Rorug06G0450100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0002780
Physical Location & Seq
Reverse (-)
57981215 .. 57982266
1052 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0450100.1

Sequence Viewer

Length: 753 bp
ATGGCTCATAATAAAGCAGCATATGATCACTGGCTTATCATGCTGTGTGTTTTAGTATTTGCTAGTTCATCATGTTCTGCTACTGAAGGTGACACACTCATCAAGTTCAAGACTTCTCTATCCGATACCTGGGCACTAGATAACTGGAATTCTTCTACAAAACCCTGCAACGGTTTCACGAGCCATTGGGCGGGTGTGCTTTGTAACGGCGGGAGCGTATTCGGGCTGCAGCTGCAGAACATGGGCCTAACTGGCCTGATTGACATTGACACGCTCTCAGAGTTGCCGGCCCTCAAGACCATAAGCTTCATGAACAACGGCTTTGGAGGTCCACTGCCCGATGTGAAGAGACTTTCACTCATTAGTGTCTACTTATCCCAGAACCAATTCTCTGGTGATATCCCGGATGATGCTTTCAGTGGCATGGGTGATACCTTGAAGAAAGTTTACTTGGCCAAAAATGGATTTACGGGGAAGATACCGAGTTCTTTGGTTGATTTGCCTAAGCTCATTGAGTTGGACCTTGGGGATAACCAGTTTAGTGGGAAGATACCAAATTTTCAACCAAGGAACTGGACGTTGTTAAATCTGGCAAACAACAGATTGGATGGTCGGATTCCGGCATCACTAAGCAATTTAGATGCCGCCGATTTTCAGGGAAACGGTGGCTTGTGTGGAAAGCCTCTTAGCCCGTGCAAATCCGTAAAGAAGGAAGGAAGTGACGGTCGAAGAAATGGAGCAGTGAATCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

250

Amino Acids

26.83

Weight (kDa)

6.81

Isoelectric Point (pI)

16.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRRNT_2 PF08263 27 - 69 3.7e-07 Leucine rich repeat N-terminal domain
LRR_8 PF13855 120 - 180 5.1e-06 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 369
AciI CCGC 3 cut(s) 191, 210, 645
AcoI YGGCCR 1 cut(s) 453
AcsI RAATTY 2 cut(s) 148, 556
AcuI CTGAAG 1 cut(s) 105
AfiI CCNNNNNNNGG 3 cut(s) 129, 170, 190
AgsI TTSAA 3 cut(s) 109, 439, 563
AjnI CCWGG 1 cut(s) 128
AjuI GAANNNNNNNTTGG 2 cut(s) 434, 466
AluBI AGCT 3 cut(s) 232, 306, 508
AluI AGCT 3 cut(s) 232, 306, 508
Alw26I GTCTC 1 cut(s) 343
AoxI GGCC 4 cut(s) 244, 253, 288, 453
ApeKI GCWGC 4 cut(s) 17, 226, 229, 232
ApoI RAATTY 2 cut(s) 148, 556
Asp700I GAANNNNTTC 1 cut(s) 386
AspS9I GGNCC 4 cut(s) 244, 289, 329, 520
AsuC2I CCSGG 1 cut(s) 404
AsuHPI GGTGA 3 cut(s) 101, 407, 440
AvaII GGWCC 2 cut(s) 329, 520
BaeGI GKGCMC 1 cut(s) 136
BalI TGGCCA 1 cut(s) 455
BarI GAAGNNNNNNTAC 2 cut(s) 431, 463
BauI CACGAG 1 cut(s) 178
BbvI GCAGC 4 cut(s) 29, 213, 219, 241
BccI CCATC 1 cut(s) 602
BceAI ACGGC 2 cut(s) 223, 334
BciT130I CCWGG 1 cut(s) 130
BclI TGATCA 1 cut(s) 25
BcnI CCSGG 1 cut(s) 404
BcoDI GTCTC 1 cut(s) 343
BfaI CTAG 2 cut(s) 63, 137
BfmI CTRYAG 2 cut(s) 227, 233
BglI GCCNNNNNGGC 1 cut(s) 252
BisI GCNGC 5 cut(s) 18, 227, 230, 233, 645
BlsI GCNGC 5 cut(s) 19, 228, 231, 234, 646
Bme1390I CCNGG 2 cut(s) 130, 404
Bme18I GGWCC 2 cut(s) 329, 520
BmgT120I GGNCC 4 cut(s) 244, 289, 329, 520
BmrFI CCNGG 2 cut(s) 130, 404
BmsI GCATC 3 cut(s) 400, 631, 632
Bpu10I CCTNAGC 1 cut(s) 504
BpuEI CTTGAG 1 cut(s) 278
BpuMI CCSGG 1 cut(s) 404
BsaJI CCNNGG 3 cut(s) 129, 523, 566
Bsc4I CCNNNNNNNGG 3 cut(s) 129, 170, 190
Bse118I RCCGGY 1 cut(s) 286
Bse1I ACTGG 5 cut(s) 35, 149, 256, 535, 578
BseBI CCWGG 1 cut(s) 130
BseDI CCNNGG 3 cut(s) 129, 523, 566
BseGI GGATG 2 cut(s) 412, 613
BseLI CCNNNNNNNGG 3 cut(s) 129, 170, 190
BseMII CTCAG 1 cut(s) 291
BseNI ACTGG 5 cut(s) 35, 149, 256, 535, 578
BseSI GKGCMC 1 cut(s) 136
BseXI GCAGC 4 cut(s) 29, 213, 219, 241
Bsh1285I CGRYCG 1 cut(s) 727
BshFI GGCC 4 cut(s) 246, 255, 290, 455
BsiEI CGRYCG 1 cut(s) 727
BsiSI CCGG 3 cut(s) 287, 404, 620
BslI CCNNNNNNNGG 3 cut(s) 129, 170, 190
BsmAI GTCTC 1 cut(s) 343
BsnI GGCC 4 cut(s) 246, 255, 290, 455
Bsp1286I GDGCHC 1 cut(s) 136
Bsp143I GATC 1 cut(s) 25
BspACI CCGC 3 cut(s) 191, 210, 645
BspANI GGCC 4 cut(s) 246, 255, 290, 455
BspCNI CTCAG 1 cut(s) 290
BspHI TCATGA 1 cut(s) 309
BspMAI CTGCAG 2 cut(s) 231, 237
BsrFI RCCGGY 1 cut(s) 286
BsrI ACTGG 5 cut(s) 35, 149, 256, 535, 578
BssAI RCCGGY 1 cut(s) 286
BssECI CCNNGG 3 cut(s) 129, 523, 566
BssMI GATC 1 cut(s) 25
BssSI CACGAG 1 cut(s) 178
BssT1I CCWWGG 2 cut(s) 523, 566
Bst2BI CACGAG 1 cut(s) 178
Bst2UI CCWGG 1 cut(s) 130
Bst4CI ACNGT 3 cut(s) 173, 665, 725
Bst6I CTCTTC 1 cut(s) 341
BstC8I GCNNGC 1 cut(s) 288
BstDEI CTNAG 4 cut(s) 277, 504, 629, 686
BstF5I GGATG 2 cut(s) 412, 613
BstKTI GATC 1 cut(s) 28
BstMAI GTCTC 1 cut(s) 343
BstMBI GATC 1 cut(s) 25
BstMCI CGRYCG 1 cut(s) 727
BstMWI GCNNNNNNNGC 3 cut(s) 40, 232, 252
BstNI CCWGG 1 cut(s) 130
BstSCI CCNGG 2 cut(s) 128, 402
BstSFI CTRYAG 2 cut(s) 227, 233
BstSLI GKGCMC 1 cut(s) 136
BstV1I GCAGC 4 cut(s) 29, 213, 219, 241
BstXI CCANNNNNNTGG 3 cut(s) 392, 542, 573
BsuRI GGCC 4 cut(s) 246, 255, 290, 455
BtsCI GGATG 2 cut(s) 412, 613
BtsI GCAGTG 2 cut(s) 332, 747
BtsIMutI CAGTG 4 cut(s) 28, 332, 424, 747
Cac8I GCNNGC 1 cut(s) 288
CciI TCATGA 1 cut(s) 309
Cfr10I RCCGGY 1 cut(s) 286
Cfr13I GGNCC 4 cut(s) 244, 289, 329, 520
CviAII CATG 5 cut(s) 40, 72, 241, 310, 424
DdeI CTNAG 4 cut(s) 277, 504, 629, 686
DpnI GATC 1 cut(s) 27
DpnII GATC 1 cut(s) 25
EaeI YGGCCR 1 cut(s) 453
Eam1104I CTCTTC 1 cut(s) 341
EarI CTCTTC 1 cut(s) 341
Eco130I CCWWGG 2 cut(s) 523, 566
Eco32I GATATC 1 cut(s) 400
Eco47I GGWCC 2 cut(s) 329, 520
Eco57I CTGAAG 1 cut(s) 105
EcoRI GAATTC 1 cut(s) 148
EcoRII CCWGG 1 cut(s) 128
EcoRV GATATC 1 cut(s) 400
EcoT14I CCWWGG 2 cut(s) 523, 566
ErhI CCWWGG 2 cut(s) 523, 566
FaeI CATG 5 cut(s) 43, 75, 244, 313, 427
FaiI YATR 9 cut(s) 9, 22, 24, 41, 73, 242, 302, 311, 425
FatI CATG 5 cut(s) 39, 71, 240, 309, 423
FauI CCCGC 2 cut(s) 184, 203
FauNDI CATATG 1 cut(s) 22
FbaI TGATCA 1 cut(s) 25
FblI GTMKAC 1 cut(s) 369
Fnu4HI GCNGC 5 cut(s) 18, 227, 230, 233, 645
FokI GGATG 2 cut(s) 419, 620
Fsp4HI GCNGC 5 cut(s) 18, 227, 230, 233, 645
FspBI CTAG 2 cut(s) 63, 137
GluI GCNGC 5 cut(s) 18, 227, 230, 233, 645
HaeIII GGCC 4 cut(s) 246, 255, 290, 455
HapII CCGG 3 cut(s) 287, 404, 620
Hin1II CATG 5 cut(s) 43, 75, 244, 313, 427
HindIII AAGCTT 1 cut(s) 304
HinfI GANTC 2 cut(s) 616, 745
HpaII CCGG 3 cut(s) 287, 404, 620
HphI GGTGA 3 cut(s) 101, 407, 440
Hpy166II GTNNAC 3 cut(s) 332, 370, 448
Hpy188I TCNGA 3 cut(s) 124, 280, 615
Hpy188III TCNNGA 4 cut(s) 109, 178, 295, 310
Hpy8I GTNNAC 3 cut(s) 332, 370, 448
HpyAV CCTTC 3 cut(s) 80, 703, 707
HpyCH4III ACNGT 3 cut(s) 173, 665, 725
HpyCH4IV ACGT 1 cut(s) 578
HpyCH4V TGCA 4 cut(s) 168, 229, 235, 696
HpyF10VI GCNNNNNNNGC 3 cut(s) 40, 232, 252
HpyF3I CTNAG 4 cut(s) 277, 504, 629, 686
HpySE526I ACGT 1 cut(s) 578
Hsp92II CATG 5 cut(s) 43, 75, 244, 313, 427
KroI GCCGGC 1 cut(s) 286
KroNI GCCGGC 1 cut(s) 288
Ksp22I TGATCA 1 cut(s) 25
Kzo9I GATC 1 cut(s) 25
LmnI GCTCC 2 cut(s) 213, 737
Lsp1109I GCAGC 4 cut(s) 29, 213, 219, 241
LweI GCATC 3 cut(s) 400, 631, 632
MaeI CTAG 2 cut(s) 63, 137
MaeII ACGT 1 cut(s) 578
MaeIII GTNAC 3 cut(s) 89, 203, 719
MalI GATC 1 cut(s) 27
MboI GATC 1 cut(s) 25
MboII GAAGA 6 cut(s) 144, 358, 451, 487, 559, 741
MhlI GDGCHC 1 cut(s) 136
MlsI TGGCCA 1 cut(s) 455
MluCI AATT 4 cut(s) 148, 386, 556, 634
MluNI TGGCCA 1 cut(s) 455
MmeI TCCRAC 2 cut(s) 498, 593
MnlI CCTC 3 cut(s) 302, 320, 693
Mox20I TGGCCA 1 cut(s) 455
MroNI GCCGGC 1 cut(s) 286
MroXI GAANNNNTTC 1 cut(s) 386
MscI TGGCCA 1 cut(s) 455
MseI TTAA 2 cut(s) 584, 751
Msp20I TGGCCA 1 cut(s) 455
MspA1I CMGCKG 1 cut(s) 232
MspI CCGG 3 cut(s) 287, 404, 620
MspR9I CCNGG 2 cut(s) 130, 404
MvaI CCWGG 1 cut(s) 130
MwoI GCNNNNNNNGC 3 cut(s) 40, 232, 252
NaeI GCCGGC 1 cut(s) 288
NciI CCSGG 1 cut(s) 404
NdeI CATATG 1 cut(s) 22
NdeII GATC 1 cut(s) 25
NgoMIV GCCGGC 1 cut(s) 286
NlaIII CATG 5 cut(s) 43, 75, 244, 313, 427
NmuCI GTSAC 2 cut(s) 89, 719
PagI TCATGA 1 cut(s) 309
PcsI WCGNNNNNNNCGW 1 cut(s) 213
PdiI GCCGGC 1 cut(s) 288
PdmI GAANNNNTTC 1 cut(s) 386
PfeI GAWTC 2 cut(s) 616, 745
PfoI TCCNGGA 1 cut(s) 402
PkrI GCNGC 5 cut(s) 19, 228, 231, 234, 646
Psp6I CCWGG 1 cut(s) 128
PspGI CCWGG 1 cut(s) 128
PspPI GGNCC 4 cut(s) 244, 289, 329, 520
PstI CTGCAG 2 cut(s) 231, 237
PvuII CAGCTG 1 cut(s) 232
SaqAI TTAA 2 cut(s) 584, 751
SatI GCNGC 5 cut(s) 18, 227, 230, 233, 645
Sau3AI GATC 1 cut(s) 25
Sau96I GGNCC 4 cut(s) 244, 289, 329, 520
ScrFI CCNGG 2 cut(s) 130, 404
SduI GDGCHC 1 cut(s) 136
SetI ASST 9 cut(s) 91, 131, 234, 308, 331, 437, 510, 525, 581
SfaNI GCATC 3 cut(s) 400, 631, 632
SfcI CTRYAG 2 cut(s) 227, 233
SfiI GGCCNNNNNGGCC 1 cut(s) 252
SinI GGWCC 2 cut(s) 329, 520
SmlI CTYRAG 1 cut(s) 293
SmoI CTYRAG 1 cut(s) 293
Sse9I AATT 4 cut(s) 148, 386, 556, 634
SsiI CCGC 3 cut(s) 191, 210, 645
SspMI CTAG 2 cut(s) 63, 137
StyD4I CCNGG 2 cut(s) 128, 402
StyI CCWWGG 2 cut(s) 523, 566
TaaI ACNGT 3 cut(s) 173, 665, 725
TaiI ACGT 1 cut(s) 581
TaqI TCGA 1 cut(s) 727
TasI AATT 4 cut(s) 148, 386, 556, 634
TauI GCSGC 1 cut(s) 647
TfiI GAWTC 2 cut(s) 616, 745
Tru1I TTAA 2 cut(s) 584, 751
Tru9I TTAA 2 cut(s) 584, 751
TscAI CASTG 4 cut(s) 35, 339, 424, 747
TseFI GTSAC 2 cut(s) 89, 719
TseI GCWGC 4 cut(s) 17, 226, 229, 232
Tsp45I GTSAC 2 cut(s) 89, 719
TspDTI ATGAA 3 cut(s) 57, 298, 326
TspGWI ACGGA 1 cut(s) 691
TspRI CASTG 4 cut(s) 35, 339, 424, 747
VpaK11BI GGWCC 2 cut(s) 329, 520
XapI RAATTY 2 cut(s) 148, 556
XmiI GTMKAC 1 cut(s) 369
XmnI GAANNNNTTC 1 cut(s) 386
XspI CTAG 2 cut(s) 63, 137
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.