AT5G17070

Serine threonine-protein phosphatase 4 regulatory subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0002676
Physical Location & Seq
Reverse (-)
5613307 .. 5616233
2927 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G17070.2

Sequence Viewer

Length: 834 bp
ATGGAGAATCCGTCATCATCGGAAACTTCCGAGATTTCCTCCGTCGTTCATCCCAATGACGGCGTTCATCCCAATGACGGCGTTCATCCCAATGACGGCGTTCAACGCCAGGATCACGCCGTCCTTCCCGAAGTTCTTGAGCATCCTGGAGCTGAGCAGATAGCAGATATGTCTGAGGAAGAAGTAAAGCGCACATTAGAAGCTGTAGCATCTACTGGGAAGTTCTGGCAGGACTGGGAGATACTAAAGGGAACGCTATCGTACTGGTTGAAGAAGGTTCTATCGGAATATTCTGAGGCAAAAATGACGGATGAGCAACAAAAGGAAGCTCTTGGAGAACCATATTCAGAGCTGGTTAGTCGATTGGATGAAGCCCTTCTTAGATTCGATGATGGACCTCCATTTACATTGCAGAGACTCTGTGAGATCCTTTTGGCTGCAAGGAGCATCTACCCAAAGCTCTCAAAACTCGCTCTTGCATTAGAAAAGAATCTGTTGGTTACTTCTATGTTAGCCATCAGTACAGAGCCACAATCACAAACCACTGAGGATCCAAACACAGCAACCTCAGAGACAATAACATCTGCTGCAAGTTGCGATCCAAATGTAATTGAGTCAATGGGAGGCGATAAGGATGAGATAATGACAGAGGTAGAAGAAGCAGATGTTGATGACGCAATGACTGTTGACATGGAAACAATCGATGAACCATCAGAGACAATGACGACCACGAGTGAGAGTGAGACTCTAAGCGAAAACACTGCTGCACAACCATTATCGGATTCAATGGTGGCAGAGGAAGGAGATTCACGGTTGCCTACAACGTGTGCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPP4R2

Protein Analysis

277

Amino Acids

30.3

Weight (kDa)

4.13

Isoelectric Point (pI)

54.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPP4R2 PF09184 24 - 217 9.5e-14 PPP4R2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 5 cut(s) 120, 421, 545, 558, 593
AfaI GTAC 2 cut(s) 263, 523
AfiI CCNNNNNNNGG 3 cut(s) 59, 77, 95
AflIII ACRYGT 1 cut(s) 824
AgsI TTSAA 3 cut(s) 104, 271, 786
AjnI CCWGG 2 cut(s) 108, 145
AluBI AGCT 5 cut(s) 152, 203, 329, 352, 460
AluI AGCT 5 cut(s) 152, 203, 329, 352, 460
Alw26I GTCTC 4 cut(s) 409, 566, 710, 737
AlwI GGATC 5 cut(s) 120, 421, 545, 558, 593
ApeKI GCWGC 3 cut(s) 437, 587, 764
Asp700I GAANNNNTTC 1 cut(s) 375
AspLEI GCGC 1 cut(s) 192
AspS9I GGNCC 1 cut(s) 395
AvaII GGWCC 1 cut(s) 395
BamHI GGATCC 1 cut(s) 550
BauI CACGAG 1 cut(s) 730
BbvI GCAGC 3 cut(s) 424, 574, 751
BccI CCATC 3 cut(s) 386, 524, 718
BceAI ACGGC 4 cut(s) 76, 94, 104, 112
BcgI CGANNNNNNTGC 2 cut(s) 743, 777
BciT130I CCWGG 2 cut(s) 110, 147
BcoDI GTCTC 4 cut(s) 409, 566, 710, 737
BfaI CTAG 1 cut(s) 832
BfmI CTRYAG 1 cut(s) 204
BisI GCNGC 3 cut(s) 438, 588, 765
BlpI GCTNAGC 1 cut(s) 153
BlsI GCNGC 3 cut(s) 439, 589, 766
Bme1390I CCNGG 2 cut(s) 110, 147
Bme18I GGWCC 1 cut(s) 395
BmgT120I GGNCC 1 cut(s) 395
BmiI GGNNCC 1 cut(s) 552
BmrFI CCNGG 2 cut(s) 110, 147
BmrI ACTGGG 2 cut(s) 225, 244
BmsI GCATC 3 cut(s) 151, 218, 456
BmuI ACTGGG 2 cut(s) 225, 244
BplI GAGNNNNNCTC 4 cut(s) 23, 55, 730, 762
BpmI CTGGAG 1 cut(s) 168
Bpu1102I GCTNAGC 1 cut(s) 153
BpuEI CTTGAG 1 cut(s) 158
Bsa29I ATCGAT 1 cut(s) 702
BsaXI ACNNNNNCTCC 1 cut(s) 26
Bsc4I CCNNNNNNNGG 3 cut(s) 59, 77, 95
Bse1I ACTGG 3 cut(s) 220, 239, 269
Bse3DI GCAATG 2 cut(s) 407, 684
BseBI CCWGG 2 cut(s) 110, 147
BseCI ATCGAT 1 cut(s) 702
BseGI GGATG 7 cut(s) 49, 67, 85, 142, 316, 373, 640
BseLI CCNNNNNNNGG 3 cut(s) 59, 77, 95
BseMI GCAATG 2 cut(s) 407, 684
BseMII CTCAG 5 cut(s) 144, 165, 285, 537, 582
BseNI ACTGG 3 cut(s) 220, 239, 269
BseXI GCAGC 3 cut(s) 424, 574, 751
BsgI GTGCAG 1 cut(s) 750
BshVI ATCGAT 1 cut(s) 702
BslI CCNNNNNNNGG 3 cut(s) 59, 77, 95
BsmAI GTCTC 4 cut(s) 409, 566, 710, 737
Bsp143I GATC 4 cut(s) 112, 426, 550, 598
Bsp1720I GCTNAGC 1 cut(s) 153
BspCNI CTCAG 5 cut(s) 145, 166, 286, 538, 581
BspDI ATCGAT 1 cut(s) 702
BspLI GGNNCC 1 cut(s) 552
BspPI GGATC 5 cut(s) 120, 421, 545, 558, 593
BsrDI GCAATG 2 cut(s) 407, 684
BsrI ACTGG 3 cut(s) 220, 239, 269
BssMI GATC 4 cut(s) 112, 426, 550, 598
BssSI CACGAG 1 cut(s) 730
Bst2BI CACGAG 1 cut(s) 730
Bst2UI CCWGG 2 cut(s) 110, 147
Bst4CI ACNGT 2 cut(s) 685, 813
BstDEI CTNAG 7 cut(s) 153, 174, 294, 380, 546, 568, 749
BstF5I GGATG 7 cut(s) 49, 67, 85, 142, 316, 373, 640
BstHHI GCGC 1 cut(s) 192
BstKTI GATC 4 cut(s) 115, 429, 553, 601
BstMAI GTCTC 4 cut(s) 409, 566, 710, 737
BstMBI GATC 4 cut(s) 112, 426, 550, 598
BstMWI GCNNNNNNNGC 1 cut(s) 105
BstNI CCWGG 2 cut(s) 110, 147
BstSCI CCNGG 2 cut(s) 108, 145
BstSFI CTRYAG 1 cut(s) 204
BstV1I GCAGC 3 cut(s) 424, 574, 751
BstX2I RGATCY 2 cut(s) 426, 550
BstYI RGATCY 2 cut(s) 426, 550
Bsu15I ATCGAT 1 cut(s) 702
BsuTUI ATCGAT 1 cut(s) 702
BtsCI GGATG 7 cut(s) 49, 67, 85, 142, 316, 373, 640
BtsI GCAGTG 1 cut(s) 759
BtsIMutI CAGTG 2 cut(s) 543, 759
CfoI GCGC 1 cut(s) 192
Cfr13I GGNCC 1 cut(s) 395
ClaI ATCGAT 1 cut(s) 702
CseI GACGC 1 cut(s) 683
Csp6I GTAC 2 cut(s) 262, 522
CviAII CATG 1 cut(s) 691
CviJI RGCY 9 cut(s) 152, 203, 329, 352, 374, 437, 460, 515, 529
CviKI_1 RGCY 9 cut(s) 152, 203, 329, 352, 374, 437, 460, 515, 529
CviQI GTAC 2 cut(s) 262, 522
DdeI CTNAG 7 cut(s) 153, 174, 294, 380, 546, 568, 749
DpnI GATC 4 cut(s) 114, 428, 552, 600
DpnII GATC 4 cut(s) 112, 426, 550, 598
Eco47I GGWCC 1 cut(s) 395
EcoRII CCWGG 2 cut(s) 108, 145
FaeI CATG 1 cut(s) 694
FaiI YATR 4 cut(s) 170, 343, 509, 692
FalI AAGNNNNNCTT 2 cut(s) 363, 395
FatI CATG 1 cut(s) 690
Fnu4HI GCNGC 3 cut(s) 438, 588, 765
FokI GGATG 7 cut(s) 36, 54, 72, 129, 323, 380, 647
Fsp4HI GCNGC 3 cut(s) 438, 588, 765
FspBI CTAG 1 cut(s) 832
GlaI GCGC 1 cut(s) 191
GluI GCNGC 3 cut(s) 438, 588, 765
GsuI CTGGAG 1 cut(s) 168
HgaI GACGC 1 cut(s) 683
HhaI GCGC 1 cut(s) 192
Hin1II CATG 1 cut(s) 694
Hin6I GCGC 1 cut(s) 190
HinP1I GCGC 1 cut(s) 190
HincII GTYRAC 1 cut(s) 688
HindII GTYRAC 1 cut(s) 688
HinfI GANTC 8 cut(s) 7, 384, 417, 490, 614, 745, 782, 806
Hpy166II GTNNAC 1 cut(s) 688
Hpy188I TCNGA 9 cut(s) 22, 31, 175, 286, 295, 349, 571, 715, 781
Hpy188III TCNNGA 2 cut(s) 128, 137
Hpy8I GTNNAC 1 cut(s) 688
Hpy99I CGWCG 1 cut(s) 47
HpyAV CCTTC 4 cut(s) 134, 268, 386, 794
HpyCH4III ACNGT 2 cut(s) 685, 813
HpyCH4IV ACGT 1 cut(s) 824
HpyCH4V TGCA 5 cut(s) 412, 440, 479, 590, 767
HpyF10VI GCNNNNNNNGC 1 cut(s) 105
HpyF3I CTNAG 7 cut(s) 153, 174, 294, 380, 546, 568, 749
HpySE526I ACGT 1 cut(s) 824
Hsp92II CATG 1 cut(s) 694
HspAI GCGC 1 cut(s) 190
Kzo9I GATC 4 cut(s) 112, 426, 550, 598
LmnI GCTCC 2 cut(s) 149, 444
Lsp1109I GCAGC 3 cut(s) 424, 574, 751
LweI GCATC 3 cut(s) 151, 218, 456
MaeI CTAG 1 cut(s) 832
MaeII ACGT 1 cut(s) 824
MaeIII GTNAC 1 cut(s) 499
MalI GATC 4 cut(s) 114, 428, 552, 600
MboI GATC 4 cut(s) 112, 426, 550, 598
MboII GAAGA 3 cut(s) 191, 283, 668
MflI RGATCY 2 cut(s) 426, 550
MluCI AATT 1 cut(s) 609
MlyI GAGTC 3 cut(s) 411, 623, 739
MnlI CCTC 9 cut(s) 49, 169, 289, 408, 541, 577, 617, 643, 790
MroXI GAANNNNTTC 1 cut(s) 375
MslI CAYNNNNRTG 3 cut(s) 54, 72, 90
MspR9I CCNGG 2 cut(s) 110, 147
MvaI CCWGG 2 cut(s) 110, 147
MwoI GCNNNNNNNGC 1 cut(s) 105
NdeII GATC 4 cut(s) 112, 426, 550, 598
NlaIII CATG 1 cut(s) 694
NlaIV GGNNCC 1 cut(s) 552
PdmI GAANNNNTTC 1 cut(s) 375
PfeI GAWTC 5 cut(s) 7, 384, 490, 782, 806
PfoI TCCNGGA 1 cut(s) 145
PkrI GCNGC 3 cut(s) 439, 589, 766
PleI GAGTC 3 cut(s) 411, 622, 739
PpsI GAGTC 3 cut(s) 411, 622, 739
Psp6I CCWGG 2 cut(s) 108, 145
PspGI CCWGG 2 cut(s) 108, 145
PspN4I GGNNCC 1 cut(s) 552
PspPI GGNCC 1 cut(s) 395
PsuI RGATCY 2 cut(s) 426, 550
RsaI GTAC 2 cut(s) 263, 523
RsaNI GTAC 2 cut(s) 262, 522
RseI CAYNNNNRTG 3 cut(s) 54, 72, 90
SatI GCNGC 3 cut(s) 438, 588, 765
Sau3AI GATC 4 cut(s) 112, 426, 550, 598
Sau96I GGNCC 1 cut(s) 395
SchI GAGTC 3 cut(s) 411, 623, 739
ScrFI CCNGG 2 cut(s) 110, 147
SfaNI GCATC 3 cut(s) 151, 218, 456
SfcI CTRYAG 1 cut(s) 204
SinI GGWCC 1 cut(s) 395
SmiMI CAYNNNNRTG 3 cut(s) 54, 72, 90
SmlI CTYRAG 1 cut(s) 137
SmoI CTYRAG 1 cut(s) 137
Sse9I AATT 1 cut(s) 609
SspI AATATT 1 cut(s) 290
SspMI CTAG 1 cut(s) 832
StyD4I CCNGG 2 cut(s) 108, 145
TaaI ACNGT 2 cut(s) 685, 813
TaiI ACGT 1 cut(s) 827
TaqI TCGA 3 cut(s) 361, 387, 702
TasI AATT 1 cut(s) 609
TatI WGTACW 1 cut(s) 521
TfiI GAWTC 5 cut(s) 7, 384, 490, 782, 806
TscAI CASTG 2 cut(s) 550, 766
TseI GCWGC 3 cut(s) 437, 587, 764
TspDTI ATGAA 5 cut(s) 38, 56, 74, 384, 720
TspGWI ACGGA 2 cut(s) 31, 323
TspRI CASTG 2 cut(s) 550, 766
VpaK11BI GGWCC 1 cut(s) 395
XmnI GAANNNNTTC 1 cut(s) 375
XspI CTAG 1 cut(s) 832
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.