Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0002780

Physical Location & Seq

Genomic Coordinates Reverse (-)

7963465 .. 7966789

Gene Structure 3325 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g14050.t4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

ATGGGTTCGAGAGAGTTGGGGGTTCTCAGTGACATGCCGGAAATAGTAAAGAAGGCTTCTCAGAAGTTACATAAACAGAAGGAACTTCATCGGCGCAAGCTTTTATCCTCGTACAAGGACATGGTCTCCATTGTAACTAACATGGTTAAAACTAGTAGATCCATGAGATGTTTCGTCAAAGGGTCAAGCAATAGTCCACTTTTACAATTTTCTGGCTATTCAGAACATAATAATGATCCTGGAGATGGTGGTGGGATTCCAGTCTTCACATTTTGGTCGATCTCTTGCTTTGAGAAAGTGGCAGAGGAGCTTGTTCATATGCTTATGTTGGAGCTAAATGTGAAGCGTTTGCTTGTGGTGGAATTACTGTCAGTTGGTTCCAAAGTTTCACCGGCTAACATTTTGCATTGGTCTGAAGAGCTTTATCCAGAAGAATTTGGTGATTTGAGTATGTGCAACTTATTGTCTGAGGAAACTTGTGAACCAGTCTATCCAAGGTTGCATGGTCAGAAATCTGATAAGCCGGCTATTCGACGTAACCAGCAGCCAGATCATGATGTTTTACAGGTTTATCTAACAACATGGCTCGTAGAGGTTAACATAGATTCTCACAGGGTGGACGAAATTTTTGCTGAAGTTGGGGAGGAAATACATTGTAAACTTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

223

Amino Acids

25.23

Weight (kDa)

5.86

Isoelectric Point (pI)

54.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002780)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07950
fragaria_vesca	FvH4_5g14050 FvH4_5g14050 FvH4_5g14050 FvH4_5g14050 FvH4_5g14150
malus_domestica	MD14G1210300.v1.1 MD17G1029400.v1.1
prunus_persica	Prupe.1G213800_v2.0.a1 Prupe.1G213800_v2.0.a1 Prupe.7G041400_v2.0.a1 Prupe.7G041400_v2.0.a1 Prupe.7G041400_v2.0.a1 Prupe.7G041400_v2.0.a1
pyrus_communis	pycom17g02660
rosa_chinensis	RchiOBHm_Chr4g0399581 RchiOBHm_Chr7g0182771
rosa_laevigata	RLG00000005101 RLG00000009261
rosa_multiflora	Rmu_co8503039.1_g000001 Rmu_sc0000014.1_g000030 Rmu_sc0002285.1_g000035 Rmu_sc0024464.1_g000001
rosa_roxburghii	Rroxscaffold_3G00270990 Rroxscaffold_5G00344490
rosa_rugosa	Rorug04G0017400 Rorug06G0450100 Rorug06G0450200 Rorug06G0450300
rosa_samantha	Rh4AG095300 Rh4BG092700 Rh4CG103800 Rh4DG087700 Rh7AG053900 Rh7BG053400 Rh7CG055000 Rh7DG053200
rosa_wichuraiana	Rw4G007840 Rw7G004390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	153, 230
AcsI	RAATTY	2 cut(s)	434, 624
AcuI	CTGAAG	2 cut(s)	435, 654
AdeI	CACNNNGTG	1 cut(s)	616
AfaI	GTAC	1 cut(s)	113
AfiI	CCNNNNNNNGG	1 cut(s)	245
AhlI	ACTAGT	1 cut(s)	152
AjnI	CCWGG	1 cut(s)	238
AluBI	AGCT	4 cut(s)	100, 310, 334, 421
AluI	AGCT	4 cut(s)	100, 310, 334, 421
Alw26I	GTCTC	1 cut(s)	130
AlwI	GGATC	2 cut(s)	153, 230
ApeKI	GCWGC	1 cut(s)	544
ApoI	RAATTY	2 cut(s)	434, 624
ArsI	GACNNNNNNTTYG	2 cut(s)	611, 643
AspLEI	GCGC	1 cut(s)	96
AsuHPI	GGTGA	2 cut(s)	381, 452
BbsI	GAAGAC	1 cut(s)	256
BbvI	GCAGC	1 cut(s)	556
BccI	CCATC	1 cut(s)	239
BcgI	CGANNNNNNTGC	2 cut(s)	611, 645
BciT130I	CCWGG	1 cut(s)	240
BcoDI	GTCTC	1 cut(s)	130
BcuI	ACTAGT	1 cut(s)	152
BfaI	CTAG	1 cut(s)	153
BisI	GCNGC	1 cut(s)	545
BlsI	GCNGC	1 cut(s)	546
Bme1390I	CCNGG	1 cut(s)	240
BmiI	GGNNCC	1 cut(s)	379
BmrFI	CCNGG	1 cut(s)	240
BpiI	GAAGAC	1 cut(s)	256
BpmI	CTGGAG	1 cut(s)	261
BsaI	GGTCTC	1 cut(s)	130
BsaJI	CCNNGG	1 cut(s)	494
BsaXI	ACNNNNNCTCC	2 cut(s)	110, 140
Bsc4I	CCNNNNNNNGG	1 cut(s)	245
Bse118I	RCCGGY	2 cut(s)	391, 523
Bse1I	ACTGG	2 cut(s)	260, 485
BseBI	CCWGG	1 cut(s)	240
BseDI	CCNNGG	1 cut(s)	494
BseLI	CCNNNNNNNGG	1 cut(s)	245
BseMII	CTCAG	3 cut(s)	40, 74, 459
BseNI	ACTGG	2 cut(s)	260, 485
BseRI	GAGGAG	1 cut(s)	320
BseXI	GCAGC	1 cut(s)	556
BsiSI	CCGG	3 cut(s)	38, 392, 524
BslI	CCNNNNNNNGG	1 cut(s)	245
BsmAI	GTCTC	1 cut(s)	130
Bso31I	GGTCTC	1 cut(s)	130
Bsp143I	GATC	4 cut(s)	158, 235, 279, 550
BspCNI	CTCAG	3 cut(s)	39, 73, 460
BspHI	TCATGA	1 cut(s)	553
BspLI	GGNNCC	1 cut(s)	379
BspPI	GGATC	2 cut(s)	153, 230
BspQI	GCTCTTC	1 cut(s)	411
BspTNI	GGTCTC	1 cut(s)	130
BsrFI	RCCGGY	2 cut(s)	391, 523
BsrI	ACTGG	2 cut(s)	260, 485
BssAI	RCCGGY	2 cut(s)	391, 523
BssECI	CCNNGG	1 cut(s)	494
BssMI	GATC	4 cut(s)	158, 235, 279, 550
BssT1I	CCWWGG	1 cut(s)	494
Bst2UI	CCWGG	1 cut(s)	240
Bst4CI	ACNGT	1 cut(s)	369
Bst6I	CTCTTC	1 cut(s)	411
BstC8I	GCNNGC	2 cut(s)	98, 525
BstDEI	CTNAG	3 cut(s)	26, 60, 468
BstHHI	GCGC	1 cut(s)	96
BstKTI	GATC	4 cut(s)	161, 238, 282, 553
BstMAI	GTCTC	1 cut(s)	130
BstMBI	GATC	4 cut(s)	158, 235, 279, 550
BstNI	CCWGG	1 cut(s)	240
BstNSI	RCATGY	1 cut(s)	37
BstSCI	CCNGG	1 cut(s)	238
BstV1I	GCAGC	1 cut(s)	556
BstV2I	GAAGAC	1 cut(s)	256
BstX2I	RGATCY	1 cut(s)	158
BstYI	RGATCY	1 cut(s)	158
BtsIMutI	CAGTG	1 cut(s)	34
Cac8I	GCNNGC	2 cut(s)	98, 525
CciI	TCATGA	1 cut(s)	553
CfoI	GCGC	1 cut(s)	96
Cfr10I	RCCGGY	2 cut(s)	391, 523
Csp6I	GTAC	1 cut(s)	112
CviAII	CATG	7 cut(s)	34, 121, 142, 163, 503, 554, 582
CviQI	GTAC	1 cut(s)	112
DdeI	CTNAG	3 cut(s)	26, 60, 468
DpnI	GATC	4 cut(s)	160, 237, 281, 552
DpnII	GATC	4 cut(s)	158, 235, 279, 550
DraIII	CACNNNGTG	1 cut(s)	616
Eam1104I	CTCTTC	1 cut(s)	411
EarI	CTCTTC	1 cut(s)	411
Eco130I	CCWWGG	1 cut(s)	494
Eco31I	GGTCTC	1 cut(s)	130
Eco57I	CTGAAG	2 cut(s)	435, 654
EcoRII	CCWGG	1 cut(s)	238
EcoT14I	CCWWGG	1 cut(s)	494
ErhI	CCWWGG	1 cut(s)	494
FaeI	CATG	7 cut(s)	37, 124, 145, 166, 506, 557, 585
FatI	CATG	7 cut(s)	33, 120, 141, 162, 502, 553, 581
FauNDI	CATATG	1 cut(s)	318
Fnu4HI	GCNGC	1 cut(s)	545
Fsp4HI	GCNGC	1 cut(s)	545
FspBI	CTAG	1 cut(s)	153
GlaI	GCGC	1 cut(s)	95
GluI	GCNGC	1 cut(s)	545
GsuI	CTGGAG	1 cut(s)	261
HapII	CCGG	3 cut(s)	38, 392, 524
HhaI	GCGC	1 cut(s)	96
Hin1II	CATG	7 cut(s)	37, 124, 145, 166, 506, 557, 585
Hin6I	GCGC	1 cut(s)	94
HinP1I	GCGC	1 cut(s)	94
HincII	GTYRAC	1 cut(s)	598
HindII	GTYRAC	1 cut(s)	598
HindIII	AAGCTT	1 cut(s)	98
HinfI	GANTC	2 cut(s)	256, 605
HpaI	GTTAAC	1 cut(s)	598
HpaII	CCGG	3 cut(s)	38, 392, 524
HphI	GGTGA	2 cut(s)	381, 452
Hpy166II	GTNNAC	5 cut(s)	197, 482, 598, 619, 659
Hpy188I	TCNGA	6 cut(s)	63, 223, 415, 469, 510, 517
Hpy188III	TCNNGA	3 cut(s)	9, 428, 554
Hpy8I	GTNNAC	5 cut(s)	197, 482, 598, 619, 659
Hpy99I	CGWCG	1 cut(s)	537
HpyAV	CCTTC	2 cut(s)	46, 73
HpyCH4III	ACNGT	1 cut(s)	369
HpyCH4IV	ACGT	1 cut(s)	535
HpyCH4V	TGCA	3 cut(s)	406, 456, 502
HpyF3I	CTNAG	3 cut(s)	26, 60, 468
HpySE526I	ACGT	1 cut(s)	535
Hsp92II	CATG	7 cut(s)	37, 124, 145, 166, 506, 557, 585
HspAI	GCGC	1 cut(s)	94
KroI	GCCGGC	1 cut(s)	523
KroNI	GCCGGC	1 cut(s)	525
KspAI	GTTAAC	1 cut(s)	598
Kzo9I	GATC	4 cut(s)	158, 235, 279, 550
LguI	GCTCTTC	1 cut(s)	411
LmnI	GCTCC	2 cut(s)	307, 331
Lsp1109I	GCAGC	1 cut(s)	556
MaeI	CTAG	1 cut(s)	153
MaeII	ACGT	1 cut(s)	535
MaeIII	GTNAC	4 cut(s)	29, 66, 133, 536
MalI	GATC	4 cut(s)	160, 237, 281, 552
MboI	GATC	4 cut(s)	158, 235, 279, 550
MboII	GAAGA	3 cut(s)	256, 428, 443
MflI	RGATCY	1 cut(s)	158
MluCI	AATT	4 cut(s)	206, 362, 434, 624
MmeI	TCCRAC	1 cut(s)	309
MnlI	CCTC	5 cut(s)	118, 298, 463, 586, 637
MroNI	GCCGGC	1 cut(s)	523
MseI	TTAA	2 cut(s)	147, 597
MslI	CAYNNNNRTG	1 cut(s)	231
MspI	CCGG	3 cut(s)	38, 392, 524
MspR9I	CCNGG	1 cut(s)	240
MvaI	CCWGG	1 cut(s)	240
NaeI	GCCGGC	1 cut(s)	525
NdeI	CATATG	1 cut(s)	318
NdeII	GATC	4 cut(s)	158, 235, 279, 550
NgoMIV	GCCGGC	1 cut(s)	523
NlaIII	CATG	7 cut(s)	37, 124, 145, 166, 506, 557, 585
NlaIV	GGNNCC	1 cut(s)	379
NmuCI	GTSAC	1 cut(s)	29
NspI	RCATGY	1 cut(s)	37
PagI	TCATGA	1 cut(s)	553
PciSI	GCTCTTC	1 cut(s)	411
PdiI	GCCGGC	1 cut(s)	525
PfeI	GAWTC	2 cut(s)	256, 605
PflFI	GACNNNGTC	1 cut(s)	122
PfoI	TCCNGGA	1 cut(s)	238
PkrI	GCNGC	1 cut(s)	546
Psp6I	CCWGG	1 cut(s)	238
PspGI	CCWGG	1 cut(s)	238
PspN4I	GGNNCC	1 cut(s)	379
PsuI	RGATCY	1 cut(s)	158
PsyI	GACNNNGTC	1 cut(s)	122
RsaI	GTAC	1 cut(s)	113
RsaNI	GTAC	1 cut(s)	112
RseI	CAYNNNNRTG	1 cut(s)	231
SapI	GCTCTTC	1 cut(s)	411
SaqAI	TTAA	2 cut(s)	147, 597
SatI	GCNGC	1 cut(s)	545
Sau3AI	GATC	4 cut(s)	158, 235, 279, 550
ScrFI	CCNGG	1 cut(s)	240
SetI	ASST	8 cut(s)	102, 312, 336, 423, 500, 538, 570, 597
SmiMI	CAYNNNNRTG	1 cut(s)	231
SpeI	ACTAGT	1 cut(s)	152
Sse9I	AATT	4 cut(s)	206, 362, 434, 624
SspMI	CTAG	1 cut(s)	153
StyD4I	CCNGG	1 cut(s)	238
StyI	CCWWGG	1 cut(s)	494
TaaI	ACNGT	1 cut(s)	369
TaiI	ACGT	1 cut(s)	538
TaqI	TCGA	3 cut(s)	8, 278, 532
TasI	AATT	4 cut(s)	206, 362, 434, 624
TfiI	GAWTC	2 cut(s)	256, 605
Tru1I	TTAA	2 cut(s)	147, 597
Tru9I	TTAA	2 cut(s)	147, 597
TscAI	CASTG	1 cut(s)	34
TseFI	GTSAC	1 cut(s)	29
TseI	GCWGC	1 cut(s)	544
Tsp45I	GTSAC	1 cut(s)	29
TspDTI	ATGAA	2 cut(s)	77, 305
TspRI	CASTG	1 cut(s)	34
Tth111I	GACNNNGTC	1 cut(s)	122
XapI	RAATTY	2 cut(s)	434, 624
XceI	RCATGY	1 cut(s)	37
XspI	CTAG	1 cut(s)	153

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.