGCCAGATCATGATGTTTTGCAGGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

137

Amino Acids

15.22

Weight (kDa)

4.98

Isoelectric Point (pI)

52.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 68
AcsI RAATTY 1 cut(s) 272
AcuI CTGAAG 1 cut(s) 273
AfiI CCNNNNNNNGG 1 cut(s) 83
AjnI CCWGG 2 cut(s) 76, 265
AluBI AGCT 3 cut(s) 148, 172, 259
AluI AGCT 3 cut(s) 148, 172, 259
AlwI GGATC 1 cut(s) 68
ApeKI GCWGC 1 cut(s) 382
ApoI RAATTY 1 cut(s) 272
AsuHPI GGTGA 2 cut(s) 219, 290
BbsI GAAGAC 1 cut(s) 94
BbvCI CCTCAGC 1 cut(s) 141
BbvI GCAGC 1 cut(s) 394
BccI CCATC 1 cut(s) 77
BciT130I CCWGG 2 cut(s) 78, 267
BisI GCNGC 1 cut(s) 383
BlsI GCNGC 1 cut(s) 384
Bme1390I CCNGG 2 cut(s) 78, 267
BmiI GGNNCC 1 cut(s) 217
BmrFI CCNGG 2 cut(s) 78, 267
BpiI GAAGAC 1 cut(s) 94
BpmI CTGGAG 1 cut(s) 99
Bpu10I CCTNAGC 1 cut(s) 141
Bsc4I CCNNNNNNNGG 1 cut(s) 83
Bse118I RCCGGY 2 cut(s) 229, 361
Bse1I ACTGG 2 cut(s) 98, 323
BseBI CCWGG 2 cut(s) 78, 267
BseLI CCNNNNNNNGG 1 cut(s) 83
BseMII CTCAG 2 cut(s) 132, 297
BseNI ACTGG 2 cut(s) 98, 323
BseRI GAGGAG 1 cut(s) 158
BseXI GCAGC 1 cut(s) 394
BsiSI CCGG 2 cut(s) 230, 362
BslI CCNNNNNNNGG 1 cut(s) 83
Bsp143I GATC 3 cut(s) 73, 117, 388
BspCNI CTCAG 2 cut(s) 133, 298
BspHI TCATGA 1 cut(s) 391
BspLI GGNNCC 1 cut(s) 217
BspPI GGATC 1 cut(s) 68
BspQI GCTCTTC 1 cut(s) 249
BsrFI RCCGGY 2 cut(s) 229, 361
BsrI ACTGG 2 cut(s) 98, 323
BssAI RCCGGY 2 cut(s) 229, 361
BssMI GATC 3 cut(s) 73, 117, 388
Bst2UI CCWGG 2 cut(s) 78, 267
Bst4CI ACNGT 1 cut(s) 207
Bst6I CTCTTC 1 cut(s) 249
BstC8I GCNNGC 2 cut(s) 363, 405
BstDEI CTNAG 2 cut(s) 141, 306
BstKTI GATC 3 cut(s) 76, 120, 391
BstMBI GATC 3 cut(s) 73, 117, 388
BstNI CCWGG 2 cut(s) 78, 267
BstSCI CCNGG 2 cut(s) 76, 265
BstV1I GCAGC 1 cut(s) 394
BstV2I GAAGAC 1 cut(s) 94
Cac8I GCNNGC 2 cut(s) 363, 405
CciI TCATGA 1 cut(s) 391
Cfr10I RCCGGY 2 cut(s) 229, 361
CviAII CATG 2 cut(s) 392, 408
CviJI RGCY 9 cut(s) 54, 140, 148, 172, 233, 259, 361, 365, 385
CviKI_1 RGCY 9 cut(s) 54, 140, 148, 172, 233, 259, 361, 365, 385
DdeI CTNAG 2 cut(s) 141, 306
DpnI GATC 3 cut(s) 75, 119, 390
DpnII GATC 3 cut(s) 73, 117, 388
Eam1104I CTCTTC 1 cut(s) 249
EarI CTCTTC 1 cut(s) 249
Eco57I CTGAAG 1 cut(s) 273
EcoRII CCWGG 2 cut(s) 76, 265
FaeI CATG 2 cut(s) 395, 411
FatI CATG 2 cut(s) 391, 407
FauNDI CATATG 1 cut(s) 156
Fnu4HI GCNGC 1 cut(s) 383
Fsp4HI GCNGC 1 cut(s) 383
GluI GCNGC 1 cut(s) 383
GsuI CTGGAG 1 cut(s) 99
HapII CCGG 2 cut(s) 230, 362
Hin1II CATG 2 cut(s) 395, 411
HinfI GANTC 1 cut(s) 94
HpaII CCGG 2 cut(s) 230, 362
HphI GGTGA 2 cut(s) 219, 290
Hpy166II GTNNAC 2 cut(s) 35, 320
Hpy188I TCNGA 5 cut(s) 61, 253, 307, 348, 355
Hpy188III TCNNGA 1 cut(s) 392
Hpy8I GTNNAC 2 cut(s) 35, 320
Hpy99I CGWCG 1 cut(s) 375
HpyCH4III ACNGT 1 cut(s) 207
HpyCH4IV ACGT 2 cut(s) 135, 373
HpyCH4V TGCA 3 cut(s) 244, 294, 403
HpyF3I CTNAG 2 cut(s) 141, 306
HpySE526I ACGT 2 cut(s) 135, 373
Hsp92II CATG 2 cut(s) 395, 411
KroI GCCGGC 1 cut(s) 361
KroNI GCCGGC 1 cut(s) 363
Kzo9I GATC 3 cut(s) 73, 117, 388
LguI GCTCTTC 1 cut(s) 249
LmnI GCTCC 2 cut(s) 145, 169
Lsp1109I GCAGC 1 cut(s) 394
MaeII ACGT 2 cut(s) 135, 373
MaeIII GTNAC 1 cut(s) 374
MalI GATC 3 cut(s) 75, 119, 390
MboI GATC 3 cut(s) 73, 117, 388
MboII GAAGA 2 cut(s) 94, 266
MluCI AATT 3 cut(s) 44, 200, 272
MmeI TCCRAC 1 cut(s) 147
MnlI CCTC 2 cut(s) 136, 301
MroNI GCCGGC 1 cut(s) 361
MslI CAYNNNNRTG 1 cut(s) 69
MspI CCGG 2 cut(s) 230, 362
MspR9I CCNGG 2 cut(s) 78, 267
MvaI CCWGG 2 cut(s) 78, 267
NaeI GCCGGC 1 cut(s) 363
NdeI CATATG 1 cut(s) 156
NdeII GATC 3 cut(s) 73, 117, 388
NgoMIV GCCGGC 1 cut(s) 361
NlaIII CATG 2 cut(s) 395, 411
NlaIV GGNNCC 1 cut(s) 217
PagI TCATGA 1 cut(s) 391
PciSI GCTCTTC 1 cut(s) 249
PdiI GCCGGC 1 cut(s) 363
PfeI GAWTC 1 cut(s) 94
PfoI TCCNGGA 2 cut(s) 76, 265
PkrI GCNGC 1 cut(s) 384
Psp6I CCWGG 2 cut(s) 76, 265
PspGI CCWGG 2 cut(s) 76, 265
PspN4I GGNNCC 1 cut(s) 217
RseI CAYNNNNRTG 1 cut(s) 69
SapI GCTCTTC 1 cut(s) 249
SatI GCNGC 1 cut(s) 383
Sau3AI GATC 3 cut(s) 73, 117, 388
ScrFI CCNGG 2 cut(s) 78, 267
SetI ASST 5 cut(s) 138, 150, 174, 261, 376
SmiMI CAYNNNNRTG 1 cut(s) 69
Sse9I AATT 3 cut(s) 44, 200, 272
StyD4I CCNGG 2 cut(s) 76, 265
TaaI ACNGT 1 cut(s) 207
TaiI ACGT 2 cut(s) 138, 376
TaqI TCGA 2 cut(s) 116, 370
TasI AATT 3 cut(s) 44, 200, 272
TfiI GAWTC 1 cut(s) 94
TseI GCWGC 1 cut(s) 382
TspDTI ATGAA 1 cut(s) 143
XapI RAATTY 1 cut(s) 272
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.