Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0002780

Physical Location & Seq

Genomic Coordinates Forward (+)

3656875 .. 3659763

Gene Structure 2889 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G004390.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 873 bp

ATGGAAGCTCTAAGCCCAGCAACAACTTACACTCCGAAATCGACGAACCCGAATCCCCAGACTCCGACCCAAAGCCCATCACCATTAGCAGCAAACCAATGGTCCAAGCTAGCTTCTTTAAGACAACAATGGGAGTCTGCTTCTTCTAGCGGAAGAGCATACGCAACGTTGCTCGTAAACTCCTACCTTTCCATCAAGTACATGCCTTCAAGGGAGTCGGGGGTTCTCAGCGACATGCCGGATATACTAAAGAAAGCTTCACAGAAATTGCTTAAGCAGCAGGAACTTCATCGGAGCAAGCTTTTATCATCATTCAAGGACATGGTGTCTGTTGTAACTAATATGGTCAAAACTAGTAGATCCATGAGATGCTTTGTCAAAGGGTCGAGCAATAGTCCACTTTTACAATTTTCTGGCTATTCCGAATGTAATAATGACCCTGGAGATGGTGGTGGGATTCCAGTCTTCACATTTTGGTCGATCTCTTGCTTTGAGAAAGTGGCGGAGGAGCTTGTCCATATGCTTATATTGGAACTAAATTTGAAGCGTTTGCTTGTCGTGGACTTACTGTCAGTTAGTTGCAAAGTTCCAACGGCAAACAGTTTGCATTGGTCTGAAGAGCTTTATCCAGGAGAATTTGGTGATTTGAGTATGTGCAACTTATTATCTGAGGAAACTTGTAAACCAGTCTATCCAAGATTGAATGGTCAGAAATCTGATAAGCCAACTATTCGACGTAATCATCAGCAGCCGGATCATGATGTTTTGCAGGTTTATCTAACAACATGGCGCATAGAGGTGAACATTGATACTCACAGGGTGGATGAAATATTTGCTGAAGTTGGGGAGGAAATACACTGTAGACTTTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

290

Amino Acids

32.56

Weight (kDa)

6.66

Isoelectric Point (pI)

53.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002780)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07950
fragaria_vesca	FvH4_5g14050 FvH4_5g14050 FvH4_5g14050 FvH4_5g14050 FvH4_5g14150
malus_domestica	MD14G1210300.v1.1 MD17G1029400.v1.1
prunus_persica	Prupe.1G213800_v2.0.a1 Prupe.1G213800_v2.0.a1 Prupe.7G041400_v2.0.a1 Prupe.7G041400_v2.0.a1 Prupe.7G041400_v2.0.a1 Prupe.7G041400_v2.0.a1
pyrus_communis	pycom17g02660
rosa_chinensis	RchiOBHm_Chr4g0399581 RchiOBHm_Chr7g0182771
rosa_laevigata	RLG00000005101 RLG00000009261
rosa_multiflora	Rmu_co8503039.1_g000001 Rmu_sc0000014.1_g000030 Rmu_sc0002285.1_g000035 Rmu_sc0024464.1_g000001
rosa_roxburghii	Rroxscaffold_3G00270990 Rroxscaffold_5G00344490
rosa_rugosa	Rorug04G0017400 Rorug06G0450100 Rorug06G0450200 Rorug06G0450300
rosa_samantha	Rh4AG095300 Rh4BG092700 Rh4CG103800 Rh4DG087700 Rh7AG053900 Rh7BG053400 Rh7CG055000 Rh7DG053200
rosa_wichuraiana	Rw4G007840 Rw7G004390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	760
AccI	GTMKAC	1 cut(s)	862
AciI	CCGC	2 cut(s)	150, 503
AclI	AACGTT	1 cut(s)	167
AclWI	GGATC	2 cut(s)	354, 762
AcsI	RAATTY	2 cut(s)	538, 635
AcuI	CTGAAG	2 cut(s)	636, 858
AdeI	CACNNNGTG	1 cut(s)	820
AfaI	GTAC	1 cut(s)	200
AfiI	CCNNNNNNNGG	1 cut(s)	446
AflII	CTTAAG	1 cut(s)	272
AgsI	TTSAA	4 cut(s)	210, 316, 544, 703
AhdI	GACNNNNNGTC	2 cut(s)	325, 568
AhlI	ACTAGT	1 cut(s)	353
AjnI	CCWGG	2 cut(s)	439, 628
AluBI	AGCT	7 cut(s)	8, 109, 113, 257, 301, 511, 622
AluI	AGCT	7 cut(s)	8, 109, 113, 257, 301, 511, 622
AlwI	GGATC	2 cut(s)	354, 762
ApeKI	GCWGC	3 cut(s)	89, 277, 748
ApoI	RAATTY	2 cut(s)	538, 635
ArsI	GACNNNNNNTTYG	2 cut(s)	86, 118
AspLEI	GCGC	1 cut(s)	792
AspS9I	GGNCC	1 cut(s)	102
AsuHPI	GGTGA	3 cut(s)	72, 653, 811
AsuNHI	GCTAGC	1 cut(s)	109
AvaII	GGWCC	1 cut(s)	102
BbsI	GAAGAC	1 cut(s)	457
BbvI	GCAGC	3 cut(s)	101, 289, 760
BccI	CCATC	3 cut(s)	85, 200, 440
BceAI	ACGGC	1 cut(s)	609
BciT130I	CCWGG	2 cut(s)	441, 630
BcuI	ACTAGT	1 cut(s)	353
BfaI	CTAG	3 cut(s)	110, 147, 354
BfmI	CTRYAG	1 cut(s)	859
BfrI	CTTAAG	1 cut(s)	272
BfuAI	ACCTGC	1 cut(s)	760
BisI	GCNGC	3 cut(s)	90, 278, 749
BlsI	GCNGC	3 cut(s)	91, 279, 750
Bme1390I	CCNGG	2 cut(s)	441, 630
Bme18I	GGWCC	1 cut(s)	102
BmeRI	GACNNNNNGTC	2 cut(s)	325, 568
BmgT120I	GGNCC	1 cut(s)	102
BmrFI	CCNGG	2 cut(s)	441, 630
BmsI	GCATC	1 cut(s)	359
BmtI	GCTAGC	1 cut(s)	113
BpiI	GAAGAC	1 cut(s)	457
BpmI	CTGGAG	1 cut(s)	462
BsaJI	CCNNGG	1 cut(s)	439
BsaXI	ACNNNNNCTCC	2 cut(s)	16, 46
Bsc4I	CCNNNNNNNGG	1 cut(s)	446
Bse1I	ACTGG	2 cut(s)	461, 686
BseBI	CCWGG	2 cut(s)	441, 630
BseDI	CCNNGG	1 cut(s)	439
BseGI	GGATG	1 cut(s)	829
BseLI	CCNNNNNNNGG	1 cut(s)	446
BseMII	CTCAG	2 cut(s)	241, 660
BseNI	ACTGG	2 cut(s)	461, 686
BseRI	GAGGAG	1 cut(s)	521
BseXI	GCAGC	3 cut(s)	101, 289, 760
BseYI	CCCAGC	1 cut(s)	16
BsiSI	CCGG	2 cut(s)	239, 752
BslI	CCNNNNNNNGG	1 cut(s)	446
Bsp143I	GATC	3 cut(s)	359, 480, 754
BspACI	CCGC	2 cut(s)	150, 503
BspCNI	CTCAG	2 cut(s)	240, 661
BspHI	TCATGA	2 cut(s)	757, 869
BspMI	ACCTGC	1 cut(s)	760
BspOI	GCTAGC	1 cut(s)	113
BspPI	GGATC	2 cut(s)	354, 762
BspQI	GCTCTTC	2 cut(s)	148, 612
BspTI	CTTAAG	1 cut(s)	272
BsrI	ACTGG	2 cut(s)	461, 686
BssECI	CCNNGG	1 cut(s)	439
BssMI	GATC	3 cut(s)	359, 480, 754
Bst2UI	CCWGG	2 cut(s)	441, 630
Bst4CI	ACNGT	3 cut(s)	570, 602, 860
Bst6I	CTCTTC	2 cut(s)	148, 612
BstAFI	CTTAAG	1 cut(s)	272
BstC8I	GCNNGC	2 cut(s)	111, 299
BstDEI	CTNAG	3 cut(s)	11, 227, 669
BstF5I	GGATG	1 cut(s)	829
BstHHI	GCGC	1 cut(s)	792
BstKTI	GATC	3 cut(s)	362, 483, 757
BstMBI	GATC	3 cut(s)	359, 480, 754
BstMWI	GCNNNNNNNGC	1 cut(s)	277
BstNI	CCWGG	2 cut(s)	441, 630
BstNSI	RCATGY	2 cut(s)	205, 238
BstSCI	CCNGG	2 cut(s)	439, 628
BstSFI	CTRYAG	1 cut(s)	859
BstV1I	GCAGC	3 cut(s)	101, 289, 760
BstV2I	GAAGAC	1 cut(s)	457
BstX2I	RGATCY	1 cut(s)	359
BstYI	RGATCY	1 cut(s)	359
BtsCI	GGATG	1 cut(s)	829
BtsIMutI	CAGTG	1 cut(s)	856
BveI	ACCTGC	1 cut(s)	760
Cac8I	GCNNGC	2 cut(s)	111, 299
CciI	TCATGA	2 cut(s)	757, 869
CfoI	GCGC	1 cut(s)	792
Cfr13I	GGNCC	1 cut(s)	102
Csp6I	GTAC	1 cut(s)	199
CviAII	CATG	7 cut(s)	202, 235, 322, 364, 758, 786, 870
CviQI	GTAC	1 cut(s)	199
DdeI	CTNAG	3 cut(s)	11, 227, 669
DpnI	GATC	3 cut(s)	361, 482, 756
DpnII	GATC	3 cut(s)	359, 480, 754
DraIII	CACNNNGTG	1 cut(s)	820
DriI	GACNNNNNGTC	2 cut(s)	325, 568
Eam1104I	CTCTTC	2 cut(s)	148, 612
Eam1105I	GACNNNNNGTC	2 cut(s)	325, 568
EarI	CTCTTC	2 cut(s)	148, 612
EciI	GGCGGA	1 cut(s)	518
Eco47I	GGWCC	1 cut(s)	102
Eco57I	CTGAAG	2 cut(s)	636, 858
EcoRII	CCWGG	2 cut(s)	439, 628
FaeI	CATG	7 cut(s)	205, 238, 325, 367, 761, 789, 873
FatI	CATG	7 cut(s)	201, 234, 321, 363, 757, 785, 869
FauNDI	CATATG	1 cut(s)	519
FblI	GTMKAC	1 cut(s)	862
Fnu4HI	GCNGC	3 cut(s)	90, 278, 749
FokI	GGATG	1 cut(s)	836
Fsp4HI	GCNGC	3 cut(s)	90, 278, 749
FspBI	CTAG	3 cut(s)	110, 147, 354
GlaI	GCGC	1 cut(s)	791
GluI	GCNGC	3 cut(s)	90, 278, 749
GsaI	CCCAGC	1 cut(s)	20
GsuI	CTGGAG	1 cut(s)	462
HapII	CCGG	2 cut(s)	239, 752
HhaI	GCGC	1 cut(s)	792
Hin1II	CATG	7 cut(s)	205, 238, 325, 367, 761, 789, 873
Hin6I	GCGC	1 cut(s)	790
HinP1I	GCGC	1 cut(s)	790
HindIII	AAGCTT	2 cut(s)	255, 299
HinfI	GANTC	5 cut(s)	52, 61, 134, 215, 457
HpaII	CCGG	2 cut(s)	239, 752
HphI	GGTGA	3 cut(s)	72, 653, 811
Hpy166II	GTNNAC	6 cut(s)	178, 398, 562, 683, 802, 863
Hpy188I	TCNGA	8 cut(s)	36, 66, 294, 424, 616, 670, 711, 718
Hpy188III	TCNNGA	2 cut(s)	758, 870
Hpy8I	GTNNAC	6 cut(s)	178, 398, 562, 683, 802, 863
Hpy99I	CGWCG	2 cut(s)	46, 738
HpyAV	CCTTC	1 cut(s)	216
HpyCH4III	ACNGT	3 cut(s)	570, 602, 860
HpyCH4IV	ACGT	2 cut(s)	167, 736
HpyCH4V	TGCA	4 cut(s)	582, 607, 657, 769
HpyF10VI	GCNNNNNNNGC	1 cut(s)	277
HpyF3I	CTNAG	3 cut(s)	11, 227, 669
HpySE526I	ACGT	2 cut(s)	167, 736
Hsp92II	CATG	7 cut(s)	205, 238, 325, 367, 761, 789, 873
HspAI	GCGC	1 cut(s)	790
Kzo9I	GATC	3 cut(s)	359, 480, 754
LguI	GCTCTTC	2 cut(s)	148, 612
LmnI	GCTCC	2 cut(s)	294, 508
Lsp1109I	GCAGC	3 cut(s)	101, 289, 760
LweI	GCATC	1 cut(s)	359
MaeI	CTAG	3 cut(s)	110, 147, 354
MaeII	ACGT	2 cut(s)	167, 736
MaeIII	GTNAC	1 cut(s)	334
MalI	GATC	3 cut(s)	361, 482, 756
MboI	GATC	3 cut(s)	359, 480, 754
MboII	GAAGA	4 cut(s)	135, 165, 457, 629
MflI	RGATCY	1 cut(s)	359
MluCI	AATT	4 cut(s)	266, 407, 538, 635
MlyI	GAGTC	3 cut(s)	55, 143, 224
MmeI	TCCRAC	2 cut(s)	89, 614
MnlI	CCTC	4 cut(s)	499, 664, 790, 841
MseI	TTAA	2 cut(s)	119, 273
MslI	CAYNNNNRTG	1 cut(s)	797
MspCI	CTTAAG	1 cut(s)	272
MspI	CCGG	2 cut(s)	239, 752
MspR9I	CCNGG	2 cut(s)	441, 630
MvaI	CCWGG	2 cut(s)	441, 630
MwoI	GCNNNNNNNGC	1 cut(s)	277
NdeI	CATATG	1 cut(s)	519
NdeII	GATC	3 cut(s)	359, 480, 754
NheI	GCTAGC	1 cut(s)	109
NlaIII	CATG	7 cut(s)	205, 238, 325, 367, 761, 789, 873
NspI	RCATGY	2 cut(s)	205, 238
PagI	TCATGA	2 cut(s)	757, 869
PciSI	GCTCTTC	2 cut(s)	148, 612
PcsI	WCGNNNNNNNCGW	1 cut(s)	47
PfeI	GAWTC	2 cut(s)	52, 457
PfoI	TCCNGGA	1 cut(s)	628
PkrI	GCNGC	3 cut(s)	91, 279, 750
PleI	GAGTC	3 cut(s)	55, 142, 223
PpsI	GAGTC	3 cut(s)	55, 142, 223
Psp1406I	AACGTT	1 cut(s)	167
Psp6I	CCWGG	2 cut(s)	439, 628
PspFI	CCCAGC	1 cut(s)	16
PspGI	CCWGG	2 cut(s)	439, 628
PspPI	GGNCC	1 cut(s)	102
PsuI	RGATCY	1 cut(s)	359
RsaI	GTAC	1 cut(s)	200
RsaNI	GTAC	1 cut(s)	199
RseI	CAYNNNNRTG	1 cut(s)	797
SapI	GCTCTTC	2 cut(s)	148, 612
SaqAI	TTAA	2 cut(s)	119, 273
SatI	GCNGC	3 cut(s)	90, 278, 749
Sau3AI	GATC	3 cut(s)	359, 480, 754
Sau96I	GGNCC	1 cut(s)	102
SchI	GAGTC	3 cut(s)	55, 143, 224
ScrFI	CCNGG	2 cut(s)	441, 630
SfaNI	GCATC	1 cut(s)	359
SfcI	CTRYAG	1 cut(s)	859
SinI	GGWCC	1 cut(s)	102
SmiMI	CAYNNNNRTG	1 cut(s)	797
SmlI	CTYRAG	1 cut(s)	272
SmoI	CTYRAG	1 cut(s)	272
SpeI	ACTAGT	1 cut(s)	353
Sse9I	AATT	4 cut(s)	266, 407, 538, 635
SsiI	CCGC	2 cut(s)	150, 503
SspI	AATATT	1 cut(s)	831
SspMI	CTAG	3 cut(s)	110, 147, 354
StyD4I	CCNGG	2 cut(s)	439, 628
TaaI	ACNGT	3 cut(s)	570, 602, 860
TaiI	ACGT	2 cut(s)	170, 739
TaqI	TCGA	4 cut(s)	41, 386, 479, 733
TasI	AATT	4 cut(s)	266, 407, 538, 635
TatI	WGTACW	1 cut(s)	198
TfiI	GAWTC	2 cut(s)	52, 457
Tru1I	TTAA	2 cut(s)	119, 273
Tru9I	TTAA	2 cut(s)	119, 273
TscAI	CASTG	1 cut(s)	863
TseI	GCWGC	3 cut(s)	89, 277, 748
TspDTI	ATGAA	3 cut(s)	278, 840, 858
TspRI	CASTG	1 cut(s)	863
Vha464I	CTTAAG	1 cut(s)	272
VpaK11BI	GGWCC	1 cut(s)	102
XapI	RAATTY	2 cut(s)	538, 635
XceI	RCATGY	2 cut(s)	205, 238
XmiI	GTMKAC	1 cut(s)	862
XspI	CTAG	3 cut(s)	110, 147, 354

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.