Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0002780

Physical Location & Seq

Genomic Coordinates Reverse (-)

2125158 .. 2128369

Gene Structure 3212 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1029400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 960 bp

ATGGCGAATCCAGCTGAAAACCCAGCAATGGAAACTCCATGCCCAGCAACTCCTTCTTCTTCTTCTTATTCCTCTCCTTATACTCCAAAACCAGAGAACCCAGCACCCCAAAGCCCCTCACCGTCACCGGCACTAGCATCAACGGCGAGGCTGTGGAGGCCCACCGCGCAGAGAAACCTGAGAAATCAATGGCCCAAGTTAGCTTCTTACAGACAGCAATGGGCTTCTTCTTCTTCCACTGCAAGATCACACGCCACCTCTCTCGTAAACTCGTATCTTTCTCTCAAATACATGCCTTCAATGGAGTTGGGAGTTCTGAGTGATATGCCTAATATACGAAAGAAAGCTTGCCATAAATTATTTAAGCGGCAGGAGCTTCATCGAAGCGGACTTTTATCGTCGTACAAGGACATGGTTTCAGTTGTAACTCACATGGTCCAAACTAGTAGATCCATGAGATGCTTTGTCAAGGGGGCAACCAATAATCCACTCGTACAATCTTCTGGCTGTTCTGAAGATAAGAATGATCCCGGATATGGTGGCGGAATTCCAGTCTTTGCATTTTGGTCCATCTCTTGCTTTGAAAAACTGGCGGAGGAGCTTGTCCAGATGTTTATATTGGAGCTAAATTTGAAGCGTTTGGTTGTAGTGGAATTACTTTCAATTAGTTGTGACGTTCCAACAGTAAACAGTTTGGATTGGTCGGATGAGCTTTATCCGGGAGAATTTGGTGAGTTGAGTATATGCAACTTATATGGTGAGGAGACTTGTAAGCCAATCTATCCAAGATTGGATGATCAGAAATTCGAAATGCCAGCTGCACGATGTAATCAGCAGCCAGATCATGATGTTTTGCAGGTTTATCTAACGACGTGGATTGCAGAGGTGAATATAGATGCTCACAGGGTGGATGAAATATTTGCCGAAGTTGGGGAGGAAATGCATGTTAGGATTTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

320

Amino Acids

35.7

Weight (kDa)

5.85

Isoelectric Point (pI)

59.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002780)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07950
fragaria_vesca	FvH4_5g14050 FvH4_5g14050 FvH4_5g14050 FvH4_5g14050 FvH4_5g14150
malus_domestica	MD14G1210300.v1.1 MD17G1029400.v1.1
prunus_persica	Prupe.1G213800_v2.0.a1 Prupe.1G213800_v2.0.a1 Prupe.7G041400_v2.0.a1 Prupe.7G041400_v2.0.a1 Prupe.7G041400_v2.0.a1 Prupe.7G041400_v2.0.a1
pyrus_communis	pycom17g02660
rosa_chinensis	RchiOBHm_Chr4g0399581 RchiOBHm_Chr7g0182771
rosa_laevigata	RLG00000005101 RLG00000009261
rosa_multiflora	Rmu_co8503039.1_g000001 Rmu_sc0000014.1_g000030 Rmu_sc0002285.1_g000035 Rmu_sc0024464.1_g000001
rosa_roxburghii	Rroxscaffold_3G00270990 Rroxscaffold_5G00344490
rosa_rugosa	Rorug04G0017400 Rorug06G0450100 Rorug06G0450200 Rorug06G0450300
rosa_samantha	Rh4AG095300 Rh4BG092700 Rh4CG103800 Rh4DG087700 Rh7AG053900 Rh7BG053400 Rh7CG055000 Rh7DG053200
rosa_wichuraiana	Rw4G007840 Rw7G004390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	847
AccII	CGCG	1 cut(s)	167
AciI	CCGC	5 cut(s)	165, 367, 387, 543, 593
AclWI	GGATC	2 cut(s)	444, 521
AcsI	RAATTY	4 cut(s)	546, 628, 725, 803
AcuI	CTGAAG	1 cut(s)	534
AdeI	CACNNNGTG	1 cut(s)	907
AfaI	GTAC	2 cut(s)	404, 495
AfiI	CCNNNNNNNGG	3 cut(s)	28, 536, 930
AgsI	TTSAA	4 cut(s)	300, 584, 634, 663
AhlI	ACTAGT	1 cut(s)	443
AjiI	CACGTC	1 cut(s)	873
AluBI	AGCT	8 cut(s)	14, 203, 347, 376, 601, 625, 712, 818
AluI	AGCT	8 cut(s)	14, 203, 347, 376, 601, 625, 712, 818
Alw26I	GTCTC	1 cut(s)	758
AlwI	GGATC	2 cut(s)	444, 521
AoxI	GGCC	2 cut(s)	158, 191
ApeKI	GCWGC	2 cut(s)	818, 835
ApoI	RAATTY	4 cut(s)	546, 628, 725, 803
AspLEI	GCGC	1 cut(s)	169
AspS9I	GGNCC	4 cut(s)	159, 192, 436, 567
AsuC2I	CCSGG	2 cut(s)	531, 720
AsuHPI	GGTGA	5 cut(s)	111, 117, 743, 770, 898
AsuII	TTCGAA	1 cut(s)	807
AvaII	GGWCC	2 cut(s)	436, 567
BbvI	GCAGC	2 cut(s)	805, 847
BccI	CCATC	1 cut(s)	578
BceAI	ACGGC	1 cut(s)	159
BclI	TGATCA	1 cut(s)	796
BcnI	CCSGG	2 cut(s)	531, 720
BcoDI	GTCTC	1 cut(s)	758
BcuI	ACTAGT	1 cut(s)	443
BfaI	CTAG	2 cut(s)	134, 444
BfuAI	ACCTGC	1 cut(s)	847
BisI	GCNGC	3 cut(s)	368, 819, 836
BlsI	GCNGC	3 cut(s)	369, 820, 837
Bme1390I	CCNGG	2 cut(s)	531, 720
Bme18I	GGWCC	2 cut(s)	436, 567
BmgBI	CACGTC	1 cut(s)	873
BmgT120I	GGNCC	4 cut(s)	159, 192, 436, 567
BmrFI	CCNGG	2 cut(s)	531, 720
BmsI	GCATC	3 cut(s)	146, 449, 886
Bpu14I	TTCGAA	1 cut(s)	807
BpuMI	CCSGG	2 cut(s)	531, 720
Bsc4I	CCNNNNNNNGG	3 cut(s)	28, 536, 930
Bse118I	RCCGGY	1 cut(s)	127
Bse1I	ACTGG	2 cut(s)	551, 594
Bse3DI	GCAATG	2 cut(s)	33, 224
BseGI	GGATG	3 cut(s)	712, 799, 916
BseLI	CCNNNNNNNGG	3 cut(s)	28, 536, 930
BseMI	GCAATG	2 cut(s)	33, 224
BseMII	CTCAG	2 cut(s)	170, 308
BseNI	ACTGG	2 cut(s)	551, 594
BseRI	GAGGAG	2 cut(s)	611, 776
BseXI	GCAGC	2 cut(s)	805, 847
BseYI	CCCAGC	3 cut(s)	22, 43, 100
BsgI	GTGCAG	1 cut(s)	804
Bsh1236I	CGCG	1 cut(s)	167
BshFI	GGCC	2 cut(s)	160, 193
BsiSI	CCGG	3 cut(s)	128, 531, 719
BslI	CCNNNNNNNGG	3 cut(s)	28, 536, 930
BsmAI	GTCTC	1 cut(s)	758
BsnI	GGCC	2 cut(s)	160, 193
Bsp119I	TTCGAA	1 cut(s)	807
Bsp143I	GATC	5 cut(s)	245, 449, 526, 796, 841
BspACI	CCGC	5 cut(s)	165, 367, 387, 543, 593
BspANI	GGCC	2 cut(s)	160, 193
BspCNI	CTCAG	2 cut(s)	171, 309
BspFNI	CGCG	1 cut(s)	167
BspHI	TCATGA	2 cut(s)	844, 956
BspMI	ACCTGC	1 cut(s)	847
BspPI	GGATC	2 cut(s)	444, 521
BspT104I	TTCGAA	1 cut(s)	807
BsrDI	GCAATG	2 cut(s)	33, 224
BsrFI	RCCGGY	1 cut(s)	127
BsrI	ACTGG	2 cut(s)	551, 594
BssAI	RCCGGY	1 cut(s)	127
BssMI	GATC	5 cut(s)	245, 449, 526, 796, 841
Bst4CI	ACNGT	3 cut(s)	123, 685, 692
BstBI	TTCGAA	1 cut(s)	807
BstC8I	GCNNGC	2 cut(s)	349, 816
BstDEI	CTNAG	2 cut(s)	179, 317
BstF5I	GGATG	3 cut(s)	712, 799, 916
BstFNI	CGCG	1 cut(s)	167
BstHHI	GCGC	1 cut(s)	169
BstKTI	GATC	5 cut(s)	248, 452, 529, 799, 844
BstMAI	GTCTC	1 cut(s)	758
BstMBI	GATC	5 cut(s)	245, 449, 526, 796, 841
BstMWI	GCNNNNNNNGC	5 cut(s)	11, 143, 157, 166, 373
BstNSI	RCATGY	2 cut(s)	295, 947
BstSCI	CCNGG	2 cut(s)	529, 718
BstUI	CGCG	1 cut(s)	167
BstV1I	GCAGC	2 cut(s)	805, 847
BstX2I	RGATCY	1 cut(s)	449
BstYI	RGATCY	1 cut(s)	449
BsuRI	GGCC	2 cut(s)	160, 193
BtrI	CACGTC	1 cut(s)	873
BtsCI	GGATG	3 cut(s)	712, 799, 916
BtsI	GCAGTG	1 cut(s)	237
BtsIMutI	CAGTG	1 cut(s)	237
BveI	ACCTGC	1 cut(s)	847
Cac8I	GCNNGC	2 cut(s)	349, 816
CciI	TCATGA	2 cut(s)	844, 956
CfoI	GCGC	1 cut(s)	169
Cfr10I	RCCGGY	1 cut(s)	127
Cfr13I	GGNCC	4 cut(s)	159, 192, 436, 567
Csp6I	GTAC	2 cut(s)	403, 494
CviAII	CATG	8 cut(s)	39, 292, 412, 433, 454, 845, 944, 957
CviQI	GTAC	2 cut(s)	403, 494
DdeI	CTNAG	2 cut(s)	179, 317
DpnI	GATC	5 cut(s)	247, 451, 528, 798, 843
DpnII	GATC	5 cut(s)	245, 449, 526, 796, 841
DraIII	CACNNNGTG	1 cut(s)	907
EciI	GGCGGA	2 cut(s)	558, 608
Eco47I	GGWCC	2 cut(s)	436, 567
Eco57I	CTGAAG	1 cut(s)	534
EcoRI	GAATTC	1 cut(s)	546
EcoT22I	ATGCAT	1 cut(s)	945
FaeI	CATG	8 cut(s)	42, 295, 415, 436, 457, 848, 947, 960
FatI	CATG	8 cut(s)	38, 291, 411, 432, 453, 844, 943, 956
FbaI	TGATCA	1 cut(s)	796
Fnu4HI	GCNGC	3 cut(s)	368, 819, 836
FokI	GGATG	3 cut(s)	719, 806, 923
Fsp4HI	GCNGC	3 cut(s)	368, 819, 836
FspBI	CTAG	2 cut(s)	134, 444
GlaI	GCGC	1 cut(s)	168
GluI	GCNGC	3 cut(s)	368, 819, 836
GsaI	CCCAGC	3 cut(s)	26, 47, 104
HaeIII	GGCC	2 cut(s)	160, 193
HapII	CCGG	3 cut(s)	128, 531, 719
HhaI	GCGC	1 cut(s)	169
Hin1II	CATG	8 cut(s)	42, 295, 415, 436, 457, 848, 947, 960
Hin6I	GCGC	1 cut(s)	167
HinP1I	GCGC	1 cut(s)	167
HindIII	AAGCTT	1 cut(s)	345
HinfI	GANTC	1 cut(s)	7
HpaII	CCGG	3 cut(s)	128, 531, 719
HphI	GGTGA	5 cut(s)	111, 117, 743, 770, 898
Hpy166II	GTNNAC	2 cut(s)	268, 688
Hpy188I	TCNGA	4 cut(s)	318, 514, 706, 801
Hpy188III	TCNNGA	3 cut(s)	607, 845, 957
Hpy8I	GTNNAC	2 cut(s)	268, 688
Hpy99I	CGWCG	2 cut(s)	403, 874
HpyAV	CCTTC	2 cut(s)	63, 306
HpyCH4III	ACNGT	3 cut(s)	123, 685, 692
HpyCH4IV	ACGT	2 cut(s)	675, 872
HpyCH4V	TGCA	7 cut(s)	242, 560, 747, 821, 856, 881, 943
HpyF10VI	GCNNNNNNNGC	5 cut(s)	11, 143, 157, 166, 373
HpyF3I	CTNAG	2 cut(s)	179, 317
HpySE526I	ACGT	2 cut(s)	675, 872
Hsp92II	CATG	8 cut(s)	42, 295, 415, 436, 457, 848, 947, 960
HspAI	GCGC	1 cut(s)	167
Ksp22I	TGATCA	1 cut(s)	796
Kzo9I	GATC	5 cut(s)	245, 449, 526, 796, 841
LmnI	GCTCC	3 cut(s)	373, 598, 622
Lsp1109I	GCAGC	2 cut(s)	805, 847
LweI	GCATC	3 cut(s)	146, 449, 886
MaeI	CTAG	2 cut(s)	134, 444
MaeII	ACGT	2 cut(s)	675, 872
MaeIII	GTNAC	3 cut(s)	123, 424, 671
MalI	GATC	5 cut(s)	247, 451, 528, 798, 843
MboI	GATC	5 cut(s)	245, 449, 526, 796, 841
MboII	GAAGA	8 cut(s)	48, 51, 54, 219, 222, 225, 492, 527
MflI	RGATCY	1 cut(s)	449
MluCI	AATT	7 cut(s)	356, 546, 628, 653, 663, 725, 803
MmeI	TCCRAC	2 cut(s)	684, 704
MnlI	CCTC	9 cut(s)	82, 127, 141, 150, 268, 589, 754, 877, 928
Mph1103I	ATGCAT	1 cut(s)	945
MseI	TTAA	1 cut(s)	363
MspA1I	CMGCKG	2 cut(s)	14, 818
MspI	CCGG	3 cut(s)	128, 531, 719
MspR9I	CCNGG	2 cut(s)	531, 720
MvnI	CGCG	1 cut(s)	167
MwoI	GCNNNNNNNGC	5 cut(s)	11, 143, 157, 166, 373
NciI	CCSGG	2 cut(s)	531, 720
NdeII	GATC	5 cut(s)	245, 449, 526, 796, 841
NlaIII	CATG	8 cut(s)	42, 295, 415, 436, 457, 848, 947, 960
NmuCI	GTSAC	2 cut(s)	123, 671
NsiI	ATGCAT	1 cut(s)	945
NspI	RCATGY	2 cut(s)	295, 947
NspV	TTCGAA	1 cut(s)	807
PagI	TCATGA	2 cut(s)	844, 956
PfeI	GAWTC	1 cut(s)	7
PfoI	TCCNGGA	2 cut(s)	529, 718
PkrI	GCNGC	3 cut(s)	369, 820, 837
PspFI	CCCAGC	3 cut(s)	22, 43, 100
PspPI	GGNCC	4 cut(s)	159, 192, 436, 567
PsuI	RGATCY	1 cut(s)	449
PvuII	CAGCTG	2 cut(s)	14, 818
RsaI	GTAC	2 cut(s)	404, 495
RsaNI	GTAC	2 cut(s)	403, 494
SaqAI	TTAA	1 cut(s)	363
SatI	GCNGC	3 cut(s)	368, 819, 836
Sau3AI	GATC	5 cut(s)	245, 449, 526, 796, 841
Sau96I	GGNCC	4 cut(s)	159, 192, 436, 567
ScrFI	CCNGG	2 cut(s)	531, 720
SfaNI	GCATC	3 cut(s)	146, 449, 886
SfuI	TTCGAA	1 cut(s)	807
SinI	GGWCC	2 cut(s)	436, 567
SpeI	ACTAGT	1 cut(s)	443
Sse9I	AATT	7 cut(s)	356, 546, 628, 653, 663, 725, 803
SsiI	CCGC	5 cut(s)	165, 367, 387, 543, 593
SspI	AATATT	1 cut(s)	918
SspMI	CTAG	2 cut(s)	134, 444
StyD4I	CCNGG	2 cut(s)	529, 718
TaaI	ACNGT	3 cut(s)	123, 685, 692
TaiI	ACGT	2 cut(s)	678, 875
TaqI	TCGA	2 cut(s)	382, 807
TasI	AATT	7 cut(s)	356, 546, 628, 653, 663, 725, 803
TauI	GCSGC	1 cut(s)	370
TfiI	GAWTC	1 cut(s)	7
Tru1I	TTAA	1 cut(s)	363
Tru9I	TTAA	1 cut(s)	363
TscAI	CASTG	1 cut(s)	244
TseFI	GTSAC	2 cut(s)	123, 671
TseI	GCWGC	2 cut(s)	818, 835
Tsp45I	GTSAC	2 cut(s)	123, 671
TspDTI	ATGAA	3 cut(s)	368, 927, 945
TspRI	CASTG	1 cut(s)	244
VpaK11BI	GGWCC	2 cut(s)	436, 567
XapI	RAATTY	4 cut(s)	546, 628, 725, 803
XceI	RCATGY	2 cut(s)	295, 947
XspI	CTAG	2 cut(s)	134, 444
Zsp2I	ATGCAT	1 cut(s)	945

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.