Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002780

Physical Location & Seq

Genomic Coordinates Reverse (-)

16863380 .. 16866687

Gene Structure 3308 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ37169

Sequence Viewer

CDS Protein Promoter (2k)

Length: 972 bp

ATGTCTGTTTCTTCACAGTCATATTCTTCGCCAATTTACTTAGCTCGGCCTTGTACAATGGAAGCTCTAAACCCAGCAACCCCTTACACTCCGAAATCGACGAACCCGAATCCCCAGACTCCGACCCAAAGCCCATCATCATTAGCAGCGTCGTCTGCTCGGCTGTGGAGGCCCACCGCGCAGCGCAACCTGAGAAACCAGTGGTCCAAGTTAGCTTCTTTGAGACAACAATGGGAGTCTGCTTCTTCTAGCGGAAGAGCACACGCCACTTTGCTCGTAAACTCCTACCTTTCCATCAAGTACATGCCTTCAAGGGAGTTGGGGGTTCTCAGCGACATGCCGGATATACTAAAGAAAGCTTCTCAGAAATTGCTTAAGCAGCAGGAACTTTATCGGAGCAAGCTTTTATCATCATACAAGGACATGGTGTCTGTTGTAACTAATATGGTCAAAACTAGTAGATCCATGAGATGCTTTGTCAAAGGGTTAACCAATAGTCCACTTTTACAATCTTCTGGCTATTCCGAATGTAATAATGACCCCGGAGATGGTGGTGGGATTCGAGTCTTCACATTTTGGTCGATCTCTTGCTTTGAGAAAGTGGCGGAGGAGCTTGTCCATATGCTTATATTGGAACTAAATTTGAAGCGTTTGCTTGTGGTGGACTTACTGTCAGTTAGTTGCAAAGTTCCAACGGCTAACGGTTTGCATTGGTCTGAAGAGCTATATCCAGGAGAATTTGGTGATTTGAGTATATGCAACTTATTATCTGAGGAAACTTGTAAACCAGTCTATCCAAGATTGCATGGTCAGAAATCTGATAAGCCAGCTATTGGACGTAATCAGCAGCCGGATCATGATGTTTTGCAGGTTTATCTAACAACATGGCTCATAGAGGTGAACATTGATACTGACAGGGTGGATGAAATATTTGCTGAAGTTGGGGAGGAAATACATTGTAGGCTTTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

323

Amino Acids

36.15

Weight (kDa)

8.06

Isoelectric Point (pI)

54.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002780)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07950
fragaria_vesca	FvH4_5g14050 FvH4_5g14050 FvH4_5g14050 FvH4_5g14050 FvH4_5g14150
malus_domestica	MD14G1210300.v1.1 MD17G1029400.v1.1
prunus_persica	Prupe.1G213800_v2.0.a1 Prupe.1G213800_v2.0.a1 Prupe.7G041400_v2.0.a1 Prupe.7G041400_v2.0.a1 Prupe.7G041400_v2.0.a1 Prupe.7G041400_v2.0.a1
pyrus_communis	pycom17g02660
rosa_chinensis	RchiOBHm_Chr4g0399581 RchiOBHm_Chr7g0182771
rosa_laevigata	RLG00000005101 RLG00000009261
rosa_multiflora	Rmu_co8503039.1_g000001 Rmu_sc0000014.1_g000030 Rmu_sc0002285.1_g000035 Rmu_sc0024464.1_g000001
rosa_roxburghii	Rroxscaffold_3G00270990 Rroxscaffold_5G00344490
rosa_rugosa	Rorug04G0017400 Rorug06G0450100 Rorug06G0450200 Rorug06G0450300
rosa_samantha	Rh4AG095300 Rh4BG092700 Rh4CG103800 Rh4DG087700 Rh7AG053900 Rh7BG053400 Rh7CG055000 Rh7DG053200
rosa_wichuraiana	Rw4G007840 Rw7G004390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	859
AccB7I	CCANNNNNTGG	1 cut(s)	833
AccII	CGCG	1 cut(s)	179
AciI	CCGC	3 cut(s)	177, 252, 605
AclWI	GGATC	2 cut(s)	456, 861
AcsI	RAATTY	2 cut(s)	640, 737
AcuI	CTGAAG	2 cut(s)	738, 957
AfaI	GTAC	2 cut(s)	55, 302
AfiI	CCNNNNNNNGG	2 cut(s)	548, 833
AflII	CTTAAG	1 cut(s)	374
AgsI	TTSAA	2 cut(s)	312, 646
AhdI	GACNNNNNGTC	2 cut(s)	427, 670
AhlI	ACTAGT	1 cut(s)	455
AjnI	CCWGG	1 cut(s)	730
AluBI	AGCT	8 cut(s)	44, 65, 215, 359, 403, 613, 724, 830
AluI	AGCT	8 cut(s)	44, 65, 215, 359, 403, 613, 724, 830
Alw21I	GWGCWC	1 cut(s)	262
Alw26I	GTCTC	1 cut(s)	217
AlwI	GGATC	2 cut(s)	456, 861
AoxI	GGCC	2 cut(s)	47, 170
ApeKI	GCWGC	4 cut(s)	146, 181, 379, 847
ApoI	RAATTY	2 cut(s)	640, 737
AspLEI	GCGC	2 cut(s)	181, 186
AspS9I	GGNCC	2 cut(s)	171, 204
AsuC2I	CCSGG	1 cut(s)	543
AsuHPI	GGTGA	2 cut(s)	755, 910
AvaII	GGWCC	1 cut(s)	204
BbsI	GAAGAC	1 cut(s)	559
Bbv12I	GWGCWC	1 cut(s)	262
BbvI	GCAGC	4 cut(s)	158, 193, 391, 859
BccI	CCATC	3 cut(s)	142, 302, 542
BceAI	ACGGC	1 cut(s)	711
BciT130I	CCWGG	1 cut(s)	732
BcnI	CCSGG	1 cut(s)	543
BcoDI	GTCTC	1 cut(s)	217
BcuI	ACTAGT	1 cut(s)	455
BfaI	CTAG	2 cut(s)	249, 456
BfrI	CTTAAG	1 cut(s)	374
BfuAI	ACCTGC	1 cut(s)	859
BisI	GCNGC	4 cut(s)	147, 182, 380, 848
BlsI	GCNGC	4 cut(s)	148, 183, 381, 849
Bme1390I	CCNGG	2 cut(s)	543, 732
Bme18I	GGWCC	1 cut(s)	204
BmeRI	GACNNNNNGTC	2 cut(s)	427, 670
BmgT120I	GGNCC	2 cut(s)	171, 204
BmrFI	CCNGG	2 cut(s)	543, 732
BmsI	GCATC	1 cut(s)	461
BpiI	GAAGAC	1 cut(s)	559
BpuMI	CCSGG	1 cut(s)	543
BsaJI	CCNNGG	1 cut(s)	541
Bsc4I	CCNNNNNNNGG	2 cut(s)	548, 833
Bse1I	ACTGG	2 cut(s)	199, 788
BseBI	CCWGG	1 cut(s)	732
BseDI	CCNNGG	1 cut(s)	541
BseGI	GGATG	1 cut(s)	928
BseLI	CCNNNNNNNGG	2 cut(s)	548, 833
BseMII	CTCAG	4 cut(s)	182, 343, 377, 762
BseNI	ACTGG	2 cut(s)	199, 788
BseRI	GAGGAG	1 cut(s)	623
BseXI	GCAGC	4 cut(s)	158, 193, 391, 859
BseYI	CCCAGC	1 cut(s)	73
Bsh1236I	CGCG	1 cut(s)	179
BshFI	GGCC	2 cut(s)	49, 172
BsiHKAI	GWGCWC	1 cut(s)	262
BsiSI	CCGG	3 cut(s)	341, 543, 851
BslI	CCNNNNNNNGG	2 cut(s)	548, 833
BsmAI	GTCTC	1 cut(s)	217
BsnI	GGCC	2 cut(s)	49, 172
Bsp1286I	GDGCHC	1 cut(s)	262
Bsp1407I	TGTACA	1 cut(s)	53
Bsp143I	GATC	3 cut(s)	461, 582, 853
BspACI	CCGC	3 cut(s)	177, 252, 605
BspANI	GGCC	2 cut(s)	49, 172
BspCNI	CTCAG	4 cut(s)	183, 342, 376, 763
BspFNI	CGCG	1 cut(s)	179
BspHI	TCATGA	2 cut(s)	856, 968
BspMI	ACCTGC	1 cut(s)	859
BspPI	GGATC	2 cut(s)	456, 861
BspQI	GCTCTTC	2 cut(s)	250, 714
BspTI	CTTAAG	1 cut(s)	374
BsrGI	TGTACA	1 cut(s)	53
BsrI	ACTGG	2 cut(s)	199, 788
BssECI	CCNNGG	1 cut(s)	541
BssMI	GATC	3 cut(s)	461, 582, 853
Bst2UI	CCWGG	1 cut(s)	732
Bst4CI	ACNGT	3 cut(s)	18, 672, 704
Bst6I	CTCTTC	2 cut(s)	250, 714
BstAFI	CTTAAG	1 cut(s)	374
BstAUI	TGTACA	1 cut(s)	53
BstC8I	GCNNGC	2 cut(s)	401, 828
BstDEI	CTNAG	5 cut(s)	40, 191, 329, 363, 771
BstF5I	GGATG	1 cut(s)	928
BstFNI	CGCG	1 cut(s)	179
BstHHI	GCGC	2 cut(s)	181, 186
BstKTI	GATC	3 cut(s)	464, 585, 856
BstMAI	GTCTC	1 cut(s)	217
BstMBI	GATC	3 cut(s)	461, 582, 853
BstMWI	GCNNNNNNNGC	4 cut(s)	155, 169, 178, 379
BstNI	CCWGG	1 cut(s)	732
BstNSI	RCATGY	2 cut(s)	307, 340
BstSCI	CCNGG	2 cut(s)	541, 730
BstUI	CGCG	1 cut(s)	179
BstV1I	GCAGC	4 cut(s)	158, 193, 391, 859
BstV2I	GAAGAC	1 cut(s)	559
BstX2I	RGATCY	1 cut(s)	461
BstYI	RGATCY	1 cut(s)	461
BsuRI	GGCC	2 cut(s)	49, 172
BtsCI	GGATG	1 cut(s)	928
BtsIMutI	CAGTG	1 cut(s)	206
BveI	ACCTGC	1 cut(s)	859
Cac8I	GCNNGC	2 cut(s)	401, 828
CciI	TCATGA	2 cut(s)	856, 968
CfoI	GCGC	2 cut(s)	181, 186
Cfr13I	GGNCC	2 cut(s)	171, 204
CseI	GACGC	1 cut(s)	138
Csp6I	GTAC	2 cut(s)	54, 301
CviAII	CATG	8 cut(s)	304, 337, 424, 466, 806, 857, 885, 969
CviQI	GTAC	2 cut(s)	54, 301
DdeI	CTNAG	5 cut(s)	40, 191, 329, 363, 771
DpnI	GATC	3 cut(s)	463, 584, 855
DpnII	GATC	3 cut(s)	461, 582, 853
DriI	GACNNNNNGTC	2 cut(s)	427, 670
Eam1104I	CTCTTC	2 cut(s)	250, 714
Eam1105I	GACNNNNNGTC	2 cut(s)	427, 670
EarI	CTCTTC	2 cut(s)	250, 714
EciI	GGCGGA	1 cut(s)	620
Eco47I	GGWCC	1 cut(s)	204
Eco57I	CTGAAG	2 cut(s)	738, 957
EcoRII	CCWGG	1 cut(s)	730
FaeI	CATG	8 cut(s)	307, 340, 427, 469, 809, 860, 888, 972
FatI	CATG	8 cut(s)	303, 336, 423, 465, 805, 856, 884, 968
FauNDI	CATATG	1 cut(s)	621
Fnu4HI	GCNGC	4 cut(s)	147, 182, 380, 848
FokI	GGATG	1 cut(s)	935
Fsp4HI	GCNGC	4 cut(s)	147, 182, 380, 848
FspBI	CTAG	2 cut(s)	249, 456
GlaI	GCGC	2 cut(s)	180, 185
GluI	GCNGC	4 cut(s)	147, 182, 380, 848
GsaI	CCCAGC	1 cut(s)	77
HaeIII	GGCC	2 cut(s)	49, 172
HapII	CCGG	3 cut(s)	341, 543, 851
HgaI	GACGC	1 cut(s)	138
HhaI	GCGC	2 cut(s)	181, 186
Hin1II	CATG	8 cut(s)	307, 340, 427, 469, 809, 860, 888, 972
Hin6I	GCGC	2 cut(s)	179, 184
HinP1I	GCGC	2 cut(s)	179, 184
HincII	GTYRAC	1 cut(s)	489
HindII	GTYRAC	1 cut(s)	489
HindIII	AAGCTT	2 cut(s)	357, 401
HinfI	GANTC	5 cut(s)	109, 118, 236, 559, 564
HpaI	GTTAAC	1 cut(s)	489
HpaII	CCGG	3 cut(s)	341, 543, 851
HphI	GGTGA	2 cut(s)	755, 910
Hpy166II	GTNNAC	6 cut(s)	280, 489, 500, 664, 785, 901
Hpy188I	TCNGA	9 cut(s)	93, 123, 366, 396, 526, 718, 772, 813, 820
Hpy188III	TCNNGA	2 cut(s)	857, 969
Hpy8I	GTNNAC	6 cut(s)	280, 489, 500, 664, 785, 901
Hpy99I	CGWCG	2 cut(s)	103, 154
HpyAV	CCTTC	1 cut(s)	318
HpyCH4III	ACNGT	3 cut(s)	18, 672, 704
HpyCH4IV	ACGT	1 cut(s)	838
HpyCH4V	TGCA	5 cut(s)	684, 709, 759, 805, 868
HpyF10VI	GCNNNNNNNGC	4 cut(s)	155, 169, 178, 379
HpyF3I	CTNAG	5 cut(s)	40, 191, 329, 363, 771
HpySE526I	ACGT	1 cut(s)	838
Hsp92II	CATG	8 cut(s)	307, 340, 427, 469, 809, 860, 888, 972
HspAI	GCGC	2 cut(s)	179, 184
KspAI	GTTAAC	1 cut(s)	489
Kzo9I	GATC	3 cut(s)	461, 582, 853
LguI	GCTCTTC	2 cut(s)	250, 714
LmnI	GCTCC	2 cut(s)	396, 610
Lsp1109I	GCAGC	4 cut(s)	158, 193, 391, 859
LweI	GCATC	1 cut(s)	461
MaeI	CTAG	2 cut(s)	249, 456
MaeII	ACGT	1 cut(s)	838
MaeIII	GTNAC	1 cut(s)	436
MalI	GATC	3 cut(s)	463, 584, 855
MboI	GATC	3 cut(s)	461, 582, 853
MboII	GAAGA	7 cut(s)	3, 18, 237, 267, 504, 559, 731
MflI	RGATCY	1 cut(s)	461
MhlI	GDGCHC	1 cut(s)	262
MluCI	AATT	4 cut(s)	33, 368, 640, 737
MlyI	GAGTC	3 cut(s)	112, 245, 573
MmeI	TCCRAC	2 cut(s)	146, 716
MnlI	CCTC	5 cut(s)	162, 601, 766, 889, 940
MseI	TTAA	2 cut(s)	375, 488
MslI	CAYNNNNRTG	1 cut(s)	896
MspCI	CTTAAG	1 cut(s)	374
MspI	CCGG	3 cut(s)	341, 543, 851
MspR9I	CCNGG	2 cut(s)	543, 732
MteI	GCGCNGCGC	1 cut(s)	182
MvaI	CCWGG	1 cut(s)	732
MvnI	CGCG	1 cut(s)	179
MwoI	GCNNNNNNNGC	4 cut(s)	155, 169, 178, 379
NciI	CCSGG	1 cut(s)	543
NdeI	CATATG	1 cut(s)	621
NdeII	GATC	3 cut(s)	461, 582, 853
NlaIII	CATG	8 cut(s)	307, 340, 427, 469, 809, 860, 888, 972
NmeAIII	GCCGAG	2 cut(s)	25, 139
NspI	RCATGY	2 cut(s)	307, 340
PagI	TCATGA	2 cut(s)	856, 968
PciSI	GCTCTTC	2 cut(s)	250, 714
PcsI	WCGNNNNNNNCGW	1 cut(s)	104
PfeI	GAWTC	2 cut(s)	109, 559
PflMI	CCANNNNNTGG	1 cut(s)	833
PfoI	TCCNGGA	1 cut(s)	730
PkrI	GCNGC	4 cut(s)	148, 183, 381, 849
PleI	GAGTC	3 cut(s)	112, 244, 572
PpsI	GAGTC	3 cut(s)	112, 244, 572
Psp6I	CCWGG	1 cut(s)	730
PspFI	CCCAGC	1 cut(s)	73
PspGI	CCWGG	1 cut(s)	730
PspPI	GGNCC	2 cut(s)	171, 204
PsuI	RGATCY	1 cut(s)	461
RsaI	GTAC	2 cut(s)	55, 302
RsaNI	GTAC	2 cut(s)	54, 301
RseI	CAYNNNNRTG	1 cut(s)	896
SapI	GCTCTTC	2 cut(s)	250, 714
SaqAI	TTAA	2 cut(s)	375, 488
SatI	GCNGC	4 cut(s)	147, 182, 380, 848
Sau3AI	GATC	3 cut(s)	461, 582, 853
Sau96I	GGNCC	2 cut(s)	171, 204
SchI	GAGTC	3 cut(s)	112, 245, 573
ScrFI	CCNGG	2 cut(s)	543, 732
SduI	GDGCHC	1 cut(s)	262
SfaNI	GCATC	1 cut(s)	461
SinI	GGWCC	1 cut(s)	204
SmiMI	CAYNNNNRTG	1 cut(s)	896
SmlI	CTYRAG	1 cut(s)	374
SmoI	CTYRAG	1 cut(s)	374
SpeI	ACTAGT	1 cut(s)	455
Sse9I	AATT	4 cut(s)	33, 368, 640, 737
SsiI	CCGC	3 cut(s)	177, 252, 605
SspI	AATATT	1 cut(s)	930
SspMI	CTAG	2 cut(s)	249, 456
StyD4I	CCNGG	2 cut(s)	541, 730
TaaI	ACNGT	3 cut(s)	18, 672, 704
TaiI	ACGT	1 cut(s)	841
TaqI	TCGA	3 cut(s)	98, 562, 581
TasI	AATT	4 cut(s)	33, 368, 640, 737
TatI	WGTACW	2 cut(s)	53, 300
TfiI	GAWTC	2 cut(s)	109, 559
Tru1I	TTAA	2 cut(s)	375, 488
Tru9I	TTAA	2 cut(s)	375, 488
TscAI	CASTG	1 cut(s)	206
TseI	GCWGC	4 cut(s)	146, 181, 379, 847
TspDTI	ATGAA	2 cut(s)	939, 957
TspRI	CASTG	1 cut(s)	206
Van91I	CCANNNNNTGG	1 cut(s)	833
Vha464I	CTTAAG	1 cut(s)	374
VpaK11BI	GGWCC	1 cut(s)	204
XapI	RAATTY	2 cut(s)	640, 737
XceI	RCATGY	2 cut(s)	307, 340
XspI	CTAG	2 cut(s)	249, 456

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.