Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0002780

Physical Location & Seq

Genomic Coordinates Reverse (-)

13379405 .. 13382215

Gene Structure 2811 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG087700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 906 bp

ATGGAAGCTCTAAACCCAGCAACTCCGAAATCGACGAACCCGAATCCCCAGACTCCGACCCAAAGCCCATCATCATTAGCAGCGTCGTCTGCTCGGCTGTGGAGGCCCACCGCGCAGCGCAACCTGAGAAGCCAGTGGTCCAAGTTAGCTTCTTTGAGACAACAATGGGAGTCTGCTTCTTCTAGCGGAAGAGCACACGCCACTTCGCTCGTAAACTCCTACCTTTCCATCAAGTGCATGCCTTCAAGGGAGTTGGGGGTTCTCAGCGACATGCCGGATATACTAAAGAAAGCTTCACAGAAATTGCTTAAGCAGCAGGAACTTTATCGGAGCAAGCTTTTATCATCATACAAGGACATGGTGTCTGTTGTAACTAATATGGTCAAAACTAGTAGATCCATGAGATGCTTTGTCAAAGGGTCAACCAATAGTCCACTTTTACAATTTTCTGGCTATTCCGAATGTAATAATGACCCTGGAGATGGTGGTGGGATTCGAGTCTTCACATTTTGGTCGATCTCTTGCTTTGAGAAAGTGGCGGAGGAGCTTGTCCATATGCTTATATTGGAACTAAATTTGAAGCGTTTGCTTGTGGTGGACTTACTGTCAGTTAGTTGCAAAGTTCCAACGGCTAACAGCTTGCATTGGTCTGAAGAGCTATATCCAGGAGAATTTGGTGATTTGAGTATATGCAACTTATTATCTGAGGAAACTTGTAAACCAGTCTATCCAAGATTGCATGGTCAGAAATCTGATAAGCCAGCTATTGGACGTAATCAGCAGCCAGATCATGATGTTTTGCAGGTTTATCTAACAACATGGCTCATAGAGGTGAACATTGATACTGACAGGGTGGATGAAATATTTGCTGAAGTTGGGGAGGAAATACATTGTAGGCTTTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

301

Amino Acids

33.68

Weight (kDa)

7.57

Isoelectric Point (pI)

49.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002780)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07950
fragaria_vesca	FvH4_5g14050 FvH4_5g14050 FvH4_5g14050 FvH4_5g14050 FvH4_5g14150
malus_domestica	MD14G1210300.v1.1 MD17G1029400.v1.1
prunus_persica	Prupe.1G213800_v2.0.a1 Prupe.1G213800_v2.0.a1 Prupe.7G041400_v2.0.a1 Prupe.7G041400_v2.0.a1 Prupe.7G041400_v2.0.a1 Prupe.7G041400_v2.0.a1
pyrus_communis	pycom17g02660
rosa_chinensis	RchiOBHm_Chr4g0399581 RchiOBHm_Chr7g0182771
rosa_laevigata	RLG00000005101 RLG00000009261
rosa_multiflora	Rmu_co8503039.1_g000001 Rmu_sc0000014.1_g000030 Rmu_sc0002285.1_g000035 Rmu_sc0024464.1_g000001
rosa_roxburghii	Rroxscaffold_3G00270990 Rroxscaffold_5G00344490
rosa_rugosa	Rorug04G0017400 Rorug06G0450100 Rorug06G0450200 Rorug06G0450300
rosa_samantha	Rh4AG095300 Rh4BG092700 Rh4CG103800 Rh4DG087700 Rh7AG053900 Rh7BG053400 Rh7CG055000 Rh7DG053200
rosa_wichuraiana	Rw4G007840 Rw7G004390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	793
AccB7I	CCANNNNNTGG	1 cut(s)	767
AccII	CGCG	1 cut(s)	113
AciI	CCGC	3 cut(s)	111, 186, 539
AclWI	GGATC	1 cut(s)	390
AcsI	RAATTY	2 cut(s)	574, 671
AcuI	CTGAAG	2 cut(s)	672, 891
AfiI	CCNNNNNNNGG	2 cut(s)	482, 767
AflII	CTTAAG	1 cut(s)	308
AgsI	TTSAA	2 cut(s)	246, 580
AhdI	GACNNNNNGTC	2 cut(s)	361, 604
AhlI	ACTAGT	1 cut(s)	389
AjnI	CCWGG	2 cut(s)	475, 664
AluBI	AGCT	8 cut(s)	8, 149, 293, 337, 547, 639, 658, 764
AluI	AGCT	8 cut(s)	8, 149, 293, 337, 547, 639, 658, 764
Alw21I	GWGCWC	1 cut(s)	196
Alw26I	GTCTC	1 cut(s)	151
AlwI	GGATC	1 cut(s)	390
AoxI	GGCC	1 cut(s)	104
ApeKI	GCWGC	4 cut(s)	80, 115, 313, 781
ApoI	RAATTY	2 cut(s)	574, 671
AspLEI	GCGC	2 cut(s)	115, 120
AspS9I	GGNCC	2 cut(s)	105, 138
AsuHPI	GGTGA	2 cut(s)	689, 844
AvaII	GGWCC	1 cut(s)	138
BbsI	GAAGAC	1 cut(s)	493
Bbv12I	GWGCWC	1 cut(s)	196
BbvI	GCAGC	4 cut(s)	92, 127, 325, 793
BccI	CCATC	3 cut(s)	76, 236, 476
BceAI	ACGGC	1 cut(s)	645
BciT130I	CCWGG	2 cut(s)	477, 666
BcoDI	GTCTC	1 cut(s)	151
BcuI	ACTAGT	1 cut(s)	389
BfaI	CTAG	2 cut(s)	183, 390
BfrI	CTTAAG	1 cut(s)	308
BfuAI	ACCTGC	1 cut(s)	793
BisI	GCNGC	4 cut(s)	81, 116, 314, 782
BlsI	GCNGC	4 cut(s)	82, 117, 315, 783
Bme1390I	CCNGG	2 cut(s)	477, 666
Bme18I	GGWCC	1 cut(s)	138
BmeRI	GACNNNNNGTC	2 cut(s)	361, 604
BmgT120I	GGNCC	2 cut(s)	105, 138
BmrFI	CCNGG	2 cut(s)	477, 666
BmsI	GCATC	1 cut(s)	395
BpiI	GAAGAC	1 cut(s)	493
BpmI	CTGGAG	1 cut(s)	498
BsaJI	CCNNGG	1 cut(s)	475
Bsc4I	CCNNNNNNNGG	2 cut(s)	482, 767
Bse1I	ACTGG	2 cut(s)	133, 722
BseBI	CCWGG	2 cut(s)	477, 666
BseDI	CCNNGG	1 cut(s)	475
BseGI	GGATG	1 cut(s)	862
BseLI	CCNNNNNNNGG	2 cut(s)	482, 767
BseMII	CTCAG	3 cut(s)	116, 277, 696
BseNI	ACTGG	2 cut(s)	133, 722
BseRI	GAGGAG	1 cut(s)	557
BseXI	GCAGC	4 cut(s)	92, 127, 325, 793
BseYI	CCCAGC	1 cut(s)	16
Bsh1236I	CGCG	1 cut(s)	113
BshFI	GGCC	1 cut(s)	106
BsiHKAI	GWGCWC	1 cut(s)	196
BsiSI	CCGG	1 cut(s)	275
BslI	CCNNNNNNNGG	2 cut(s)	482, 767
BsmAI	GTCTC	1 cut(s)	151
BsnI	GGCC	1 cut(s)	106
Bsp1286I	GDGCHC	1 cut(s)	196
Bsp143I	GATC	3 cut(s)	395, 516, 787
BspACI	CCGC	3 cut(s)	111, 186, 539
BspANI	GGCC	1 cut(s)	106
BspCNI	CTCAG	3 cut(s)	117, 276, 697
BspFNI	CGCG	1 cut(s)	113
BspHI	TCATGA	2 cut(s)	790, 902
BspMI	ACCTGC	1 cut(s)	793
BspPI	GGATC	1 cut(s)	390
BspQI	GCTCTTC	2 cut(s)	184, 648
BspTI	CTTAAG	1 cut(s)	308
BsrI	ACTGG	2 cut(s)	133, 722
BssECI	CCNNGG	1 cut(s)	475
BssMI	GATC	3 cut(s)	395, 516, 787
Bst2UI	CCWGG	2 cut(s)	477, 666
Bst4CI	ACNGT	1 cut(s)	606
Bst6I	CTCTTC	2 cut(s)	184, 648
BstAFI	CTTAAG	1 cut(s)	308
BstC8I	GCNNGC	4 cut(s)	239, 335, 641, 762
BstDEI	CTNAG	3 cut(s)	125, 263, 705
BstF5I	GGATG	1 cut(s)	862
BstFNI	CGCG	1 cut(s)	113
BstHHI	GCGC	2 cut(s)	115, 120
BstKTI	GATC	3 cut(s)	398, 519, 790
BstMAI	GTCTC	1 cut(s)	151
BstMBI	GATC	3 cut(s)	395, 516, 787
BstMWI	GCNNNNNNNGC	4 cut(s)	89, 103, 112, 313
BstNI	CCWGG	2 cut(s)	477, 666
BstNSI	RCATGY	2 cut(s)	241, 274
BstSCI	CCNGG	2 cut(s)	475, 664
BstUI	CGCG	1 cut(s)	113
BstV1I	GCAGC	4 cut(s)	92, 127, 325, 793
BstV2I	GAAGAC	1 cut(s)	493
BstX2I	RGATCY	1 cut(s)	395
BstYI	RGATCY	1 cut(s)	395
BsuRI	GGCC	1 cut(s)	106
BtsCI	GGATG	1 cut(s)	862
BtsIMutI	CAGTG	1 cut(s)	140
BveI	ACCTGC	1 cut(s)	793
Cac8I	GCNNGC	4 cut(s)	239, 335, 641, 762
CciI	TCATGA	2 cut(s)	790, 902
CfoI	GCGC	2 cut(s)	115, 120
Cfr13I	GGNCC	2 cut(s)	105, 138
CseI	GACGC	1 cut(s)	72
CviAII	CATG	8 cut(s)	238, 271, 358, 400, 740, 791, 819, 903
DdeI	CTNAG	3 cut(s)	125, 263, 705
DpnI	GATC	3 cut(s)	397, 518, 789
DpnII	GATC	3 cut(s)	395, 516, 787
DriI	GACNNNNNGTC	2 cut(s)	361, 604
Eam1104I	CTCTTC	2 cut(s)	184, 648
Eam1105I	GACNNNNNGTC	2 cut(s)	361, 604
EarI	CTCTTC	2 cut(s)	184, 648
EciI	GGCGGA	1 cut(s)	554
Eco47I	GGWCC	1 cut(s)	138
Eco57I	CTGAAG	2 cut(s)	672, 891
EcoRII	CCWGG	2 cut(s)	475, 664
FaeI	CATG	8 cut(s)	241, 274, 361, 403, 743, 794, 822, 906
FatI	CATG	8 cut(s)	237, 270, 357, 399, 739, 790, 818, 902
FauNDI	CATATG	1 cut(s)	555
Fnu4HI	GCNGC	4 cut(s)	81, 116, 314, 782
FokI	GGATG	1 cut(s)	869
Fsp4HI	GCNGC	4 cut(s)	81, 116, 314, 782
FspBI	CTAG	2 cut(s)	183, 390
GlaI	GCGC	2 cut(s)	114, 119
GluI	GCNGC	4 cut(s)	81, 116, 314, 782
GsaI	CCCAGC	1 cut(s)	20
GsuI	CTGGAG	1 cut(s)	498
HaeIII	GGCC	1 cut(s)	106
HapII	CCGG	1 cut(s)	275
HgaI	GACGC	1 cut(s)	72
HhaI	GCGC	2 cut(s)	115, 120
Hin1II	CATG	8 cut(s)	241, 274, 361, 403, 743, 794, 822, 906
Hin6I	GCGC	2 cut(s)	113, 118
HinP1I	GCGC	2 cut(s)	113, 118
HincII	GTYRAC	1 cut(s)	423
HindII	GTYRAC	1 cut(s)	423
HindIII	AAGCTT	2 cut(s)	291, 335
HinfI	GANTC	5 cut(s)	43, 52, 170, 493, 498
HpaII	CCGG	1 cut(s)	275
HphI	GGTGA	2 cut(s)	689, 844
Hpy166II	GTNNAC	6 cut(s)	214, 423, 434, 598, 719, 835
Hpy188I	TCNGA	8 cut(s)	27, 57, 330, 460, 652, 706, 747, 754
Hpy188III	TCNNGA	2 cut(s)	791, 903
Hpy8I	GTNNAC	6 cut(s)	214, 423, 434, 598, 719, 835
Hpy99I	CGWCG	2 cut(s)	37, 88
HpyAV	CCTTC	1 cut(s)	252
HpyCH4III	ACNGT	1 cut(s)	606
HpyCH4IV	ACGT	1 cut(s)	772
HpyCH4V	TGCA	6 cut(s)	237, 618, 643, 693, 739, 802
HpyF10VI	GCNNNNNNNGC	4 cut(s)	89, 103, 112, 313
HpyF3I	CTNAG	3 cut(s)	125, 263, 705
HpySE526I	ACGT	1 cut(s)	772
Hsp92II	CATG	8 cut(s)	241, 274, 361, 403, 743, 794, 822, 906
HspAI	GCGC	2 cut(s)	113, 118
Kzo9I	GATC	3 cut(s)	395, 516, 787
LguI	GCTCTTC	2 cut(s)	184, 648
LmnI	GCTCC	2 cut(s)	330, 544
Lsp1109I	GCAGC	4 cut(s)	92, 127, 325, 793
LweI	GCATC	1 cut(s)	395
MaeI	CTAG	2 cut(s)	183, 390
MaeII	ACGT	1 cut(s)	772
MaeIII	GTNAC	1 cut(s)	370
MalI	GATC	3 cut(s)	397, 518, 789
MboI	GATC	3 cut(s)	395, 516, 787
MboII	GAAGA	4 cut(s)	171, 201, 493, 665
MflI	RGATCY	1 cut(s)	395
MhlI	GDGCHC	1 cut(s)	196
MluCI	AATT	4 cut(s)	302, 443, 574, 671
MlyI	GAGTC	3 cut(s)	46, 179, 507
MmeI	TCCRAC	2 cut(s)	80, 650
MnlI	CCTC	5 cut(s)	96, 535, 700, 823, 874
MseI	TTAA	1 cut(s)	309
MslI	CAYNNNNRTG	1 cut(s)	830
MspCI	CTTAAG	1 cut(s)	308
MspI	CCGG	1 cut(s)	275
MspR9I	CCNGG	2 cut(s)	477, 666
MteI	GCGCNGCGC	1 cut(s)	116
MvaI	CCWGG	2 cut(s)	477, 666
MvnI	CGCG	1 cut(s)	113
MwoI	GCNNNNNNNGC	4 cut(s)	89, 103, 112, 313
NdeI	CATATG	1 cut(s)	555
NdeII	GATC	3 cut(s)	395, 516, 787
NlaIII	CATG	8 cut(s)	241, 274, 361, 403, 743, 794, 822, 906
NmeAIII	GCCGAG	1 cut(s)	73
NspI	RCATGY	2 cut(s)	241, 274
PaeI	GCATGC	1 cut(s)	241
PagI	TCATGA	2 cut(s)	790, 902
PciSI	GCTCTTC	2 cut(s)	184, 648
PcsI	WCGNNNNNNNCGW	1 cut(s)	38
PfeI	GAWTC	2 cut(s)	43, 493
PflMI	CCANNNNNTGG	1 cut(s)	767
PfoI	TCCNGGA	1 cut(s)	664
PkrI	GCNGC	4 cut(s)	82, 117, 315, 783
PleI	GAGTC	3 cut(s)	46, 178, 506
PpsI	GAGTC	3 cut(s)	46, 178, 506
Psp6I	CCWGG	2 cut(s)	475, 664
PspFI	CCCAGC	1 cut(s)	16
PspGI	CCWGG	2 cut(s)	475, 664
PspPI	GGNCC	2 cut(s)	105, 138
PsuI	RGATCY	1 cut(s)	395
RseI	CAYNNNNRTG	1 cut(s)	830
SapI	GCTCTTC	2 cut(s)	184, 648
SaqAI	TTAA	1 cut(s)	309
SatI	GCNGC	4 cut(s)	81, 116, 314, 782
Sau3AI	GATC	3 cut(s)	395, 516, 787
Sau96I	GGNCC	2 cut(s)	105, 138
SchI	GAGTC	3 cut(s)	46, 179, 507
ScrFI	CCNGG	2 cut(s)	477, 666
SduI	GDGCHC	1 cut(s)	196
SfaNI	GCATC	1 cut(s)	395
SinI	GGWCC	1 cut(s)	138
SmiMI	CAYNNNNRTG	1 cut(s)	830
SmlI	CTYRAG	1 cut(s)	308
SmoI	CTYRAG	1 cut(s)	308
SpeI	ACTAGT	1 cut(s)	389
SphI	GCATGC	1 cut(s)	241
Sse9I	AATT	4 cut(s)	302, 443, 574, 671
SsiI	CCGC	3 cut(s)	111, 186, 539
SspI	AATATT	1 cut(s)	864
SspMI	CTAG	2 cut(s)	183, 390
StyD4I	CCNGG	2 cut(s)	475, 664
TaaI	ACNGT	1 cut(s)	606
TaiI	ACGT	1 cut(s)	775
TaqI	TCGA	3 cut(s)	32, 496, 515
TasI	AATT	4 cut(s)	302, 443, 574, 671
TfiI	GAWTC	2 cut(s)	43, 493
Tru1I	TTAA	1 cut(s)	309
Tru9I	TTAA	1 cut(s)	309
TscAI	CASTG	1 cut(s)	140
TseI	GCWGC	4 cut(s)	80, 115, 313, 781
TspDTI	ATGAA	2 cut(s)	873, 891
TspRI	CASTG	1 cut(s)	140
Van91I	CCANNNNNTGG	1 cut(s)	767
Vha464I	CTTAAG	1 cut(s)	308
VpaK11BI	GGWCC	1 cut(s)	138
XapI	RAATTY	2 cut(s)	574, 671
XceI	RCATGY	2 cut(s)	241, 274
XspI	CTAG	2 cut(s)	183, 390

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.