Rroxscaffold_5G00344490

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0002780
Physical Location & Seq
Reverse (-)
14593994 .. 14597269
3276 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00344490.1

Sequence Viewer

Length: 351 bp
ATGCTTATATTGGAACTAAATTTGAAGCGTTTGCTTGTGGTGGACTTACTGTCAGTTAGTTGCAAAGTTCCAACGGCTAACAGTTTGCATTGGTCTGAAGAACTATATCCAGGAGAATTTGGTGATTTGAGTATATGCAACTTATTATCTGAGGACACTTGTAAACCAGTCTATGCAAGATTGCATGGTCAGAAATCTGATAAGCCAGCTATTGGACGTAATCAGCAGCCGGATCATGATGTTTTGCAGGTTTATCTAACAACATGGCCCATAGAGGTGAACATTGATACTGACAGGGTGGATGAAATATTTGCTGAAGTTGGGGAGGAAATACATTGTAGGCTTTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

116

Amino Acids

13.16

Weight (kDa)

4.71

Isoelectric Point (pI)

37.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 238
AccB7I CCANNNNNTGG 1 cut(s) 212
AclWI GGATC 1 cut(s) 240
AcsI RAATTY 2 cut(s) 19, 116
AcuI CTGAAG 2 cut(s) 117, 336
AfiI CCNNNNNNNGG 1 cut(s) 212
AgsI TTSAA 1 cut(s) 25
AhdI GACNNNNNGTC 1 cut(s) 49
AjnI CCWGG 1 cut(s) 109
AluBI AGCT 1 cut(s) 209
AluI AGCT 1 cut(s) 209
AlwI GGATC 1 cut(s) 240
AoxI GGCC 1 cut(s) 266
ApeKI GCWGC 1 cut(s) 226
ApoI RAATTY 2 cut(s) 19, 116
AspS9I GGNCC 1 cut(s) 267
AsuHPI GGTGA 2 cut(s) 134, 289
BbvI GCAGC 1 cut(s) 238
BceAI ACGGC 1 cut(s) 90
BciT130I CCWGG 1 cut(s) 111
BfuAI ACCTGC 1 cut(s) 238
BisI GCNGC 1 cut(s) 227
BlsI GCNGC 1 cut(s) 228
Bme1390I CCNGG 1 cut(s) 111
BmeRI GACNNNNNGTC 1 cut(s) 49
BmgT120I GGNCC 1 cut(s) 267
BmrFI CCNGG 1 cut(s) 111
Bsc4I CCNNNNNNNGG 1 cut(s) 212
Bse1I ACTGG 1 cut(s) 167
BseBI CCWGG 1 cut(s) 111
BseGI GGATG 1 cut(s) 307
BseLI CCNNNNNNNGG 1 cut(s) 212
BseMII CTCAG 1 cut(s) 141
BseNI ACTGG 1 cut(s) 167
BseXI GCAGC 1 cut(s) 238
BshFI GGCC 1 cut(s) 268
BsiSI CCGG 1 cut(s) 230
BslI CCNNNNNNNGG 1 cut(s) 212
BsnI GGCC 1 cut(s) 268
Bsp143I GATC 1 cut(s) 232
BspANI GGCC 1 cut(s) 268
BspCNI CTCAG 1 cut(s) 142
BspHI TCATGA 2 cut(s) 235, 347
BspMI ACCTGC 1 cut(s) 238
BspPI GGATC 1 cut(s) 240
BsrI ACTGG 1 cut(s) 167
BssMI GATC 1 cut(s) 232
Bst2UI CCWGG 1 cut(s) 111
Bst4CI ACNGT 2 cut(s) 51, 83
BstC8I GCNNGC 1 cut(s) 207
BstDEI CTNAG 1 cut(s) 150
BstF5I GGATG 1 cut(s) 307
BstKTI GATC 1 cut(s) 235
BstMBI GATC 1 cut(s) 232
BstNI CCWGG 1 cut(s) 111
BstSCI CCNGG 1 cut(s) 109
BstV1I GCAGC 1 cut(s) 238
BsuRI GGCC 1 cut(s) 268
BtsCI GGATG 1 cut(s) 307
BveI ACCTGC 1 cut(s) 238
Cac8I GCNNGC 1 cut(s) 207
CciI TCATGA 2 cut(s) 235, 347
Cfr13I GGNCC 1 cut(s) 267
CviAII CATG 4 cut(s) 185, 236, 264, 348
CviJI RGCY 6 cut(s) 77, 205, 209, 229, 268, 343
CviKI_1 RGCY 6 cut(s) 77, 205, 209, 229, 268, 343
DdeI CTNAG 1 cut(s) 150
DpnI GATC 1 cut(s) 234
DpnII GATC 1 cut(s) 232
DriI GACNNNNNGTC 1 cut(s) 49
Eam1105I GACNNNNNGTC 1 cut(s) 49
Eco57I CTGAAG 2 cut(s) 117, 336
EcoRII CCWGG 1 cut(s) 109
FaeI CATG 4 cut(s) 188, 239, 267, 351
FatI CATG 4 cut(s) 184, 235, 263, 347
Fnu4HI GCNGC 1 cut(s) 227
FokI GGATG 1 cut(s) 314
Fsp4HI GCNGC 1 cut(s) 227
GluI GCNGC 1 cut(s) 227
HaeIII GGCC 1 cut(s) 268
HapII CCGG 1 cut(s) 230
Hin1II CATG 4 cut(s) 188, 239, 267, 351
HpaII CCGG 1 cut(s) 230
HphI GGTGA 2 cut(s) 134, 289
Hpy166II GTNNAC 3 cut(s) 43, 164, 280
Hpy188I TCNGA 4 cut(s) 97, 151, 192, 199
Hpy188III TCNNGA 2 cut(s) 236, 348
Hpy8I GTNNAC 3 cut(s) 43, 164, 280
HpyCH4III ACNGT 2 cut(s) 51, 83
HpyCH4IV ACGT 1 cut(s) 217
HpyCH4V TGCA 6 cut(s) 63, 88, 138, 176, 184, 247
HpyF3I CTNAG 1 cut(s) 150
HpySE526I ACGT 1 cut(s) 217
Hsp92II CATG 4 cut(s) 188, 239, 267, 351
Kzo9I GATC 1 cut(s) 232
LpnPI CCDG 7 cut(s) 96, 123, 180, 219, 233, 243, 280
Lsp1109I GCAGC 1 cut(s) 238
MaeII ACGT 1 cut(s) 217
MalI GATC 1 cut(s) 234
MboI GATC 1 cut(s) 232
MboII GAAGA 1 cut(s) 110
MluCI AATT 2 cut(s) 19, 116
MmeI TCCRAC 1 cut(s) 95
MnlI CCTC 3 cut(s) 145, 268, 319
MslI CAYNNNNRTG 1 cut(s) 275
MspI CCGG 1 cut(s) 230
MspR9I CCNGG 1 cut(s) 111
MvaI CCWGG 1 cut(s) 111
NdeII GATC 1 cut(s) 232
NlaIII CATG 4 cut(s) 188, 239, 267, 351
PagI TCATGA 2 cut(s) 235, 347
PflMI CCANNNNNTGG 1 cut(s) 212
PfoI TCCNGGA 1 cut(s) 109
PkrI GCNGC 1 cut(s) 228
Psp6I CCWGG 1 cut(s) 109
PspGI CCWGG 1 cut(s) 109
PspPI GGNCC 1 cut(s) 267
RseI CAYNNNNRTG 1 cut(s) 275
SatI GCNGC 1 cut(s) 227
Sau3AI GATC 1 cut(s) 232
Sau96I GGNCC 1 cut(s) 267
ScrFI CCNGG 1 cut(s) 111
SetI ASST 4 cut(s) 211, 220, 252, 279
SmiMI CAYNNNNRTG 1 cut(s) 275
Sse9I AATT 2 cut(s) 19, 116
SspI AATATT 1 cut(s) 309
StyD4I CCNGG 1 cut(s) 109
TaaI ACNGT 2 cut(s) 51, 83
TaiI ACGT 1 cut(s) 220
TasI AATT 2 cut(s) 19, 116
TseI GCWGC 1 cut(s) 226
TspDTI ATGAA 2 cut(s) 318, 336
Van91I CCANNNNNTGG 1 cut(s) 212
XapI RAATTY 2 cut(s) 19, 116
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.